KEGG   PATHWAY: cjo04217
Entry
cjo04217                    Pathway                                
Name
Necroptosis - Coturnix japonica (Japanese quail)
Description
Necroptosis is a programmed form of necrosis. It can be initiated by different stimuli, such as tumor necrosis factor (TNF), TNF-related apoptosis-inducing ligand (TRAIL), Fas ligand (FasL), interferon (IFN), LPS, viral DNA or RNA, DNA-damage agent and requires the kinase activity of receptor-interacting protein 1 (RIPK1) and RIPK3. Its execution involves ROS generation, calcium overload, the opening of the mitochondrial permeability transition pore, mitochondrial fission, inflammatory response and chromatinolysis. Necroptosis participates in many pathogenesis of diseases, including neurological diseases, retinal disorders, acute kidney injury, inflammatory diseases and microbial infections.
Class
Cellular Processes; Cell growth and death
Pathway map
cjo04217  Necroptosis
cjo04217

Organism
Coturnix japonica (Japanese quail) [GN:cjo]
Gene
107319582  TNFRSF1A; tumor necrosis factor receptor superfamily member 1A [KO:K03158]
107319056  TRADD; LOW QUALITY PROTEIN: tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
107321623  TRAF2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
107311111  TRAF5; TNF receptor-associated factor 5 [KO:K09849]
107309664  RIPK1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
107308397  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
107312953  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
107307646  LOW QUALITY PROTEIN: ranBP-type and C3HC4-type zinc finger-containing protein 1-like [KO:K10630] [EC:2.3.2.31]
107323247  spermatogenesis-associated protein 2-like [KO:K17595]
107319499  SPATA2L; spermatogenesis-associated protein 2-like protein [KO:K17595]
107319284  uncharacterized protein LOC107319284 [KO:K17595]
107323181  SPATA2; spermatogenesis-associated protein 2 [KO:K17595]
107310621  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
107319020  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
107314471  FADD; FAS-associated death domain protein [KO:K02373]
107316523  caspase-8-like isoform X4 [KO:K04398] [EC:3.4.22.61]
107316524  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
107316522  CFLAR; CASP8 and FADD-like apoptosis regulator [KO:K04724]
107324446  cytochrome b-245 heavy chain isoform X1 [KO:K21421] [EC:1.-.-.-]
107313595  CAMK2D; calcium/calmodulin-dependent protein kinase type II subunit delta isoform X1 [KO:K04515] [EC:2.7.11.17]
107315812  CAMK2G; calcium/calmodulin-dependent protein kinase type II subunit gamma isoform X8 [KO:K04515] [EC:2.7.11.17]
107323605  CAMK2B; calcium/calmodulin-dependent protein kinase type II subunit beta [KO:K04515] [EC:2.7.11.17]
107320147  CAMK2A; calcium/calmodulin-dependent protein kinase type II subunit alpha isoform X1 [KO:K04515] [EC:2.7.11.17]
107305856  SLC25A6; ADP/ATP translocase 3 [KO:K05863]
107312944  SLC25A5; ADP/ATP translocase 2 [KO:K05863]
107313279  SLC25A4; ADP/ATP translocase 1 [KO:K05863]
107313014  PPID; peptidyl-prolyl cis-trans isomerase D [KO:K05864] [EC:5.2.1.8]
107320177  VDAC1; voltage-dependent anion-selective channel protein 1 [KO:K05862]
107315829  VDAC2; voltage-dependent anion-selective channel protein 2 isoform X1 [KO:K15040]
107323745  VDAC3; voltage-dependent anion-selective channel protein 3 isoform X1 [KO:K15041]
107315563  GLUD1; glutamate dehydrogenase 1, mitochondrial [KO:K00261] [EC:1.4.1.3]
107317270  GLUL; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
107321620  glutamine synthetase isoform X2 [KO:K01915] [EC:6.3.1.2]
107307130  glycogen phosphorylase, muscle form-like [KO:K00688] [EC:2.4.1.1]
107310736  glycogen phosphorylase, brain form [KO:K00688] [EC:2.4.1.1]
107315529  PYGL; glycogen phosphorylase, liver form [KO:K00688] [EC:2.4.1.1]
