KEGG   PATHWAY: cci03040
Entry
cci03040                    Pathway                                
Name
Spliceosome - Coprinopsis cinerea
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
cci03040  Spliceosome
cci03040

Other DBs
GO: 0005681
Organism
Coprinopsis cinerea [GN:cci]
Gene
CC1G_00430  pre-mRNA-processing ATP-dependent RNA helicase PRP5 [KO:K12811] [EC:5.6.2.7]
CC1G_03770  ATP-dependent RNA helicase SUB2 [KO:K12812] [EC:5.6.2.7]
CC1G_02978  pre-mRNA splicing factor [KO:K12813] [EC:5.6.2.6]
CC1G_12010  pre-mRNA splicing factor [KO:K12815] [EC:5.6.2.6]
CC1G_10286  pre-mRNA splicing factor [KO:K12816]
CC1G_13335  pre-mRNA splicing factor [KO:K12817]
CC1G_06591  ATP-dependent RNA helicase DHX8 [KO:K12818] [EC:5.6.2.6]
CC1G_04532  pre-mRNA-splicing factor SLU7 [KO:K12819]
CC1G_06213  ATP-dependent RNA helicase Prp43 [KO:K12820] [EC:5.6.2.6]
CC1G_02631  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 [KO:K12820] [EC:5.6.2.6]
CC1G_05666  SMB [KO:K11086]
CC1G_08522  small nuclear riboprotein Sm-D [KO:K11087]
CC1G_03667  pre-mRNA splicing factor [KO:K11096]
CC1G_04557  small nuclear ribonucleoprotein Sm D3 [KO:K11088]
CC1G_13677  hypothetical protein [KO:K11097]
CC1G_00096  small nuclear riboprotein F [KO:K11098]
CC1G_00108  hypothetical protein [KO:K11099]
CC1G_12379  U1 snRNP 70K protein [KO:K11093]
CC1G_00261  U1 small nuclear ribonucleoprotein A [KO:K11091]
CC1G_01380  hypothetical protein [KO:K11095]
CC1G_08998  pre-mRNA-processing protein prp40 [KO:K12821]
CC1G_03406  hypothetical protein [KO:K12822]
CC1G_14381  RNA helicase [KO:K12823] [EC:5.6.2.7]
CC1G_14624  peptide-binding protein [KO:K12824]
CC1G_10508  small nuclear ribonucleoprotein polypeptide A [KO:K11092]
CC1G_09998  RNA binding protein [KO:K11094]
CC1G_03829  pre-mRNA splicing factor [KO:K12825]
CC1G_01767  splicing factor 3a [KO:K12826]
CC1G_00177  RNA splicing factor PRP9 [KO:K12827]
CC1G_00913  small nuclear ribonucleoprotein [KO:K12828]
CC1G_10184  spliceosome associated protein 145 [KO:K12829]
CC1G_02328  pre-mRNA-splicing factor RSE1 [KO:K12830]
CC1G_04531  pre-mRNA-splicing factor rse1 [KO:K12830]
CC1G_10837  splicing factor 3b subunit 4 [KO:K12831]
CC1G_06614  hypothetical protein [KO:K12832]
CC1G_00173  pre-mRNA branch site protein p14 [KO:K12833]
CC1G_14869  pre-mRNA splicing factor ini1 [KO:K12834]
CC1G_04561  splicing factor U2AF 26 kDa subunit [KO:K12836]
CC1G_09032  rRNA primary transcript binding protein [KO:K12837]
CC1G_13651  hypothetical protein [KO:K12839]
CC1G_04293  DRT111 [KO:K12840]
CC1G_01976  SR140 protein [KO:K12842]
CC1G_14175  small nuclear ribonucleoprotein LSM2 [KO:K12621]
CC1G_01381  hypothetical protein [KO:K12622]
CC1G_04648  U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
CC1G_10275  hypothetical protein [KO:K12624]
CC1G_01502  hypothetical protein [KO:K12625]
