KEGG   PATHWAY: pvir03082
Entry
pvir03082                   Pathway                                
Name
ATP-dependent chromatin remodeling - Panicum virgatum (switchgrass)
Class
Genetic Information Processing; Chromosome
Pathway map
pvir03082  ATP-dependent chromatin remodeling
pvir03082

Organism
Panicum virgatum (switchgrass) [GN:pvir]
Gene
120673603  probable chromatin-remodeling complex ATPase chain [KO:K11654] [EC:5.6.2.-]
120675959  probable chromatin-remodeling complex ATPase chain [KO:K11654] [EC:5.6.2.-]
120706913  probable chromatin-remodeling complex ATPase chain [KO:K11654] [EC:5.6.2.-]
120706916  probable chromatin-remodeling complex ATPase chain isoform X1 [KO:K11654] [EC:5.6.2.-]
120671488  DNA polymerase epsilon subunit 3-like isoform X1 [KO:K02326] [EC:2.7.7.7]
120660005  DNA polymerase epsilon subunit 3-like [KO:K02326] [EC:2.7.7.7]
120685673  WD-40 repeat-containing protein MSI3-like [KO:K10752]
120658193  WD-40 repeat-containing protein MSI3-like [KO:K10752]
120675337  WD-40 repeat-containing protein MSI4-like [KO:K10752]
120690655  histone-binding protein MSI1 homolog [KO:K10752]
120707803  WD-40 repeat-containing protein MSI4-like [KO:K10752]
120650272  histone-binding protein MSI1 homolog [KO:K10752]
120671351  CHD3-type chromatin-remodeling factor PICKLE-like isoform X1 [KO:K11643] [EC:5.6.2.-]
120702828  CHD3-type chromatin-remodeling factor PICKLE-like [KO:K11643] [EC:5.6.2.-]
120708871  CHD3-type chromatin-remodeling factor PICKLE-like isoform X1 [KO:K11643] [EC:5.6.2.-]
120655088  probable histone deacetylase 19 isoform X1 [KO:K06067] [EC:3.5.1.98]
120700078  probable histone deacetylase 19 [KO:K06067] [EC:3.5.1.98]
120640892  histone deacetylase 9 isoform X1 [KO:K06067] [EC:3.5.1.98]
120670916  histone deacetylase 1-like isoform X1 [KO:K06067] [EC:3.5.1.98]
120703765  histone deacetylase 1 [KO:K06067] [EC:3.5.1.98]
120674808  histone deacetylase 19-like [KO:K06067] [EC:3.5.1.98]
120690724  probable histone deacetylase 19 [KO:K06067] [EC:3.5.1.98]
120678377  histone deacetylase 6-like [KO:K06067] [EC:3.5.1.98]
120681991  histone deacetylase 9-like isoform X1 [KO:K06067] [EC:3.5.1.98]
120712108  histone deacetylase 6-like [KO:K06067] [EC:3.5.1.98]
120695744  ATP-dependent helicase BRM-like isoform X1 [KO:K11647] [EC:5.6.2.-]
120654407  ATP-dependent helicase BRM-like isoform X1 [KO:K11647] [EC:5.6.2.-]
120664202  chromatin structure-remodeling complex protein BSH-like [KO:K11648]
120697386  chromatin structure-remodeling complex protein BSH-like [KO:K11648]
120654949  SWI/SNF complex subunit SWI3B-like isoform X1 [KO:K11649]
120685249  SWI/SNF complex subunit SWI3C-like isoform X1 [KO:K11649]
120641261  SWI/SNF complex subunit SWI3A-like [KO:K11649]
120688240  SWI/SNF complex subunit SWI3D-like isoform X1 [KO:K11649]
120643843  SWI/SNF complex subunit SWI3C-like [KO:K11649]
120663729  SWI/SNF complex subunit SWI3C-like [KO:K11649]
120649937  SWI/SNF complex subunit SWI3D-like isoform X1 [KO:K11649]
120696856  SWI/SNF complex subunit SWI3C-like [KO:K11649]
120682062  SWI/SNF complex subunit SWI3D-like [KO:K11649]
120683027  SWI/SNF complex subunit SWI3A-like [KO:K11649]
120639598  SWI/SNF complex subunit SWI3D-like isoform X1 [KO:K11649]
120656872  SWI/SNF complex component SNF12 homolog [KO:K11650]
120713356  SWI/SNF complex component SNF12 homolog [KO:K11650]
120713877  SWI/SNF complex component SNF12 homolog [KO:K11650]
120687737  actin-related protein 4 [KO:K11340]
120647599  actin-related protein 4-like [KO:K11340]
120688304  bromodomain-containing protein DDB_G0270170-like isoform X1 [KO:K22184]
120658315  bromodomain-containing protein DDB_G0270170-like [KO:K22184]
120689297  uncharacterized protein LOC120689297 [KO:K22184]
120661480  uncharacterized protein LOC120661480 [KO:K22184]
120647426  bromodomain-containing protein DDB_G0270170-like [KO:K22184]
120652470  uncharacterized protein LOC120652470 [KO:K22184]