107313439  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
107315851  MAPK8; mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
107320159  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
107314460  FTH1; ferritin heavy chain [KO:K00522] [EC:1.16.3.1]
107314826  cytosolic phospholipase A2 beta isoform X1 [KO:K16342] [EC:3.1.1.4]
107314842  cytosolic phospholipase A2 epsilon-like isoform X1 [KO:K16342] [EC:3.1.1.4]
107314843  cytosolic phospholipase A2 epsilon-like isoform X1 [KO:K16342] [EC:3.1.1.4]
107314844  cytosolic phospholipase A2 zeta isoform X2 [KO:K16342] [EC:3.1.1.4]
107314845  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
107314846  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
107314852  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
107314717  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
107314722  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
107317317  PLA2G4A; cytosolic phospholipase A2 [KO:K16342] [EC:3.1.1.4]
107307079  CAPN1; calpain-1 catalytic subunit [KO:K01367] [EC:3.4.22.52]
107311285  CAPN11; calpain-11 [KO:K01367] [EC:3.4.22.52]
107311033  CAPN2; calpain-2 catalytic subunit [KO:K03853] [EC:3.4.22.53]
107308580  SMPD1; sphingomyelin phosphodiesterase [KO:K12350] [EC:3.1.4.12]
107319074  MLKL; mixed lineage kinase domain-like protein isoform X1 [KO:K08849] [EC:2.7.11.1]
107321069  PGAM5; serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1 [KO:K15637] [EC:3.1.3.16]
107315715  DNM1L; dynamin-1-like protein isoform X1 [KO:K17065] [EC:3.6.5.5]
107322632  caspase-1-like isoform X2 [KO:K01370] [EC:3.4.22.36]
107323637  interleukin-1 beta [KO:K04519]
107325867  CHMP2A; charged multivesicular body protein 2a [KO:K12191]
107322199  CHMP2B; charged multivesicular body protein 2b [KO:K12192]
107322863  CHMP4B; charged multivesicular body protein 4b [KO:K12194]
107310317  CHMP4C; charged multivesicular body protein 4c isoform X1 [KO:K24782]
107322258  CHMP6; charged multivesicular body protein 6 [KO:K12195]
107309630  VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196]
107319482  VPS4A; vacuolar protein sorting-associated protein 4A isoform X1 [KO:K12196]
107312510  CHMP1B; charged multivesicular body protein 1b [KO:K12197]
107319441  CHMP1A; charged multivesicular body protein 1a [KO:K12197]
107309459  CHMP5; charged multivesicular body protein 5 [KO:K12198]
107323627  CHMP7; charged multivesicular body protein 7 isoform X1 [KO:K15053]
107318704  TRPM7; transient receptor potential cation channel subfamily M member 7 isoform X1 [KO:K04982] [EC:2.7.11.1]
107308252  HMGB1; LOW QUALITY PROTEIN: high mobility group protein B1 [KO:K10802]
107318308  TNFSF10; tumor necrosis factor ligand superfamily member 10 isoform X1 [KO:K04721]
107314696  uncharacterized protein LOC107314696 isoform X1 [KO:K04722]
107323583  tumor necrosis factor receptor superfamily member 10B-like [KO:K04722]
107315904  FAS; tumor necrosis factor receptor superfamily member 6 isoform X1 [KO:K04390]
107306162  interferon kappa-like [KO:K05414]
107310263  IFNG; interferon gamma [KO:K04687]
107322958  IFNAR1; interferon alpha/beta receptor 1 isoform X1 [KO:K05130]
107322936  IFNAR2; interferon alpha/beta receptor 2 isoform X1 [KO:K05131]
107311677  IFNGR1; interferon gamma receptor 1 [KO:K05132]
107323014  IFNGR2; interferon gamma receptor 2 [KO:K05133]
107317736  JAK1; tyrosine-protein kinase JAK1 [KO:K11217] [EC:2.7.10.2]
107306093  JAK2; tyrosine-protein kinase JAK2 isoform X1 [KO:K04447] [EC:2.7.10.2]
107325427  JAK3; tyrosine-protein kinase JAK3 [KO:K11218] [EC:2.7.10.2]
107307223  TYK2; non-receptor tyrosine-protein kinase TYK2 [KO:K11219] [EC:2.7.10.2]
107316322  STAT1; signal transducer and activator of transcription 1-alpha/beta isoform X1 [KO:K11220]
107325845  STAT2; signal transducer and activator of transcription 2 isoform X1 [KO:K11221]
