KEGG   PATHWAY: isc03040
Entry
isc03040                    Pathway                                
Name
Spliceosome - Ixodes scapularis (black-legged tick)
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
isc03040  Spliceosome
isc03040

Other DBs
GO: 0005681
PDB: 5O9Z 5Z56 6FF7 8I0W
Organism
Ixodes scapularis (black-legged tick) [GN:isc]
Gene
115308193  [KO:K12812] [EC:5.6.2.7]
115308219  [KO:K14280]
115308531  [KO:K14278]
115308557  [KO:K14280]
115308901  [KO:K14278]
115308902  [KO:K14278]
115308903  [KO:K14278]
115308904  [KO:K14279]
115308905  [KO:K14278]
115309244  [KO:K14276]
115310124  [KO:K14277]
115310470  [KO:K14276]
115311754  [KO:K14279]
115311767  [KO:K14279]
115311834  [KO:K14277]
115311856  [KO:K14277]
115312088  [KO:K14280]
115312116  [KO:K14277]
115312435  [KO:K14277]
115312539  [KO:K03283]
115312541  [KO:K03283]
115312665  [KO:K14279]
115312735  [KO:K14277]
115312859  [KO:K14277]
115313066  [KO:K14276]
115314205  [KO:K14277]
115314225  [KO:K12624]
115314458  [KO:K14277]
115314485  [KO:K14276]
115315315  [KO:K14276]
115315634  [KO:K12623]
115315653  [KO:K14279]
115316006  [KO:K14277]
115316431  [KO:K14276]
115316949  [KO:K14276]
115316950  [KO:K14276]
115317362  [KO:K14277]
115317735  [KO:K14277]
115317736  [KO:K14277]
115317904  [KO:K14279]
115317981  [KO:K14277]
115319233  [KO:K14277]
115319906  [KO:K14277]
115320188  [KO:K14279]
115320639  [KO:K12820] [EC:5.6.2.6]
115320899  [KO:K14279]
115321088  [KO:K03283]
115321454  [KO:K14277]
115321928  [KO:K14276]
115322048  [KO:K14280]
115322097  [KO:K10599] [EC:2.3.2.27]
115322527  [KO:K14280]
115322532  [KO:K14280]
115322533  [KO:K14280]
115322535  [KO:K14280]
115322659  [KO:K14277]
115323206  [KO:K14280]
115323303  [KO:K14278]
115323617  [KO:K03283]
115323629  [KO:K03283]
115323694  [KO:K03283]
115324307  [KO:K14276]
115324308  [KO:K14276]
115324309  [KO:K14276]
115324417  [KO:K14280]
115324894  [KO:K14277]
115324895  [KO:K14277]
115324924  [KO:K14276]
115324969  [KO:K12818] [EC:5.6.2.6]
115325275  [KO:K14280]
115326398  [KO:K12815] [EC:5.6.2.6]
115326768  [KO:K14280]
115327363  [KO:K12855]
115327469  [KO:K14277]
115327552  [KO:K14276]
115327554  [KO:K14279]
115328364  [KO:K14279]
115329450  [KO:K14276]
115329530  [KO:K14277]
115329531  [KO:K14277]
115329533  [KO:K14277]
115329881  [KO:K14276]
115329882  [KO:K14276]
115329964  [KO:K14277]
115330199  [KO:K12835] [EC:5.6.2.7]
115330410  [KO:K14276]
115332240  [KO:K14277]
115332889  [KO:K14277]
115333156  [KO:K14279]
120837902  [KO:K14276]
120837903  [KO:K14276]
120839425  [KO:K14279]
120839465  [KO:K14276]
120841212  [KO:K14277]
120841470  [KO:K12622]
120841501  [KO:K14279]
120841502  [KO:K14279]
120841664  [KO:K14277]
120842443  [KO:K14280]
120842589  [KO:K14280]
120843142  [KO:K14277]
120843195  [KO:K14280]
120843485  [KO:K12627]
120843864  [KO:K12733] [EC:5.2.1.8]
120843894  [KO:K14279]
120844108  [KO:K14277]
120844382  [KO:K14277]
120846590  [KO:K14279]
120848116  [KO:K14277]
120848274  [KO:K14278]
120849291  [KO:K14276]
120849918  [KO:K14277]
120850507  [KO:K12812] [EC:5.6.2.7]
120850767  [KO:K14276]
120850768  [KO:K14276]
121833071  [KO:K14276]