CC1G_09105  hypothetical protein [KO:K12626]
CC1G_03551  hypothetical protein [KO:K12627]
CC1G_05238  small nuclear ribonucleoprotein hPrp3 [KO:K12843]
CC1G_00847  U4/U6 snRNP-specific spliceosomal protein [KO:K12662]
CC1G_07963  peptidyl-prolyl cis-trans isomerase H [KO:K09567] [EC:5.2.1.8]
CC1G_01269  U4/U6 small nuclear ribonucleoprotein Prp31 [KO:K12844]
CC1G_01038  small nucleolar ribonucleoprotein SNU13 [KO:K12845]
CC1G_03880  hypothetical protein [KO:K12846]
CC1G_00486  ubiquitin C-terminal hydrolase Ubp10 [KO:K12847]
CC1G_07074  hypothetical protein [KO:K11984]
CC1G_03228  hypothetical protein [KO:K12848]
CC1G_05189  pre-RNA splicing factor 38A [KO:K12849]
CC1G_13743  u5 small nuclear ribonucleoprotein component [KO:K12852]
CC1G_05341  pre-mRNA splicing factor prp1 [KO:K12855]
CC1G_07124  pre-mRNA-processing-splicing factor [KO:K12856]
CC1G_10643  U5 snRNP complex subunit [KO:K12857]
CC1G_11933  pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [KO:K12858] [EC:5.6.2.7]
CC1G_07966  Txnl4a protein [KO:K12859]
CC1G_10289  nuclear matrix protein NMP200 [KO:K10599] [EC:2.3.2.27]
CC1G_11763  CDC5 [KO:K12860]
CC1G_04420  hypothetical protein [KO:K12861]
CC1G_14323  pre-mRNA-splicing factor PRP46 [KO:K12862]
CC1G_04570  hypothetical protein [KO:K12863]
CC1G_00330  DUF1716 domain-containing protein [KO:K12864]
CC1G_13924  heat shock cognate 70 [KO:K03283]
CC1G_13982  heat shock protein [KO:K03283]
CC1G_05804  dnaK-type molecular chaperone bipA [KO:K03283]
CC1G_13867  pre-mRNA-processing protein 45 [KO:K06063]
CC1G_05131  spliceosome complex protein [KO:K12867]
CC1G_10325  pre-mRNA-splicing factor SYF2 [KO:K12868]
CC1G_03601  pre-mRNA-splicing factor CLF1 [KO:K12869]
CC1G_08670  pre-mRNA-splicing factor CLF1 [KO:K12869]
CC1G_07497  pre-mRNA-splicing factor ISY1 [KO:K12870]
CC1G_01054  peptidyl-prolyl cis-trans isomerase-like 1 [KO:K12733] [EC:5.2.1.8]
CC1G_01390  hypothetical protein [KO:K09564] [EC:5.2.1.8]
CC1G_01154  hypothetical protein [KO:K12871]
CC1G_01164  pre-mRNA-splicing factor SLT11 [KO:K12872]
CC1G_08861  maternal g10 transcript [KO:K12873]
CC1G_00176  ATP-dependent RNA helicase FAL1 [KO:K13025] [EC:5.6.2.7]
CC1G_08323  RNP containing family member [KO:K12876]
CC1G_02683  mago nashi domain-containing protein [KO:K12877]
CC1G_14673  tho2 protein [KO:K12879]
CC1G_02454  hypothetical protein [KO:K12881]
CC1G_07727  RNA annealing factor [KO:K12881]
CC1G_03581  hypothetical protein [KO:K12881]
CC1G_09967  cap binding protein 80-PB [KO:K12882]
CC1G_03878  cap-binding protein CPB20 [KO:K12883]
CC1G_14536  hypothetical protein [KO:K12891]
CC1G_01109  hypothetical protein [KO:K12893]
CC1G_13772  hypothetical protein [KO:K12897]
CC1G_08212  transformer-2-beta isoform 3 [KO:K12897]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
KO pathway
ko03040   
LinkDB

DBGET integrated database retrieval system