107325206  STAT3; signal transducer and activator of transcription 3 isoform X1 [KO:K04692]
107316323  STAT4; signal transducer and activator of transcription 4 [KO:K11222]
107325190  signal transducer and activator of transcription 5B isoform X1 [KO:K11224]
107325840  STAT6; LOW QUALITY PROTEIN: signal transducer and activator of transcription 6 [KO:K11225]
107311230  EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase isoform X1 [KO:K16195] [EC:2.7.11.1]
107321682  TLR4; toll-like receptor 4 [KO:K10160]
107325399  TICAM1; TIR domain-containing adapter molecule 1 [KO:K05842]
107313669  TLR3; toll-like receptor 3 [KO:K05401]
107307337  USP21; LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 21 [KO:K21634] [EC:3.4.19.12]
107320123  SQSTM1; sequestosome-1 isoform X1 [KO:K14381]
107311298  HSP90AB1; heat shock protein HSP 90-beta [KO:K04079]
107315273  HSP90AA1; heat shock protein HSP 90-alpha [KO:K04079]
107311676  TNFAIP3; tumor necrosis factor alpha-induced protein 3 isoform X1 [KO:K11859] [EC:3.4.19.12]
107310981  PARP1; poly [ADP-ribose] polymerase 1 [KO:K24070] [EC:2.4.2.30]
107315130  BID; BH3-interacting domain death agonist isoform X2 [KO:K04726]
107312503  AIFM1; apoptosis-inducing factor 1, mitochondrial isoform X1 [KO:K04727] [EC:1.-.-.-]
107312385  histone H2A.J [KO:K11251]
107312387  histone H2A-IV [KO:K11251]
107312394  histone H2A-IV [KO:K11251]
107312539  histone H2A-IV [KO:K11251]
107312548  histone H2A-IV [KO:K11251]
107312618  histone H2A-IV [KO:K11251]
107318436  late histone H2A.2.2-like [KO:K11251]
107307028  histone H2A, sperm-like [KO:K11251]
107307040  histone H2A-beta, sperm-like [KO:K11251]
107313649  histone H2A.Z [KO:K11251]
107315759  core histone macro-H2A.2 isoform X1 [KO:K11251]
107313874  histone H2A, sperm-like [KO:K11251]
107319847  histone H2A type 1 [KO:K11251]
107320185  core histone macro-H2A.1 isoform X1 [KO:K11251]
107323601  histone H2A.V [KO:K11251]
107324115  histone H2A [KO:K11251]
107323604  PPIA; peptidyl-prolyl cis-trans isomerase A [KO:K03767] [EC:5.2.1.8]
107309650  BCL2; apoptosis regulator Bcl-2 [KO:K02161]
Compound
C00002  ATP
C00027  Hydrogen peroxide
C00076  Calcium cation
C00195  N-Acylsphingosine
C00219  Arachidonate
C00305  Magnesium cation
C00319  Sphingosine
C00550  Sphingomyelin
C14592  N-Methyl-N'-nitro-N-nitrosoguanidine
C16844  Hydroxyl radical
Reference
  Authors
Vandenabeele P, Galluzzi L, Vanden Berghe T, Kroemer G
  Title
Molecular mechanisms of necroptosis: an ordered cellular explosion.
  Journal
Nat Rev Mol Cell Biol 11:700-14 (2010)
DOI:10.1038/nrm2970
Reference
  Authors
Brenner D, Blaser H, Mak TW
  Title
Regulation of tumour necrosis factor signalling: live or let die.
  Journal
Nat Rev Immunol 15:362-74 (2015)
DOI:10.1038/nri3834
Reference
  Authors
Conrad M, Angeli JP, Vandenabeele P, Stockwell BR
  Title
Regulated necrosis: disease relevance and therapeutic opportunities.
  Journal
Nat Rev Drug Discov 15:348-66 (2016)
DOI:10.1038/nrd.2015.6
Reference
  Authors
Ofengeim D, Yuan J
  Title
Regulation of RIP1 kinase signalling at the crossroads of inflammation and cell death.
  Journal
Nat Rev Mol Cell Biol 14:727-36 (2013)
DOI:10.1038/nrm3683
Reference
  Authors
Murphy JM, Vince JE
  Title
Post-translational control of RIPK3 and MLKL mediated necroptotic cell death.
  Journal
F1000Res 4:F1000 Faculty Rev-1297 (2015)
DOI:10.12688/f1000research.7046.1
Reference
  Authors
Vanden Berghe T, Linkermann A, Jouan-Lanhouet S, Walczak H, Vandenabeele P
  Title
Regulated necrosis: the expanding network of non-apoptotic cell death pathways.
  Journal
Nat Rev Mol Cell Biol 15:135-47 (2014)
DOI:10.1038/nrm3737
Reference
  Authors
Dondelinger Y, Hulpiau P, Saeys Y, Bertrand MJ, Vandenabeele P
  Title
An evolutionary perspective on the necroptotic pathway.
