KEGG   PATHWAY: onl04622
Entry
onl04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Oreochromis niloticus (Nile tilapia)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
onl04622  RIG-I-like receptor signaling pathway
onl04622

Organism
Oreochromis niloticus (Nile tilapia) [GN:onl]
Gene
100534479  il-8; interleukin-8 precursor [KO:K10030]
100534578  tnfb; tumor necrosis factor b (TNF superfamily, member 2) [KO:K03156]
100689877  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X3 [KO:K04427] [EC:2.7.11.25]
100690759  [KO:K05414]
100690857  [KO:K05425]
100691025  [KO:K05414]
100691089  nfkbia; NF-kappa-B inhibitor alpha [KO:K04734]
100691290  [KO:K05414]
100691561  [KO:K05414]
100691708  [KO:K04734]
100692379  [KO:K04440] [EC:2.7.11.24]
100692416  [KO:K04441] [EC:2.7.11.24]
100692489  tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
100692869  [KO:K04467] [EC:2.7.11.10]
100693109  znfx1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
100693447  [KO:K04441] [EC:2.7.11.24]
100693654  [KO:K08601] [EC:3.4.19.12]
100693748  [KO:K05406]
100693893  atg12; ubiquitin-like protein ATG12 [KO:K08336]
100693931  [KO:K12652]
100695080  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
100695399  [KO:K05425]
100695544  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
100696424  [KO:K05414]
100696546  atg5; autophagy protein 5 [KO:K08339]
100696797  otud5; LOW QUALITY PROTEIN: OTU domain-containing protein 5 [KO:K12655] [EC:3.4.19.12]
100697006  tmem173; stimulator of interferon genes protein [KO:K12654]
100697308  [KO:K03173] [EC:2.3.2.27]
100697317  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
100697746  [KO:K03156]
100698072  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
100698148  [KO:K04467] [EC:2.7.11.10]
100698610  [KO:K12671]
100699484  [KO:K04441] [EC:2.7.11.24]
100699877  [KO:K04427] [EC:2.7.11.25]
100700523  [KO:K12671]
100700788  [KO:K12671]
100700811  [KO:K08601] [EC:3.4.19.12]
100700904  [KO:K04441] [EC:2.7.11.24]
100701183  [KO:K04441] [EC:2.7.11.24]
100701376  tbkbp1; TANK-binding kinase 1-binding protein 1 isoform X2 [KO:K12652]
100701404  [KO:K05406]
100701947  [KO:K08601] [EC:3.4.19.12]
100702092  traf2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
100702139  [KO:K04398] [EC:3.4.22.61]
100702187  nfkb1; LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit [KO:K02580]
100702235  [KO:K04440] [EC:2.7.11.24]
100702578  traf3; TNF receptor-associated factor 3 [KO:K03174]
100702601  ifne; interferon epsilon [KO:K05442]
100702615  [KO:K12649] [EC:5.6.2.6]
100702632  [KO:K04441] [EC:2.7.11.24]
100702676  [KO:K04398] [EC:3.4.22.61]
100702680  cyld; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
100702883  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
100702954  [KO:K05411]
100703536  ifih1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
100703551  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
100703664  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
100704139  [KO:K04440] [EC:2.7.11.24]
100704346  [KO:K12650]
100704511  azi2; 5-azacytidine-induced protein 2 isoform X2 [KO:K12651]
100704886  [KO:K05414]
100705112  ripk1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
100705925  [KO:K10652] [EC:2.3.2.27]
100706192  irf7; interferon regulatory factor 7 [KO:K09447]
100706412  [KO:K05414]
100706560  [KO:K04441] [EC:2.7.11.24]
100706746  [KO:K05425]
100706963  fadd; FAS-associated death domain protein [KO:K02373]
100707103  adar; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
100707676  rela; transcription factor p65 isoform X1 [KO:K04735]
100707974  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
100708206  [KO:K11594] [EC:5.6.2.7]
100708442  [KO:K03173] [EC:2.3.2.27]
100710322  mavs; mitochondrial antiviral-signaling protein [KO:K12648]
100711054  mapk10; mitogen-activated protein kinase 10 isoform X3 [KO:K04440] [EC:2.7.11.24]
100711119  [KO:K10652] [EC:2.3.2.27]
100711762  ddx3x; ATP-dependent RNA helicase DDX3X isoform X11 [KO:K11594] [EC:5.6.2.7]
100711888  tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
100712294  sike1; suppressor of IKBKE 1 [KO:K12656]
102079913  [KO:K04398] [EC:3.4.22.61]
102081105  [KO:K03156]
102082729  [KO:K10652] [EC:2.3.2.27]
102082882  [KO:K10030]
102083139  [KO:K10030]
102083221  [KO:K10030]
102083274  [KO:K05414]
106098416  [KO:K10030]
109194206  [KO:K04398] [EC:3.4.22.61]
109198733  [KO:K12652]
109201292  [KO:K10030]
109202588  [KO:K10030]
109203135  [KO:K05414]
109203155  [KO:K05414]
109203208  [KO:K05414]
109203209  [KO:K05414]
109203210  [KO:K05414]
109203266  [KO:K05414]
109203267  [KO:K05414]
112841720  [KO:K05414]
112847709  [KO:K05414]
112847710  [KO:K05414]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
onl04010  MAPK signaling pathway
onl04120  Ubiquitin mediated proteolysis
onl04210  Apoptosis
KO pathway
ko04622   

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