121833656  [KO:K14276]
121833657  [KO:K14277]
121834695  [KO:K14276]
121835036  [KO:K12818] [EC:5.6.2.6]
121835372  [KO:K03283]
121835393  [KO:K14279]
121836207  [KO:K14277]
121836208  [KO:K14280]
121837433  [KO:K14278]
121837434  [KO:K14278]
121837896  [KO:K14276]
121837897  [KO:K14276]
8023296  [KO:K14279]
8023737  [KO:K12625]
8024031  [KO:K12833]
8024201  [KO:K12870]
8024477  [KO:K12877]
8024675  [KO:K03283]
8024781  [KO:K12817]
8024830  [KO:K12852]
8026041  [KO:K12883]
8026106  [KO:K12847]
8026220  [KO:K12876]
8026825  [KO:K09564] [EC:5.2.1.8]
8026953  [KO:K12868]
8026967  [KO:K12881]
8027107  [KO:K03283]
8027256  [KO:K12874]
8027395  [KO:K14280]
8027605  [KO:K12863]
8027711  [KO:K14276]
8027906  [KO:K12837]
8028052  [KO:K14280]
8028079  [KO:K14276]
8028359  [KO:K12864]
8028895  [KO:K12626]
8028961  [KO:K12858] [EC:5.6.2.7]
8029115  [KO:K12834]
8029848  [KO:K12838]
8030293  [KO:K12836]
8030322  [KO:K12873]
8030470  [KO:K11086]
8030541  [KO:K14278]
8030618  [KO:K14280]
8030623  [KO:K11984]
8030750  [KO:K12816]
8030956  [KO:K12819]
8031133  [KO:K11099]
8032327  [KO:K11087]
8032815  [KO:K12830]
8033225  [KO:K03283]
8033801  [KO:K14276]
8033823  [KO:K12828]
8034122  [KO:K12848]
8034979  [KO:K11095]
8036189  [KO:K11096]
8036207  [KO:K11088]
8036441  [KO:K12882]
8036686  [KO:K12733] [EC:5.2.1.8]
8036715  [KO:K12831]
8036788  [KO:K12872]
8036798  [KO:K12741]
8037153  [KO:K03283]
8037298  [KO:K12869]
8037393  [KO:K28450]
8037611  [KO:K06063]
8038593  [KO:K12856]
8040085  [KO:K11098]
8040158  [KO:K13025] [EC:5.6.2.7]
8040318  [KO:K12621]
8040581  [KO:K12844]
8040952  [KO:K12900]
8041160  [KO:K12860]
8041598  [KO:K12880]
8041725  [KO:K12832]
8041873  [KO:K12867]
8042033  [KO:K11097]
8042303  [KO:K12662]
8042592  [KO:K12890]
8042924  [KO:K03283]
8043085  [KO:K12857]
8043999  [KO:K03283]
8050864  [KO:K12859]
8050959  [KO:K12842]
8052109  [KO:K12896]
8052153  [KO:K12845]
8052219  [KO:K09567] [EC:5.2.1.8]
8052311  [KO:K14277]
8053044  [KO:K28527]
8053155  [KO:K12627]
8053423  [KO:K12862]
8053960  [KO:K12813] [EC:5.6.2.6]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
Reference
  Authors
Bertram K, Agafonov DE, Dybkov O, Haselbach D, Leelaram MN, Will CL, Urlaub H, Kastner B, Luhrmann R, Stark H
  Title
Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.
  Journal
Cell 170:701-713.e11 (2017)
DOI:10.1016/j.cell.2017.07.011
Reference
  Authors
Zhang X, Yan C, Zhan X, Li L, Lei J, Shi Y
  Title
Structure of the human activated spliceosome in three conformational states.
  Journal
Cell Res 28:307-322 (2018)
DOI:10.1038/cr.2018.14
Reference
  Authors
Haselbach D, Komarov I, Agafonov DE, Hartmuth K, Graf B, Dybkov O, Urlaub H, Kastner B, Luhrmann R, Stark H
  Title
Structure and Conformational Dynamics of the Human Spliceosomal B(act) Complex.
  Journal
Cell 172:454-464.e11 (2018)
DOI:10.1016/j.cell.2018.01.010
Reference
  Authors
Zhan X, Lu Y, Shi Y
  Title
Molecular basis for the activation of human spliceosome.
  Journal
Nat Commun 15:6348 (2024)
DOI:10.1038/s41467-024-50785-0
KO pathway
ko03040   

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