KEGG   PATHWAY: sdu00310
Entry
sdu00310                    Pathway                                
Name
Lysine degradation - Seriola dumerili (greater amberjack)
Class
Metabolism; Amino acid metabolism
Pathway map
sdu00310  Lysine degradation
sdu00310

Module
sdu_M00032  Lysine degradation, lysine => saccharopine => acetoacetyl-CoA [PATH:sdu00310]
Other DBs
GO: 0006554
Organism
Seriola dumerili (greater amberjack) [GN:sdu]
Gene
111235992  aass; alpha-aminoadipic semialdehyde synthase, mitochondrial [KO:K14157] [EC:1.5.1.8 1.5.1.9]
111217230  aldh7a1; alpha-aminoadipic semialdehyde dehydrogenase [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
111235631  aadat; kynurenine/alpha-aminoadipate aminotransferase, mitochondrial [KO:K00825] [EC:2.6.1.7 2.6.1.39]
111229832  dhtkd1; probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial [KO:K15791] [EC:1.2.4.-]
111226192  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
111239421  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
111236031  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
111223692  gcdh; glutaryl-CoA dehydrogenase, mitochondrial [KO:K00252] [EC:1.3.8.6]
111229293  glutaryl-CoA dehydrogenase, mitochondrial-like isoform X1 [KO:K00252] [EC:1.3.8.6]
111225708  hadha; trifunctional enzyme subunit alpha, mitochondrial [KO:K07515] [EC:4.2.1.17 1.1.1.211]
111218377  ehhadh; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
111235312  echs1; enoyl-CoA hydratase, mitochondrial [KO:K07511] [EC:4.2.1.17]
111236647  hadh; hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [KO:K00022] [EC:1.1.1.35]
111222223  acat1; acetyl-CoA acetyltransferase, mitochondrial [KO:K00626] [EC:2.3.1.9]
111216395  acat2; acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
111221693  hydroxylysine kinase-like [KO:K18201] [EC:2.7.1.81]
111221554  hydroxylysine kinase-like [KO:K18201] [EC:2.7.1.81]
111226427  phykpl; 5-phosphohydroxy-L-lysine phospho-lyase [KO:K18202] [EC:4.2.3.134]
111234785  pipox; peroxisomal sarcosine oxidase isoform X1 [KO:K00306] [EC:1.5.3.1 1.5.3.7]
111235243  camkmt; calmodulin-lysine N-methyltransferase [KO:K18826] [EC:2.1.1.60]
111228034  kmt2a; histone-lysine N-methyltransferase 2A [KO:K09186] [EC:2.1.1.354]
111219023  kmt2d; LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2D [KO:K09187] [EC:2.1.1.354]
111236883  histone-lysine N-methyltransferase 2C-like [KO:K09188] [EC:2.1.1.354]
111238975  histone-lysine N-methyltransferase 2C-like [KO:K09188] [EC:2.1.1.354]
111223127  histone-lysine N-methyltransferase 2B-like [KO:K14959] [EC:2.1.1.354]
111234049  kmt2b; histone-lysine N-methyltransferase 2B [KO:K14959] [EC:2.1.1.354]
111224728  kmt2e; histone-lysine N-methyltransferase 2E isoform X1 [KO:K09189] [EC:2.1.1.354]
111217531  setd1a; histone-lysine N-methyltransferase SETD1A isoform X1 [KO:K11422] [EC:2.1.1.354]
111234229  setd1b; histone-lysine N-methyltransferase SETD1B [KO:K11422] [EC:2.1.1.354]
111230382  setd7; histone-lysine N-methyltransferase SETD7 [KO:K11431] [EC:2.1.1.364]
111219884  histone-lysine N-methyltransferase PRDM9-like [KO:K20796] [EC:2.1.1.354]