120692135  chromatin-remodeling ATPase INO80-like [KO:K11665] [EC:5.6.2.-]
120652346  chromatin-remodeling ATPase INO80-like [KO:K11665] [EC:5.6.2.-]
120644871  chromatin-remodeling complex subunit ies6-like isoform X1 [KO:K11667]
120668441  INO80 complex subunit C-like isoform X1 [KO:K11667]
120664087  uncharacterized protein LOC120664087 [KO:K11671]
120697292  uncharacterized protein LOC120697292 [KO:K11671]
120657664  ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 [KO:K05610] [EC:3.4.19.12]
120678707  ubiquitin carboxyl-terminal hydrolase 2-like [KO:K05610] [EC:3.4.19.12]
120709263  ubiquitin carboxyl-terminal hydrolase 2-like [KO:K05610] [EC:3.4.19.12]
120650361  ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 [KO:K05610] [EC:3.4.19.12]
120713118  ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 [KO:K05610] [EC:3.4.19.12]
120672270  ruvB-like protein 1 [KO:K04499] [EC:5.6.2.4]
120708587  ruvB-like protein 1 [KO:K04499] [EC:5.6.2.4]
120660901  ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
120661788  ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
120692775  ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
120673572  actin-related protein 5-like [KO:K11672]
120706010  actin-related protein 5-like [KO:K11672]
120639682  actin-related protein 9-like isoform X1 [KO:K11673]
120683762  actin-related protein 9 isoform X1 [KO:K11673]
120656854  protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1-like isoform X1 [KO:K11661] [EC:5.6.2.-]
120713039  protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1-like isoform X1 [KO:K11661] [EC:5.6.2.-]
120664784  SWR1-complex protein 4-like isoform X1 [KO:K11324]
120697982  SWR1-complex protein 4-like isoform X1 [KO:K11324]
120670837  transcription initiation factor TFIID subunit 14b-like [KO:K11341]
120702529  transcription initiation factor TFIID subunit 14b-like isoform X1 [KO:K11341]
120711075  SWR1 complex subunit 2 isoform X1 [KO:K11664]
120685395  histone H2A-like [KO:K11251]
120699646  probable histone H2AXb [KO:K11251]
120686367  probable histone H2A variant 3 [KO:K11251]
120644777  probable histone H2A variant 3 [KO:K11251]
120690148  probable histone H2A variant 3 [KO:K11251]
120690151  probable histone H2A variant 3 [KO:K11251]
120690564  probable histone H2A.2 [KO:K11251]
120690589  probable histone H2A.1 [KO:K11251]
120690684  probable histone H2AXa [KO:K11251]
120647221  probable histone H2A variant 1 [KO:K11251]
120661360  histone H2A-like [KO:K11251]
120661363  histone H2A-like [KO:K11251]
120661592  probable histone H2A.2 [KO:K11251]
120661595  probable histone H2A.1 [KO:K11251]
120692361  histone H2A [KO:K11251]
120664036  probable histone H2A.6 [KO:K11251]
120649806  probable histone H2A variant 3 [KO:K11251]
120649807  probable histone H2A variant 3 [KO:K11251]
120649940  probable histone H2AXa [KO:K11251]
120665231  probable histone H2A.4 [KO:K11251]
120666362  probable histone H2AXb [KO:K11251]
120697234  probable histone H2A.6 [KO:K11251]
120652802  histone H2A-like [KO:K11251]
120698430  probable histone H2A.4 [KO:K11251]
120675761  actin-related protein 6-like [KO:K11662]
120706490  actin-related protein 6 [KO:K11662]
120642662  SWR1 complex subunit 6-like [KO:K11663]
120689380  SWR1 complex subunit 6-like [KO:K11663]
120647178  SWR1 complex subunit 6-like [KO:K11663]
120662012  transformation/transcription domain-associated protein-like [KO:K08874]
120694680  transformation/transcription domain-associated protein-like [KO:K08874]
120698418  protein MRG1-like isoform X1 [KO:K11339]
120655453  protein MRG1-like isoform X1 [KO:K11339]
120673923  uncharacterized protein LOC120673923 [KO:K11322]
120660241  uncharacterized protein LOC120660241 [KO:K11322]
120656960  chromatin modification-related protein MEAF6-like [KO:K11344]
120649600  chromatin modification-related protein MEAF6-like [KO:K11344]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   
LinkDB

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