KEGG   PATHWAY: gas04120
Entry
gas04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Gracilinanus agilis (agile gracile opossum)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
gas04120  Ubiquitin mediated proteolysis
gas04120

Other DBs
GO: 0016567
Organism
Gracilinanus agilis (agile gracile opossum) [GN:gas]
Gene
123230700  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
123230920  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
123230935  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
123230960  ELOB; elongin-B [KO:K03873]
123231100  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
123231343  [KO:K03178] [EC:6.2.1.45]
123231497  FBXO4; F-box only protein 4 [KO:K10291]
123231512  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
123231826  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
123231962  [KO:K02977]
123232052  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
123232249  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
123232323  UBC; polyubiquitin-C [KO:K04551]
123232349  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
123232396  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
123232546  MGRN1; E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
123232551  [KO:K10604] [EC:2.3.2.27]
123232961  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
123233010  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
123233035  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
123233042  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
123233047  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
123233395  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
123234164  NEDD4; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
123234352  PML; protein PML [KO:K10054] [EC:2.3.2.-]
123234483  [KO:K03353]
123234671  [KO:K10580] [EC:2.3.2.23]
123234716  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
123234904  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
123235109  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
123235342  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
123235345  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
123235530  [KO:K04551]
123235658  CDC23; cell division cycle protein 23 homolog [KO:K03355]
123235711  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
123235712  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
123235713  [KO:K02977]
123235747  [KO:K10611]
123236190  DET1; DET1 homolog isoform X1 [KO:K10571]
123236708  [KO:K06689] [EC:2.3.2.23]
123236740  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
123236869  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
123236950  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
123237055  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
123237107  ERCC8; DNA excision repair protein ERCC-8 [KO:K10570]
123237183  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
123237269  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
123237289  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
123237320  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
123237382  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
123237451  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
123237495  FBXW11; F-box/WD repeat-containing protein 11 [KO:K03362]
123237557  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
123237757  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
123238033  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
123238056  HERC1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
123238064  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 isoform X1 [KO:K10582] [EC:2.3.2.23]
123238130  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
123238618  ELOC; elongin-C [KO:K03872]
123238988  [KO:K16060]
123239428  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
123239793  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
123239954  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
123239996  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
123240112  [KO:K03872]
123240190  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
123240291  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
123240490  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
123240600  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
123240870  [KO:K16060]
123241355  CUL5; cullin-5 [KO:K10612]
123241731  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
123241994  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
123242098  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
123242116  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
123242180  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
123242395  CBLB; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
123242551  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
123242575  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
123242615  CUL4A; cullin-4A isoform X1 [KO:K10609]
123242755  CUL3; cullin-3 isoform X1 [KO:K03869]
123242768  TRIP12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
123243024  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
123243046  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
123243096  FBXO2; F-box only protein 2 [KO:K10099]
123243162  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
123243802  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
123243928  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
123244226  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
123244299  CDC20; cell division cycle protein 20 homolog [KO:K03363]
123244363  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
123244474  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
123244567  CDC27; cell division cycle protein 27 homolog [KO:K03350]
123244745  [KO:K10609]
123244751  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
123244808  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
123244835  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
123245244  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
123245295  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
123245310  [KO:K10574] [EC:2.3.2.23]
123245322  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
123245336  [KO:K10687] [EC:2.3.2.34]
123245715  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
123245741  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
123245837  AIRE; autoimmune regulator [KO:K10603]
123245905  COP1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
123246232  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
123246419  [KO:K10613]
123246664  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
123247505  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
123247650  [KO:K04696]
123247660  [KO:K03358]
123247701  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
123247779  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
123248749  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
123249010  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
123249129  [KO:K20217] [EC:2.3.2.23]
123249506  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
123249621  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
123249627  CUL2; cullin-2 isoform X1 [KO:K03870]
123249675  CUL1; cullin-1 [KO:K03347]
123249759  [KO:K20217] [EC:2.3.2.23]
123250129  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
123250747  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
123250926  DDB1; DNA damage-binding protein 1 [KO:K10610]
123250986  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
123251148  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
123251204  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
123251253  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
123251298  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
123251329  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
123251360  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
123251367  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
123251542  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
123251554  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
123251773  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
123251829  [KO:K06643] [EC:2.3.2.27]
123251865  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
123251960  [KO:K03094]
123252908  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
123253017  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
123253069  DDB2; DNA damage-binding protein 2 [KO:K10140]
123253113  [KO:K10580] [EC:2.3.2.23]
123253300  UBE2W; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
123253440  [KO:K06689] [EC:2.3.2.23]
123253444  [KO:K06689] [EC:2.3.2.23]
123253478  CUL4B; cullin-4B [KO:K10609]
123253493  [KO:K04725] [EC:2.3.2.27]
123253581  [KO:K03364]
123253589  [KO:K10592] [EC:2.3.2.26]
123253673  [KO:K10140]
123253687  KLHL13; kelch-like protein 13 [KO:K10447]
123253836  [KO:K10592] [EC:2.3.2.26]
123253934  [KO:K03364]
123254198  [KO:K03178] [EC:6.2.1.45]
123254555  [KO:K06688] [EC:2.3.2.23]
123254655  [KO:K10575] [EC:2.3.2.23]
123254801  [KO:K03364]
123254990  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
123255045  [KO:K10447]
123255154  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
123255279  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
123255867  [KO:K22518] [EC:2.3.2.27]
123256686  [KO:K03364]
123256693  [KO:K03364]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
gas03050  Proteasome
KO pathway
ko04120   

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