Entry
Name
Lysosome biogenesis - Lemur catta (Ring-tailed lemur)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Lemur catta (Ring-tailed lemur) [GN:
lcat ]
Gene
123620962 ATP6V0A1; V-type proton ATPase 116 kDa subunit a1 isoform X1 [KO:K02154 ]
123621035 PLEKHM1; pleckstrin homology domain-containing family M member 1 [KO:K23282 ]
123621651 NPC1; NPC intracellular cholesterol transporter 1 isoform X1 [KO:K12385 ]
123621659 OSBPL1A; oxysterol-binding protein-related protein 1 isoform X1 [KO:K20174 ]
123622048 LAMP5; lysosome-associated membrane glycoprotein 5 isoform X1 [KO:K28774 ]
123622155 TMEM175; endosomal/lysosomal potassium channel TMEM175 isoform X1 [KO:K24915 ]
123622222 BLOC1S6; biogenesis of lysosome-related organelles complex 1 subunit 6 [KO:K20188 ]
123622469 BLOC1S4; biogenesis of lysosome-related organelles complex 1 subunit 4 [KO:K08366 ]
123622527 VPS16; vacuolar protein sorting-associated protein 16 homolog isoform X1 [KO:K20180 ]
123623010 MITF; microphthalmia-associated transcription factor isoform X1 [KO:K09455 ]
123623455 VPS13C; vacuolar protein sorting-associated protein 13C isoform X1 [KO:K19525 ]
123623565 ARL8B; LOW QUALITY PROTEIN: ADP-ribosylation factor-like protein 8B [KO:K07955 ]
123623963 BLOC1S3; biogenesis of lysosome-related organelles complex 1 subunit 3 [KO:K20186 ]
123625137 VPS35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
123625652 RAB7A; LOW QUALITY PROTEIN: ras-related protein Rab-7a [KO:K07897 ]
123626061 VPS29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
123626077 VPS33A; vacuolar protein sorting-associated protein 33A isoform X1 [KO:K20182 ]
123626492 ATP6V1B2; V-type proton ATPase subunit B, brain isoform [KO:K02147 ]
123626753 VPS18; vacuolar protein sorting-associated protein 18 homolog [KO:K20181 ]
123627981 VAMP7; vesicle-associated membrane protein 7 isoform X1 [KO:K08515 ]
123628798 LAMP2; lysosome-associated membrane glycoprotein 2 isoform X1 [KO:K06528 ]
123630307 LAMP3; lysosome-associated membrane glycoprotein 3 isoform X1 [KO:K06562 ]
123631444 GNPTG; N-acetylglucosamine-1-phosphotransferase subunit gamma [KO:K10087 ]
123631452 TELO2; telomere length regulation protein TEL2 homolog isoform X1 [KO:K11137 ]
123631490 MLST8; target of rapamycin complex subunit LST8 isoform X1 [KO:K08266 ]
123631502 ATP6V0C; V-type proton ATPase 16 kDa proteolipid subunit [KO:K02155 ]
123631618 LAMTOR4; ragulator complex protein LAMTOR4 isoform X1 [KO:K20399 ]
123631721 ATP6V1G2; V-type proton ATPase subunit G 2 isoform X1 [KO:K02152 ]
123631933 SLC29A1; equilibrative nucleoside transporter 1 isoform X1 [KO:K15014 ]
123632388 LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor [KO:K19363 ]
123633131 OSTM1; osteopetrosis-associated transmembrane protein 1 [KO:K23863 ]
123633156 FIG4; polyphosphoinositide phosphatase isoform X1 [KO:K22913 ] [EC:3.1.3.-]
123633432 IGF2R; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
123634235 ATP6V0B; V-type proton ATPase 21 kDa proteolipid subunit isoform X1 [KO:K03661 ]
123636596 ATP6V1C2; V-type proton ATPase subunit C 2 isoform X1 [KO:K02148 ]
123636627 LAPTM4A; lysosomal-associated transmembrane protein 4A [KO:K12387 ]
123637027 ATP6V1B1; V-type proton ATPase subunit B, kidney isoform [KO:K02147 ]
123638241 BLOC1S5; biogenesis of lysosome-related organelles complex 1 subunit 5 isoform X1 [KO:K20187 ]
123638582 MFSD8; major facilitator superfamily domain-containing protein 8 isoform X1 [KO:K12307 ]
123639283 GGA1; ADP-ribosylation factor-binding protein GGA1 isoform X1 [KO:K12404 ]
123639381 GNPTAB; N-acetylglucosamine-1-phosphotransferase subunits alpha/beta isoform X1 [KO:K08239 ] [EC:2.7.8.17 ]
123639728 BLOC1S1; biogenesis of lysosome-related organelles complex 1 subunit 1 [KO:K20185 ]
123641135 VPS26B; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
123641494 VPS11; vacuolar protein sorting-associated protein 11 homolog [KO:K20179 ]
