KEGG   PATHWAY: tros04120
Entry
tros04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Triplophysa rosa
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
tros04120  Ubiquitin mediated proteolysis
tros04120

Other DBs
GO: 0016567
Organism
Triplophysa rosa [GN:tros]
Gene
130546452  ubc; polyubiquitin-C [KO:K08770]
130568462  ubb; polyubiquitin-B [KO:K08770]
130553759  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
130556289  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
130545602  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
130556907  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
130564653  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
130551746  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
130571190  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
130552476  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
130563879  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
130556175  ube2al; ubiquitin conjugating enzyme E2 A, like [KO:K10573] [EC:2.3.2.23]
130570689  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
130556956  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
130563791  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
130569638  ube2d1b; ubiquitin-conjugating enzyme E2 D1b [KO:K06689] [EC:2.3.2.23]
130559221  ube2d3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
130560131  ube2d1a; ubiquitin-conjugating enzyme E2 D1a [KO:K06689] [EC:2.3.2.23]
130568049  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
130563375  ube2d2l; ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like [KO:K06689] [EC:2.3.2.23]
130557619  ube2e2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
130567424  ube2e1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
130556022  ube2e3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
130553383  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
130570177  ube2g1b; ubiquitin-conjugating enzyme E2G 1b [KO:K10575] [EC:2.3.2.23]
130567923  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
130557219  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
130547698  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
130547193  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
130561357  ube2ia; SUMO-conjugating enzyme UBC9-B [KO:K10577]
130561889  SUMO-conjugating enzyme UBC9-like [KO:K10577]
130565714  ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
130544978  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
130552829  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
130550928  ubiquitin-conjugating enzyme E2 K-like [KO:K04649] [EC:2.3.2.23]
130545857  ube2l3a; ubiquitin-conjugating enzyme E2 L3a [KO:K04552] [EC:2.3.2.23]
130548479  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
130550615  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
130547869  ube2nb; ubiquitin-conjugating enzyme E2Nb [KO:K10580] [EC:2.3.2.23]
130562594  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
130556447  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
130551711  ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
130567148  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
130563067  ube2q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
130570407  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
130553915  cdc34b; cell division cycle 34 homolog (S. cerevisiae) b [KO:K02207] [EC:2.3.2.23]
130549029  cdc34a; cell division cycle 34 homolog (S. cerevisiae) a [KO:K02207] [EC:2.3.2.23]
130557478  ube2s; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
130554013  ube2wa; probable ubiquitin-conjugating enzyme E2 W-A [KO:K10688] [EC:2.3.2.23 2.3.2.25]
130547422  ube2wb; probable ubiquitin-conjugating enzyme E2 W-B [KO:K10688] [EC:2.3.2.23 2.3.2.25]
130561592  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
130560812  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
130556778  ube3a; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
130546732  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
130556039  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
130561707  smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
130561792  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
130572023  itchb; itchy E3 ubiquitin protein ligase b [KO:K05632] [EC:2.3.2.26]
130556291  itcha; itchy E3 ubiquitin protein ligase a [KO:K05632] [EC:2.3.2.26]
130549826  NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
130551722  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
130562437  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
130563309  nedd4a; E3 ubiquitin-protein ligase NEDD4-like [KO:K10591] [EC:2.3.2.26]
130569809  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
130571897  huwe1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
130557697  ubr5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
130557462  E3 ubiquitin-protein ligase UBR5-like isoform X1 [KO:K10593] [EC:2.3.2.26]
130571860  herc1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
130569769  probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
130557380  herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
130553140  herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
130558769  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
130564370  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
130545464  ube4b; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
130546720  E3 ubiquitin-protein ligase CHIP-like isoform X1 [KO:K09561] [EC:2.3.2.27]
130546721  stub1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
130546526  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