  Journal
Trends Cell Biol 26:721-32 (2016)
DOI:10.1016/j.tcb.2016.06.004
Reference
  Authors
Thapa RJ, Ingram JP, Ragan KB, Nogusa S, Boyd DF, Benitez AA, Sridharan H, Kosoff R, Shubina M, Landsteiner VJ, Andrake M, Vogel P, Sigal LJ, tenOever BR, Thomas PG, Upton JW, Balachandran S
  Title
DAI Senses Influenza A Virus Genomic RNA and Activates RIPK3-Dependent Cell Death.
  Journal
Cell Host Microbe 20:674-681 (2016)
DOI:10.1016/j.chom.2016.09.014
Reference
  Authors
Yuan J, Najafov A, Py BF
  Title
Roles of Caspases in Necrotic Cell Death.
  Journal
Cell 167:1693-1704 (2016)
DOI:10.1016/j.cell.2016.11.047
Reference
  Authors
Jorgensen I, Rayamajhi M, Miao EA
  Title
Programmed cell death as a defence against infection.
  Journal
Nat Rev Immunol 17:151-164 (2017)
DOI:10.1038/nri.2016.147
Reference
  Authors
Vandenabeele P, Declercq W, Van Herreweghe F, Vanden Berghe T
  Title
The role of the kinases RIP1 and RIP3 in TNF-induced necrosis.
  Journal
Sci Signal 3:re4 (2010)
DOI:10.1126/scisignal.3115re4
Reference
  Authors
Vanlangenakker N, Vanden Berghe T, Vandenabeele P
  Title
Many stimuli pull the necrotic trigger, an overview.
  Journal
Cell Death Differ 19:75-86 (2012)
DOI:10.1038/cdd.2011.164
Reference
  Authors
Moriwaki K, Chan FK
  Title
RIP3: a molecular switch for necrosis and inflammation.
  Journal
Genes Dev 27:1640-9 (2013)
DOI:10.1101/gad.223321.113
Reference
  Authors
Humphries F, Yang S, Wang B, Moynagh PN
  Title
RIP kinases: key decision makers in cell death and innate immunity.
  Journal
Cell Death Differ 22:225-36 (2015)
DOI:10.1038/cdd.2014.126
Reference
  Authors
Wegner KW, Saleh D, Degterev A
  Title
Complex Pathologic Roles of RIPK1 and RIPK3: Moving Beyond Necroptosis.
  Journal
Trends Pharmacol Sci 38:202-225 (2017)
DOI:10.1016/j.tips.2016.12.005
Reference
  Authors
Kupka S, De Miguel D, Draber P, Martino L, Surinova S, Rittinger K, Walczak H
  Title
SPATA2-Mediated Binding of CYLD to HOIP Enables CYLD Recruitment to Signaling Complexes.
  Journal
Cell Rep 16:2271-80 (2016)
DOI:10.1016/j.celrep.2016.07.086
Reference
  Authors
Goodall ML, Fitzwalter BE, Zahedi S, Wu M, Rodriguez D, Mulcahy-Levy JM, Green DR, Morgan M, Cramer SD, Thorburn A
  Title
The Autophagy Machinery Controls Cell Death Switching between Apoptosis and Necroptosis.
  Journal
Dev Cell 37:337-49 (2016)
DOI:10.1016/j.devcel.2016.04.018
Reference
  Authors
Xu G, Tan X, Wang H, Sun W, Shi Y, Burlingame S, Gu X, Cao G, Zhang T, Qin J, Yang J
  Title
Ubiquitin-specific peptidase 21 inhibits tumor necrosis factor alpha-induced nuclear factor kappaB activation via binding to and deubiquitinating receptor-interacting protein 1.
  Journal
J Biol Chem 285:969-78 (2010)
DOI:10.1074/jbc.M109.042689
Reference
  Authors
Jacobsen AV, Silke J
  Title
The importance of being chaperoned: HSP90 and necroptosis.
  Journal
Cell Chem Biol 23:205-7 (2016)
DOI:10.1016/j.chembiol.2016.02.003
Reference
  Authors
Gurung P, Man SM, Kanneganti TD
  Title
A20 is a regulator of necroptosis.
  Journal
Nat Immunol 16:596-7 (2015)
DOI:10.1038/ni.3174
Reference
  Authors
Feng N, Anderson ME
  Title
CaMKII is a nodal signal for multiple programmed cell death pathways in heart.
  Journal
J Mol Cell Cardiol 103:102-109 (2017)
DOI:10.1016/j.yjmcc.2016.12.007
Reference
  Authors
Zhivotovsky B, Galluzzi L, Kepp O, Kroemer G
  Title
Adenine nucleotide translocase: a component of the phylogenetically conserved cell death machinery.