123641901 SLC29A2; equilibrative nucleoside transporter 2 isoform X1 [KO:K15014 ]
123642930 OSBPL5; oxysterol-binding protein-related protein 5 isoform X1 [KO:K20464 ]
123643687 OSBPL6; oxysterol-binding protein-related protein 6 isoform X1 [KO:K20463 ]
123644013 SLC11A1; LOW QUALITY PROTEIN: natural resistance-associated macrophage protein 1 [KO:K12347 ]
123644572 LAPTM4B; lysosomal-associated transmembrane protein 4B [KO:K12387 ]
123644632 DEPTOR; DEP domain-containing mTOR-interacting protein isoform X1 [KO:K20402 ]
123646015 VPS13A; vacuolar protein sorting-associated protein 13A isoform X1 [KO:K19525 ]
123646682 SLC2A6; solute carrier family 2, facilitated glucose transporter member 6 [KO:K08144 ]
123647618 ZFYVE26; zinc finger FYVE domain-containing protein 26 isoform X1 [KO:K19027 ]
123647669 ATP6V0A4; V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154 ]
123647683 VPS41; vacuolar protein sorting-associated protein 41 homolog isoform X1 [KO:K20184 ]
123647778 OSBPL3; oxysterol-binding protein-related protein 3 isoform X1 [KO:K20463 ]
123647986 SLC38A9; sodium-coupled neutral amino acid transporter 9 isoform X1 [KO:K14995 ]
123648967 CLN5; ceroid-lipofuscinosis neuronal protein 5 isoform X1 [KO:K12390 ]
123650132 BLOC1S2; biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X1 [KO:K16750 ]
123650389 SLC29A3; equilibrative nucleoside transporter 3 isoform X1 [KO:K15014 ]
123650429 VPS26A; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
123650672 RPTOR; regulatory-associated protein of mTOR isoform X1 [KO:K07204 ]
123650784 GGA3; ADP-ribosylation factor-binding protein GGA3 isoform X1 [KO:K12404 ]
Compound
Reference
Authors
Eskelinen EL, Tanaka Y, Saftig P
Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
Journal
Reference
Authors
Neufeld EF
Title
Lysosomal storage diseases.
Journal
Reference
Authors
von Figura K, Hasilik A
Title
Lysosomal enzymes and their receptors.
Journal
Reference
Authors
Janvier K, Bonifacino JS
Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
Journal
Reference
Authors
Vergarajauregui S, Puertollano R
Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
Journal
Reference
Authors
Jaskolka MC, Winkley SR, Kane PM
Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
Journal
Reference
Authors
Majdoul S, Compton AA
Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
Journal
Reference
Authors
Saftig P, Klumperman J
Title
Lysosome biogenesis and lysosomal membrane proteins: trafficking meets function.
Journal
Reference
Authors
Savini M, Zhao Q, Wang MC
Title
Lysosomes: Signaling Hubs for Metabolic Sensing and Longevity.
Journal
Reference
Authors
Meyer-Schwesinger C
Title
Lysosome function in glomerular health and disease.
Journal
Reference
Authors
Allemailem KS, Almatroudi A, Alrumaihi F, Almatroodi SA, Alkurbi MO, Basfar GT, Rahmani AH, Khan AA
Title
Novel Approaches of Dysregulating Lysosome Functions in Cancer Cells by Specific Drugs and Its Nanoformulations: A Smart Approach of Modern Therapeutics.
Journal
Reference
Authors
Zhang W, Yang X, Li Y, Yu L, Zhang B, Zhang J, Cho WJ, Venkatarangan V, Chen L, Burugula BB, Bui S, Wang Y, Duan C, Kitzman JO, Li M
Title
GCAF(TMEM251) regulates lysosome biogenesis by activating the mannose-6-phosphate pathway.
Journal
Reference
Authors
Liu Q, Wang W, Xu L, Zhang Q, Wang H
Title
The host mannose-6-phosphate pathway and viral infection.
Journal
Reference
Authors
He Y, Fan Y, Ahmadpoor X, Wang Y, Li ZA, Zhu W, Lin H
Title
Targeting lysosomal quality control as a therapeutic strategy against aging and diseases.
Journal
Reference
Authors
Radulovic M, Yang C, Stenmark H
Title
Lysosomal membrane homeostasis and its importance in physiology and disease.
Journal
Reference
Authors
Watson ET, Wegeng WR, Aravani S, Ernst AM, von Blume J
Title
Mechanistic insights into cargo sorting and export from the Golgi apparatus.
Journal
Related pathway
lcat04130 SNARE interactions in vesicular transport
lcat04620 Toll-like receptor signaling pathway
KO pathway