130564037  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
130568124  ubox5; RING finger protein 37 [KO:K10600]
130548220  mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
130564410  cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
130545654  cblb; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
130557900  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
130559188  prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
130562929  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
130561567  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
130545902  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
130554956  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
130570288  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
130570136  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
130563400  xiap; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
130545117  birc7; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 7 [KO:K16061]
130553000  pias1a; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
130562700  pias1b; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
130566302  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
130553864  pias4b; E3 SUMO-protein ligase PIAS4b isoform X1 [KO:K16065] [EC:2.3.2.27]
130549160  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
130564142  syvn1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
130554864  aire; LOW QUALITY PROTEIN: autoimmune regulator [KO:K10603]
130569554  mgrn1a; probable E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
130561910  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
130559229  fancl; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
130555381  mid1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
130566906  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
130546231  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
130561726  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
130547162  cul1b; cullin-1b [KO:K03347]
130554753  cul1a; cullin-1a [KO:K03347]
130570661  skp1; S-phase kinase-associated protein 1 [KO:K03094]
130564100  fbxw11a; F-box and WD repeat domain-containing 11-A isoform X1 [KO:K03362]
130546385  fbxw11b; F-box and WD repeat domain-containing 11-B isoform X1 [KO:K03362]
130570465  skp2; S-phase kinase-associated protein 2 [KO:K03875]
130552659  fbxw7; F-box/WD repeat-containing protein 7 [KO:K10260]
130571346  fbxo2; F-box only protein 2 isoform X1 [KO:K10099]
130567889  fbxo4; F-box only protein 4 [KO:K10291]
130546774  cul2; cullin-2 [KO:K03870]
130554014  elocb; elongin C paralog b [KO:K03872]
130547113  eloca; elongin C paralog a [KO:K03872]
130569483  elongin-B-like [KO:K03873]
130561818  elob; elongin-B [KO:K03873]
130547799  vhll; von Hippel-Lindau-like protein [KO:K03871]
130556707  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
130565315  cul3b; cullin-3b [KO:K03869]
130553968  cul3a; cullin-3a [KO:K03869]
130554975  keap1a; kelch-like ECH-associated protein 1A isoform X1 [KO:K10456]
130556726  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
130565662  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
130556123  si:rp71-68n21.9; kelch-like protein 9 isoform X1 [KO:K10447]
130545646  rhobtb2b; rho-related BTB domain-containing protein 2 [KO:K07868]
130567908  rhobtb2a; rho-related BTB domain-containing protein 2 [KO:K07868]
130568388  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
130568873  rhobtb1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
130553551  cul4a; cullin-4A isoform X1 [KO:K10609]
130563490  cul4b; cullin-4B [KO:K10609]
130562778  ddb1; DNA damage-binding protein 1 [KO:K10610]
130562738  ddb2; LOW QUALITY PROTEIN: DNA damage-binding protein 2 [KO:K10140]
130567813  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
130551907  det1; DET1 homolog [KO:K10571]
130561175  rnf7; RING-box protein 2 [KO:K10611]
130570030  cul5b; cullin-5 isoform X1 [KO:K10612]
130564987  cul5a; cullin-5a isoform X1 [KO:K10612]
130553160  socs1b; suppressor of cytokine signaling 1b isoform X1 [KO:K04694]
130561579  socs1a; suppressor of cytokine signaling 1a [KO:K04694]
130569602  socs3b; LOW QUALITY PROTEIN: suppressor of cytokine signaling 3b [KO:K04696]
130562217  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
130549336  fbxw8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
130557288  anapc11; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 11 [KO:K03358]
130566764  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
130554783  cdc20; cell division cycle protein 20 homolog [KO:K03363]
130553981  fzr1b; fizzy-related protein homolog [KO:K03364]
130568598  fzr1a; fizzy/cell division cycle 20 related 1a [KO:K03364]
130559650  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
130562223  cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
130566388  anapc4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
130568472  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
130555633  cdc16; cell division cycle protein 16 homolog [KO:K03353]
130567772  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
130570495  cdc23; cell division cycle protein 23 homolog [KO:K03355]
130545029  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
130548305  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
130570211  anapc13; anaphase-promoting complex subunit 13 isoform X1 [KO:K12456]
130565263  anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
130568770  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
tros03050  Proteasome
KO pathway
ko04120   
LinkDB

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