KEGG   PATHWAY: pcub03040
Entry
pcub03040                   Pathway                                
Name
Spliceosome - Psilocybe cubensis (magic mushroom)
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
pcub03040  Spliceosome
pcub03040

Other DBs
GO: 0005681
Organism
Psilocybe cubensis (magic mushroom) [GN:pcub]
Gene
JR316_0004490  Pre-mRNA-processing ATP-dependent RNA helicase PRP5 [KO:K12811] [EC:5.6.2.7]
JR316_0006873  Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 [KO:K12813] [EC:5.6.2.6]
JR316_0001254  Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [KO:K12815] [EC:5.6.2.6]
JR316_0001113  Pre-mRNA-processing factor 17 [KO:K12816]
JR316_0006067  Pre-mRNA-splicing factor 18 [KO:K12817]
JR316_0000371  ATP-dependent RNA helicase DHX8 [KO:K12818] [EC:5.6.2.6]
JR316_0002069  mRNA splicing protein [KO:K12819]
JR316_0012623  DEAH-box ATP-dependent RNA helicase prp43 [KO:K12820] [EC:5.6.2.6]
JR316_0008218  Small nuclear ribonucleoprotein-associated protein B [KO:K11086]
JR316_0009260  mRNA splicing protein smd1 [KO:K11087]
JR316_0000834  mRNA splicing protein [KO:K11096]
JR316_0002338  Small nuclear ribonucleoprotein Sm D3 [KO:K11088]
JR316_0000725  putative small nuclear ribonucleoprotein E [KO:K11097]
JR316_0004722  Small nuclear ribonucleoprotein F [KO:K11098]
JR316_0006063  U1 small nuclear ribonucleoprotein 70 kDa-like protein [KO:K11093]
JR316_0006051  ATP-dependent RNA helicase dbp2 [KO:K12823] [EC:5.6.2.7]
JR316_0004726  Transcription elongation regulator 1 [KO:K12824]
JR316_0001140  U2 small nuclear ribonucleoprotein A' [KO:K11092]
JR316_0003558  U2 small nuclear ribonucleoprotein B'' [KO:K11094]
JR316_0003228  Splicing factor 3A subunit 1 [KO:K12825]
JR316_0000631  Splicing factor 3A subunit 2 [KO:K12826]
JR316_0008151  U2 snRNP component prp10 [KO:K12828]
JR316_0004031  Splicing factor 3B subunit 2 [KO:K12829]
JR316_0001658  pre-mRNA-splicing factor rse1 [KO:K12830]
JR316_0003542  Splicing factor 3B subunit 4 [KO:K12831]
JR316_0004872  Splicing factor 3B subunit 6-like protein [KO:K12833]
JR316_0008068  PHD finger-like domain-containing protein 5A [KO:K12834]
JR316_0002345  Splicing factor U2AF 23 kDa subunit [KO:K12836]
JR316_0008170  Splicing factor U2AF 65 kDa subunit [KO:K12837]
JR316_0000931  Survival of motor neuron-related-splicing factor 30 [KO:K12839]
JR316_0002090  Protein RRC1-like [KO:K12842]
JR316_0001930  U6 snRNA-associated Sm-like protein LSm2 [KO:K12621]
JR316_0004676  Sm-like protein lsm3b [KO:K12622]
JR316_0002631  RNA processing protein [KO:K12623]
JR316_0001099  RNA-binding protein lsm5 [KO:K12624]
JR316_0009964  U4/U6-U5 snRNP complex subunit lsm6 [KO:K12625]
JR316_0010869  U6 snRNA-associated Sm-like protein LSm7 [KO:K12626]
JR316_0008901  U6 snRNA-associated Sm-like protein LSm8 [KO:K12627]
JR316_0009927  U4/U5/U6 small nuclear ribonucleoprotein prp3 [KO:K12843]
JR316_0007970  U4/U6 small nuclear ribonucleoprotein Prp4 [KO:K12662]
JR316_0012150  Peptidyl-prolyl cis-trans isomerase H [KO:K09567] [EC:5.2.1.8]
JR316_0004946  U4/U6 small nuclear ribonucleoprotein Prp31 [KO:K12844]
JR316_0003941  RNA binding protein snu13 [KO:K12845]
JR316_0000417  putative mRNA-splicing protein ubp10 [KO:K12847]
JR316_0006267  U4/U6.U5 tri-snRNP-associated protein 1 [KO:K11984]
JR316_0002013  Zinc finger matrin-type protein 2 [KO:K12848]
JR316_0003675  Pre-mRNA-splicing factor 38A [KO:K12849]
JR316_0000499  116 kDa U5 small nuclear ribonucleoprotein component [KO:K12852]
JR316_0009525  U5 small nuclear ribonucleoprotein 200 kDa helicase [KO:K12854] [EC:5.6.2.6]
JR316_0007564  Pre-mRNA-splicing factor prp1 [KO:K12855]
JR316_0007104  Pre-mRNA-processing-splicing factor 8 [KO:K12856]
JR316_0004346  U5 small nuclear ribonucleoprotein 40 kDa protein [KO:K12857]
JR316_0003703  Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [KO:K12858] [EC:5.6.2.7]
JR316_0012156  Thioredoxin-like 4A [KO:K12859]
JR316_0001116  Pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
JR316_0003288  Pre-mRNA-splicing factor CEF1 [KO:K12860]
JR316_0012422  pre-mRNA-splicing factor prp46 [KO:K12862]
JR316_0002520  Pre-mRNA-splicing factor cwc15 [KO:K12863]
JR316_0004795  Beta-catenin-like protein 1 [KO:K12864]
JR316_0003523  Heat shock protein sks2 [KO:K03283]
JR316_0003820  Homospermidine synthase 1 [KO:K03283]
JR316_0003445  mRNA splicing protein [KO:K06063]
JR316_0003646  Pre-mRNA-splicing factor SYF1 [KO:K12867]
JR316_0013157  Pre-mRNA-splicing factor syf2 [KO:K12868]
JR316_0009050  NineTeen Complex (NTC) component [KO:K12869]
JR316_0012956  Pre-mRNA-splicing factor ISY1 [KO:K12870]
JR316_0003924  heme binding [KO:K12733] [EC:5.2.1.8]
JR316_0003366  Coiled-coil domain-containing protein 12 [KO:K12871]
JR316_0003591  Pre-mRNA-splicing factor SLT11 [KO:K12872]
JR316_0004873  RNA helicase [KO:K13025] [EC:5.6.2.7]
JR316_0012472  Protein mago nashi-like protein [KO:K12877]
JR316_0008842  mRNA export protein mlo3 [KO:K12881]
JR316_0003458  Nuclear cap-binding protein subunit 2 [KO:K12883]
JR316_0003437  Pre-mRNA-splicing factor srp2 [KO:K12893]
JR316_0000234  Serine/arginine-rich splicing factor SR45a [KO:K12897]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
KO pathway
ko03040   
LinkDB

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