Entry
Name
Endocytosis - Gallus gallus (chicken)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Gallus gallus (chicken) [GN:
gga ]
Gene
100857269 RAB11FIP3; rab11 family-interacting protein 3 isoform X1 [KO:K12485 ]
100858913 SMAP1; stromal membrane-associated protein 1 isoform X1 [KO:K12486 ]
100859134 HLA-F10AL4; class I histocompatibility antigen, F10 alpha chain [KO:K06751 ]
100859374 MHCIA2; class I histocompatibility antigen, F10 alpha chain isoform X1 [KO:K06751 ]
100859879 VPS37D; vacuolar protein sorting-associated protein 37D [KO:K12185 ]
101748842 PARD6A; partitioning defective 6 homolog alpha isoform X1 [KO:K06093 ]
101752218 ARPC5L; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
395132 SMAD3; mothers against decapentaplegic homolog 3 [KO:K23605 ]
395199 IL2RG; cytokine receptor common subunit gamma isoform 2 precursor [KO:K05070 ]
395247 SMAD2Z; mothers against decapentaplegic homolog 2 [KO:K04500 ]
395294 IL2RA; interleukin-15 receptor subunit alpha precursor [KO:K05068 ]
395817 IGF2R; cation-independent mannose-6-phosphate receptor precursor [KO:K06564 ]
395917 CDC42; cell division control protein 42 homolog precursor [KO:K04393 ]
395930 RABEP1; rab GTPase-binding effector protein 1 [KO:K12480 ]
396418 CAPZB; capping protein (actin filament) muscle Z-line, beta isoform 1 [KO:K10365 ]
396521 CAPZA1; F-actin-capping protein subunit alpha-1 [KO:K10364 ]
415750 VPS35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
415841 CHMP1A; charged multivesicular body protein 1a [KO:K12197 ]
415976 IQSEC1; IQ motif and SEC7 domain-containing protein 1 isoform X2 [KO:K12495 ]
416051 ARPC4; actin-related protein 2/3 complex subunit 4 [KO:K05755 ]
416196 ARAP3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490 ]
416490 ARPC1B; actin-related protein 2/3 complex subunit 1B [KO:K05757 ]
416765 CLTCL1; clathrin heavy chain 2 isoform X5 [KO:K04646 ]
416835 VPS37B; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
416837 ARPC3; actin-related protein 2/3 complex subunit 3 [KO:K05756 ]
416867 VPS29; vacuolar protein sorting-associated protein 29 [KO:K18467 ]
416931 VPS29L; vacuolar protein sorting 29 homolog [KO:K18467 ]
417057 MHCIA6; class I histocompatibility antigen, F10 alpha chain [KO:K06751 ]
417067 MICA; class I histocompatibility antigen, F10 alpha chain-like isoform X1 [KO:K06751 ]
417525 AP2B1; AP-2 complex subunit beta isoform X2 [KO:K11825 ]
417750 WASL; neural Wiskott-Aldrich syndrome protein [KO:K23612 ]
417771 CAPZA2; F-actin-capping protein subunit alpha-2 [KO:K10364 ]
417896 EEA1; early endosome antigen 1 isoform X1 [KO:K12478 ]
418077 WASHC4; WASH complex subunit 4 isoform X1 [KO:K18465 ]
418094 WASHC3; WASH complex subunit 3 isoform X2 [KO:K18463 ]
418146 IQSEC3; IQ motif and SEC7 domain-containing protein 3 isoform X5 [KO:K12495 ]
418224 ARFGAP3; ADP-ribosylation factor GTPase-activating protein 3 [KO:K12493 ]
418461 CHMP2B; charged multivesicular body protein 2b [KO:K12192 ]
418608 SH3KBP1; SH3 domain-containing kinase-binding protein 1 [KO:K12470 ]
418883 VPS36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
419150 CHMP4B; charged multivesicular body protein 4b [KO:K12194 ]
419211 ARFGEF2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442 ]
419241 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 [KO:K12492 ]
419352 PARD6B; partitioning defective 6 homolog beta [KO:K06093 ]
419420 ACAP3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X2 [KO:K12489 ]
419535 CHMP7; charged multivesicular body protein 7 [KO:K15053 ]
419589 LDLRAP1; low density lipoprotein receptor adapter protein 1 [KO:K12474 ]
419641 SMAP2; stromal membrane-associated protein 2 [KO:K12486 ]
419738 VPS26B; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
420021 VPS25; vacuolar protein-sorting-associated protein 25 isoform X2 [KO:K12189 ]
420147 EPS15L1; epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
420170 ARFGEF1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 [KO:K18442 ]
420201 CHMP4C; charged multivesicular body protein 4c [KO:K24782 ]
420439 ACTR3B; actin-related protein 3B isoform X2 [KO:K18584 ]
420517 STAM; signal transducing adapter molecule 1 [KO:K04705 ]
420634 WIPF3; WAS/WASL-interacting protein family member 3 isoform X1 [KO:K19475 ]