111223036  histone-lysine N-methyltransferase ASH1L-like isoform X1 [KO:K06101] [EC:2.1.1.354]
111230135  ash1l; histone-lysine N-methyltransferase ASH1L isoform X1 [KO:K06101] [EC:2.1.1.354]
111221090  smyd3; histone-lysine N-methyltransferase SMYD3 [KO:K11426] [EC:2.1.1.354 2.1.1.357]
111237223  N-lysine methyltransferase SMYD2-like [KO:K11426] [EC:2.1.1.354 2.1.1.357]
111230844  histone-lysine N-methyltransferase SMYD1-like isoform X1 [KO:K11426] [EC:2.1.1.354 2.1.1.357]
111221213  histone-lysine N-methyltransferase SMYD1-like [KO:K11426] [EC:2.1.1.354 2.1.1.357]
111221910  N-lysine methyltransferase SMYD2-A-like [KO:K11426] [EC:2.1.1.354 2.1.1.357]
111219081  suv39h1; histone-lysine N-methyltransferase SUV39H1 [KO:K11419] [EC:2.1.1.355]
111227770  histone-lysine N-methyltransferase EHMT1-like isoform X1 [KO:K11420] [EC:2.1.1.355]
111221113  histone-lysine N-methyltransferase EHMT1-like [KO:K11420] [EC:2.1.1.355]
111223051  ehmt2; histone-lysine N-methyltransferase EHMT2 isoform X1 [KO:K11420] [EC:2.1.1.355]
111230127  setdb1; histone-lysine N-methyltransferase SETDB1 isoform X1 [KO:K11421] [EC:2.1.1.366]
111235520  histone-lysine N-methyltransferase SETDB2-like [KO:K18494] [EC:2.1.1.355]
111219130  PR domain zinc finger protein 2-like [KO:K11432] [EC:2.1.1.355]
111223982  prdm2; PR domain zinc finger protein 2 [KO:K11432] [EC:2.1.1.355]
111217595  ezh1; histone-lysine N-methyltransferase EZH1 [KO:K17451] [EC:2.1.1.356]
111238320  ezh2; histone-lysine N-methyltransferase EZH2 [KO:K11430] [EC:2.1.1.356]
111221954  histone-lysine N-methyltransferase SETMAR [KO:K11433] [EC:2.1.1.357]
111234523  histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like [KO:K15588] [EC:2.1.1.357]
111226751  histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like [KO:K15588] [EC:2.1.1.357]
111225656  nsd2; histone-lysine N-methyltransferase NSD2 [KO:K11424] [EC:2.1.1.357]
111237743  nsd3; histone-lysine N-methyltransferase NSD3 [KO:K11425] [EC:2.1.1.370 2.1.1.371]
111236791  setd2; histone-lysine N-methyltransferase SETD2 [KO:K11423] [EC:2.1.1.359]
111232114  dot1l; histone-lysine N-methyltransferase, H3 lysine-79 specific isoform X1 [KO:K11427] [EC:2.1.1.360]
111217857  kmt5a; N-lysine methyltransferase KMT5A [KO:K11428] [EC:2.1.1.361]
111230938  N-lysine methyltransferase KMT5A-A-like [KO:K11428] [EC:2.1.1.361]
111239241  prdm6; putative histone-lysine N-methyltransferase PRDM6 [KO:K20795] [EC:2.1.1.361]
111217719  histone-lysine N-methyltransferase KMT5B-B-like [KO:K11429] [EC:2.1.1.362]
111224033  kmt5b; histone-lysine N-methyltransferase KMT5B [KO:K11429] [EC:2.1.1.362]
111224094  mecom; MDS1 and EVI1 complex locus protein EVI1 isoform X1 [KO:K04462] [EC:2.1.1.367]
111219051  prdm16; PR domain zinc finger protein 16 [KO:K22410] [EC:2.1.1.367]
111222374  tmlhe; trimethyllysine dioxygenase, mitochondrial [KO:K00474] [EC:1.14.11.8]
111217232  fatty aldehyde dehydrogenase-like [KO:K00128] [EC:1.2.1.3]
111223768  aldh16a1; aldehyde dehydrogenase family 16 member A1 [KO:K00128] [EC:1.2.1.3]
111225913  aldh2; aldehyde dehydrogenase, mitochondrial [KO:K00128] [EC:1.2.1.3]