  Journal
Cell Death Differ 16:1419-25 (2009)
DOI:10.1038/cdd.2009.118
Reference
  Authors
Thapa RJ, Nogusa S, Chen P, Maki JL, Lerro A, Andrake M, Rall GF, Degterev A, Balachandran S
  Title
Interferon-induced RIP1/RIP3-mediated necrosis requires PKR and is licensed by FADD and caspases.
  Journal
Proc Natl Acad Sci U S A 110:E3109-18 (2013)
DOI:10.1073/pnas.1301218110
Reference
  Authors
Thapa RJ, Basagoudanavar SH, Nogusa S, Irrinki K, Mallilankaraman K, Slifker MJ, Beg AA, Madesh M, Balachandran S
  Title
NF-kappaB protects cells from gamma interferon-induced RIP1-dependent necroptosis.
  Journal
Mol Cell Biol 31:2934-46 (2011)
DOI:10.1128/MCB.05445-11
Reference
  Authors
Sridharan H, Upton JW
  Title
Programmed necrosis in microbial pathogenesis.
  Journal
Trends Microbiol 22:199-207 (2014)
DOI:10.1016/j.tim.2014.01.005
Reference
  Authors
Cabon L, Galan-Malo P, Bouharrour A, Delavallee L, Brunelle-Navas MN, Lorenzo HK, Gross A, Susin SA
  Title
BID regulates AIF-mediated caspase-independent necroptosis by promoting BAX activation.
  Journal
Cell Death Differ 19:245-56 (2012)
DOI:10.1038/cdd.2011.91
Reference
  Authors
Baritaud M, Boujrad H, Lorenzo HK, Krantic S, Susin SA
  Title
Histone H2AX: The missing link in AIF-mediated caspase-independent programmed necrosis.
  Journal
Cell Cycle 9:3166-73 (2010)
DOI:10.4161/cc.9.16.12887
Reference
  Authors
Upton JW, Kaiser WJ
  Title
DAI Another Way: Necroptotic Control of Viral Infection.
  Journal
Cell Host Microbe 21:290-293 (2017)
DOI:10.1016/j.chom.2017.01.016
Reference
  Authors
Silke J, Rickard JA, Gerlic M
  Title
The diverse role of RIP kinases in necroptosis and inflammation.
  Journal
Nat Immunol 16:689-97 (2015)
DOI:10.1038/ni.3206
Reference
  Authors
Guo H, Kaiser WJ
  Title
ESCRTing Necroptosis.
  Journal
Cell 169:186-187 (2017)
DOI:10.1016/j.cell.2017.03.030
Reference
  Authors
Gong YN, Guy C, Olauson H, Becker JU, Yang M, Fitzgerald P, Linkermann A, Green DR
  Title
ESCRT-III Acts Downstream of MLKL to Regulate Necroptotic Cell Death and Its Consequences.
  Journal
Cell 169:286-300.e16 (2017)
DOI:10.1016/j.cell.2017.03.020
Reference
  Authors
Petrie EJ, Hildebrand JM, Murphy JM
  Title
Insane in the membrane: a structural perspective of MLKL function in necroptosis.
  Journal
Immunol Cell Biol 95:152-159 (2017)
DOI:10.1038/icb.2016.125
Reference
  Authors
Cai Z, Jitkaew S, Zhao J, Chiang HC, Choksi S, Liu J, Ward Y, Wu LG, Liu ZG
  Title
Plasma membrane translocation of trimerized MLKL protein is required for TNF-induced necroptosis.
  Journal
Nat Cell Biol 16:55-65 (2014)
DOI:10.1038/ncb2883
Reference
  Authors
Lawlor KE, Khan N, Mildenhall A, Gerlic M, Croker BA, D'Cruz AA, Hall C, Kaur Spall S, Anderton H, Masters SL, Rashidi M, Wicks IP, Alexander WS, Mitsuuchi Y, Benetatos CA, Condon SM, Wong WW, Silke J, Vaux DL, Vince JE
  Title
RIPK3 promotes cell death and NLRP3 inflammasome activation in the absence of MLKL.
  Journal
Nat Commun 6:6282 (2015)
DOI:10.1038/ncomms7282
Reference
  Authors
Shlomovitz I, Zargrian S, Gerlic M
  Title
Mechanisms of RIPK3-induced inflammation.
  Journal
Immunol Cell Biol 95:166-172 (2017)
DOI:10.1038/icb.2016.124
Related
pathway
cjo00250  Alanine, aspartate and glutamate metabolism
cjo04210  Apoptosis
KO pathway
ko04217   
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