KEGG   PATHWAY: phas04622
Entry
phas04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Phyllostomus hastatus (greater spear-nosed bat)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
phas04622  RIG-I-like receptor signaling pathway
phas04622

Organism
Phyllostomus hastatus (greater spear-nosed bat) [GN:phas]
Gene
123819737  DDX58; antiviral innate immune response receptor RIG-I isoform X1 [KO:K12646] [EC:5.6.2.6]
123813652  IFIH1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
123814737  ZNFX1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
123814801  MAVS; mitochondrial antiviral-signaling protein [KO:K12648]
123817121  DHX58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
123808159  TRAF3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
123813487  TANK; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
123830453  AZI2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
123817730  TBKBP1; TANK-binding kinase 1-binding protein 1 isoform X1 [KO:K12652]
123823081  IKBKG; NF-kappa-B essential modulator isoform X1 [KO:K07210]
123812878  TBK1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
123820660  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
123830327  IRF3; interferon regulatory factor 3 [KO:K05411]
123807315  IRF7; interferon regulatory factor 7 [KO:K09447]
123819865  interferon alpha-4-like [KO:K05414]
123819961  interferon alpha-4-like [KO:K05414]
123819962  interferon alpha-4-like [KO:K05414]
123820149  interferon beta-like [KO:K05415]
123820232  IFNB1; interferon beta [KO:K05415]
123820037  interferon omega-2-like [KO:K05440]
123820099  interferon omega-2-like [KO:K05440]
123820105  interferon omega-2-like [KO:K05440]
123820115  interferon omega-2-like [KO:K05440]
123820116  interferon omega-2-like [KO:K05440]
123819641  IFNE; interferon epsilon [KO:K05442]
123819774  IFNK; interferon kappa [KO:K05441]
123806080  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
123829338  FADD; FAS-associated death domain protein [KO:K02373]
123820769  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
123824482  CASP8; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
123824433  CASP10; caspase-10 [KO:K04400] [EC:3.4.22.63]
123828668  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
123807522  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
123823806  NFKBIB; NF-kappa-B inhibitor beta [KO:K02581]
123825207  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
123806785  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
123829518  RELA; transcription factor p65 [KO:K04735]
123823598  TRAF2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
123821751  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
123809979  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
123819501  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
123820887  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
123806902  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
123807193  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
123822258  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
123822259  MAPK14; mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
123816206  MAPK12; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
123816247  MAPK11; mitogen-activated protein kinase 11 isoform X1 [KO:K04441] [EC:2.7.11.24]
123831231  CXCL8; interleukin-8 [KO:K10030]
123831253  C-X-C motif chemokine 15-like [KO:K10030]
123810433  TNF; tumor necrosis factor isoform X1 [KO:K03156]
123827188  IL12A; interleukin-12 subunit alpha [KO:K05406]
123811597  IL12B; interleukin-12 subunit beta [KO:K05425]
123831223  CXCL10; C-X-C motif chemokine 10 [KO:K12671]
123804313  ADAR; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
123817736  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
123805812  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
123826229  RNF125; E3 ubiquitin-protein ligase RNF125 [KO:K12170] [EC:2.3.2.27]
123831609  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
123821783  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
123818024  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
123818278  NLRX1; NLR family member X1 [KO:K12653]
123811122  STING1; stimulator of interferon genes protein isoform X1 [KO:K12654]
123832761  OTUD5; OTU domain-containing protein 5 [KO:K12655] [EC:3.4.19.12]
123804340  SIKE1; suppressor of IKBKE 1 [KO:K12656]
123832654  DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
123828432  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
123829292  TKFC; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
phas04010  MAPK signaling pathway
phas04120  Ubiquitin mediated proteolysis
phas04210  Apoptosis
phas04630  JAK-STAT signaling pathway
KO pathway
ko04622   
LinkDB

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