KEGG   PATHWAY: omc04622
Entry
omc04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Onychostoma macrolepis
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
omc04622  RIG-I-like receptor signaling pathway
omc04622

Organism
Onychostoma macrolepis [GN:omc]
Gene
131532555  rigi; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
131547109  ifih1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
131542917  znfx1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
131552594  mavs; mitochondrial antiviral-signaling protein [KO:K12648]
131536851  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
131522734  traf3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
131547356  tank; TRAF family member-associated NF-kappa-B activator [KO:K12650]
131522025  azi2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
131550620  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
131532646  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
131539244  tbk1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
131549114  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
131551463  irf3; interferon regulatory factor 3 [KO:K05411]
131534161  irf7; interferon regulatory factor 7 isoform X1 [KO:K09447]
131537137  ifnphi1; interferon phi 1 [KO:K05414]
131537782  ifnphi3; interferon phi 3 [KO:K05414]
131544350  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
131543697  fadd; protein FADD [KO:K02373]
131521969  ripk1l; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
131540531  casp22; caspase-22 isoform X1 [KO:K04398] [EC:3.4.22.61]
131542296  casp8; caspase-8 [KO:K04398] [EC:3.4.22.61]
131547061  casp10; caspase-8 [KO:K04398] [EC:3.4.22.61]
131552635  chuk; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
131545292  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
131523729  nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734]
131527013  nfkbiaa; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a [KO:K04734]
131553086  nfkb1; LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit [KO:K02580]
131543637  rela; transcription factor p65 [KO:K04735]
131540710  TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
131540102  traf2b; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
131540439  traf2a; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
131526934  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
131543819  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
131547897  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
131550853  mapk8b; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
131552218  mapk8a; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
131528511  mapk9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
131528658  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
131532537  zgc:171775; STKc_p38 domain-containing protein isoform X1 [KO:K04441] [EC:2.7.11.24]
131524817  mapk12a; mitogen-activated protein kinase 12 isoform X1 [KO:K04441] [EC:2.7.11.24]
131549668  mapk14b; mitogen-activated protein kinase 14B isoform X1 [KO:K04441] [EC:2.7.11.24]
131545795  mapk13; mitogen-activated protein kinase 13 isoform X1 [KO:K04441] [EC:2.7.11.24]
131539074  mapk12b; mitogen-activated protein kinase 12b [KO:K04441] [EC:2.7.11.24]
131539076  mapk11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
131546272  mapk14a; mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
131541818  interleukin-8-like [KO:K10030]
131552269  cxcl8a; interleukin-8 [KO:K10030]
131544847  cxcl19; C-X-C motif chemokine 19 [KO:K10030]
131525460  tnfa; tumor necrosis factor a (TNF superfamily, member 2) [KO:K03156]
131526386  tumor necrosis factor-like [KO:K03156]
131520808  il12a; interleukin-12 subunit alpha [KO:K05406]
131521563  uncharacterized protein zmp:0000001127 [KO:K05406]
131552864  il12ba; interleukin 12Ba isoform X1 [KO:K05425]
131521259  adar; LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
131531590  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
131542204  trim25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
131542145  cyldl; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
131544273  cylda; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
131544831  si:cabz01101003.1; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
131521560  atg5; autophagy protein 5 isoform X1 [KO:K08339]
131522282  atg12; ubiquitin-like protein ATG12 [KO:K08336]
131520902  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
131553470  sting1; stimulator of interferon genes protein [KO:K12654]
131549444  otud5b; OTU domain-containing protein 5b [KO:K12655] [EC:3.4.19.12]
131545311  otud5a; OTU domain-containing protein 5-A isoform X1 [KO:K12655] [EC:3.4.19.12]
131531493  sike1; suppressor of IKBKE 1 isoform X1 [KO:K12656]
131542015  ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 [KO:K11594] [EC:5.6.2.7]
131546710  ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 [KO:K11594] [EC:5.6.2.7]
131536512  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
131544160  tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
omc04010  MAPK signaling pathway
omc04120  Ubiquitin mediated proteolysis
omc04210  Apoptosis
KO pathway
ko04622   
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