420725 PDCD6IP; programmed cell death 6-interacting protein [KO:K12200 ]
420901 VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196 ]
420968 CHMP5; charged multivesicular body protein 5 [KO:K12198 ]
421532 RAB4A; ras-related protein Rab-4A isoform X1 [KO:K07879 ]
421674 VTA1; vacuolar protein sorting-associated protein VTA1 homolog isoform X2 [KO:K12199 ]
421982 NUMBL; low density lipoprotein receptor adapter protein 1 isoform X1 [KO:K12474 ]
422143 CHMP1B; charged multivesicular body protein 1b [KO:K12197 ]
422732 VPS37A; vacuolar protein sorting-associated protein 37A [KO:K12185 ]
422918 CHMP3; charged multivesicular body protein 3 [KO:K12193 ]
422952 RAB11FIP5; rab11 family-interacting protein 5 isoform X2 [KO:K12484 ]
423023 VPS37C; vacuolar protein sorting-associated protein 37C [KO:K12185 ]
423082 TSG101; tumor susceptibility gene 101 protein [KO:K12183 ]
423187 ARFGAP2; ADP-ribosylation factor GTPase-activating protein 2 [KO:K12493 ]
423687 RUFY2; RUN and FYVE domain-containing protein 2 isoform X3 [KO:K12482 ]
423696 VPS26A; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
423758 GBF1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
423760 PSD; PH and SEC7 domain-containing protein 1 isoform X1 [KO:K12494 ]
423924 RAB11FIP2; rab11 family-interacting protein 2 [KO:K12484 ]
424024 AGAP1; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X9 [KO:K12491 ]
424143 WIPF1; WAS/WASL-interacting protein family member 1 [KO:K19475 ]
424228 BIN1; myc box-dependent-interacting protein 1 [KO:K12562 ]
424317 STAM2; signal transducing adapter molecule 2 [KO:K04705 ]
424633 EPS15; epidermal growth factor receptor substrate 15 [KO:K12472 ]
424639 ZFYVE9; zinc finger FYVE domain-containing protein 9 [KO:K04679 ]
424698 DNAJC6; putative tyrosine-protein phosphatase auxilin [KO:K09526 ]
424895 ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 [KO:K12489 ]
425389 BF2; Major histocompatibility complex class I antigen BF2 precursor [KO:K06751 ]
425637 VPS4A; vacuolar protein sorting-associated protein 4A [KO:K12196 ]
426519 RUFY1; RUN and FYVE domain-containing protein 1 [KO:K12482 ]
427315 ZFYVE16; zinc finger FYVE domain-containing protein 16 isoform X1 [KO:K04679 ]
427605 PSD2; PH and SEC7 domain-containing protein 2 isoform X1 [KO:K12494 ]
427808 RAB11FIP4; rab11 family-interacting protein 4 isoform X1 [KO:K12485 ]
427929 CAPZA3; F-actin-capping protein subunit alpha-3 [KO:K10364 ]
428385 ASAP1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X5 [KO:K12488 ]
428511 PARD6G; partitioning defective 6 homolog gamma isoform X1 [KO:K06093 ]
428673 CHMP6; charged multivesicular body protein 6 [KO:K12195 ]
428675 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
428790 ARAP2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X2 [KO:K18440 ]
429041 ARPC2; actin-related protein 2/3 complex subunit 2 [KO:K05758 ]
429075 ARPC5; actin-related protein 2/3 complex subunit 5 [KO:K05754 ]
429809 ASAP3; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12488 ]
430600 MHCIA7; class I histocompatibility antigen, F10 alpha chain-like [KO:K06751 ]
430741 VPS45; vacuolar protein sorting-associated protein 45 [KO:K12479 ]
430750 RAB31; ras-related protein Rab-31 isoform X1 [KO:K07891 ]
768507 AGAP3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12491 ]
768599 ASAP2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488 ]
769000 SMAD2W; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500 ]
769389 DDEFL1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
770269 ARPC1A; actin-related protein 2/3 complex subunit 1A [KO:K05757 ]
770334 PSD3; PH and SEC7 domain-containing protein 3 isoform X2 [KO:K12494 ]
770622 RAB11FIP1; rab11 family-interacting protein 1 isoform X1 [KO:K12484 ]
771898 WIPF2; WAS/WASL-interacting protein family member 2 isoform X2 [KO:K19475 ]
776036 CHMP2A; charged multivesicular body protein 2a [KO:K12191 ]
776173 ACAP1L; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 [KO:K12489 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
gga04060 Cytokine-cytokine receptor interaction
gga04070 Phosphatidylinositol signaling system
gga04130 SNARE interactions in vesicular transport
KO pathway