111226283  fatty aldehyde dehydrogenase-like [KO:K00128] [EC:1.2.1.3]
111226286  aldehyde dehydrogenase, dimeric NADP-preferring-like isoform X1 [KO:K00128] [EC:1.2.1.3]
111228945  aldehyde dehydrogenase family 9 member A1-B-like isoform X1 [KO:K00149] [EC:1.2.1.47 1.2.1.3]
111231960  aldehyde dehydrogenase family 9 member A1 [KO:K00149] [EC:1.2.1.47 1.2.1.3]
111223802  bbox1; gamma-butyrobetaine dioxygenase [KO:K00471] [EC:1.14.11.1]
111233777  plod1; procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 isoform X1 [KO:K00473] [EC:1.14.11.4]
111237911  plod2; procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1 [KO:K13645] [EC:1.14.11.4]
111239991  procollagen-lysine,2-oxoglutarate 5-dioxygenase 3-like [KO:K13646] [EC:1.14.11.4 2.4.1.50 2.4.1.66]
111238760  procollagen galactosyltransferase 2-like [KO:K11703] [EC:2.4.1.50]
111229034  procollagen galactosyltransferase 2-like [KO:K11703] [EC:2.4.1.50]
111229282  procollagen galactosyltransferase 1-like [KO:K11703] [EC:2.4.1.50]
111232220  procollagen galactosyltransferase 2-like [KO:K11703] [EC:2.4.1.50]
111227055  procollagen galactosyltransferase 1-like [KO:K11703] [EC:2.4.1.50]
Compound
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00037  Glycine
C00042  Succinate
C00047  L-Lysine
C00068  Thiamin diphosphate
C00136  Butanoyl-CoA
C00164  Acetoacetate
C00322  2-Oxoadipate
C00332  Acetoacetyl-CoA
C00408  L-Pipecolate
C00431  5-Aminopentanoate
C00449  N6-(L-1,3-Dicarboxypropyl)-L-lysine
C00450  (S)-2,3,4,5-Tetrahydropyridine-2-carboxylate
C00487  Carnitine
C00489  Glutarate
C00527  Glutaryl-CoA
C00739  D-Lysine
C00877  Crotonoyl-CoA
C00956  L-2-Aminoadipate
C00990  5-Aminopentanamide
C01087  (R)-2-Hydroxyglutarate
C01142  (3S)-3,6-Diaminohexanoate
C01144  (S)-3-Hydroxybutanoyl-CoA
C01149  4-Trimethylammoniobutanal
C01181  4-Trimethylammoniobutanoate
C01186  (3S,5S)-3,5-Diaminohexanoate
C01211  Procollagen 5-hydroxy-L-lysine
C01259  (3S)-3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
C01672  Cadaverine
C02188  Protein lysine
C02727  N6-Acetyl-L-lysine
C03087  5-Acetamidopentanoate
C03196  (S)-2-Hydroxyglutarate
C03239  6-Amino-2-oxohexanoate
C03273  5-Oxopentanoate
C03366  5-Phosphooxy-L-lysine
C03656  (S)-5-Amino-3-oxohexanoic acid
C03793  N6,N6,N6-Trimethyl-L-lysine
C04020  D-Lysopine
C04076  L-2-Aminoadipate 6-semialdehyde
C04092  Delta1-Piperideine-2-carboxylate
C04487  5-(D-Galactosyloxy)-L-lysine-procollagen
C05161  (2R,5S)-2,5-Diaminohexanoate
C05231  L-3-Aminobutyryl-CoA
C05544  Protein N6-methyl-L-lysine
C05545  Protein N6,N6-dimethyl-L-lysine
C05546  Protein N6,N6,N6-trimethyl-L-lysine
C05548  6-Acetamido-2-oxohexanoate
C05825  2-Amino-5-oxohexanoate
C06157  [Dihydrolipoyllysine-residue succinyltransferase] S-glutaryldihydrolipoyllysine
C12455  5-Aminopentanal
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16741  L-Hydroxylysine
C22667  4-Carboxy-1-hydroxybutyryl-ThPP
Reference
PMID:11802770
  Authors
Vaz FM, Wanders RJ.
  Title
Carnitine biosynthesis in mammals.
  Journal
Biochem J 361:417-29 (2002)
DOI:10.1042/bj3610417
Reference
PMID:1682209
  Authors
Large PJ, Robertson A.
  Title
The route of lysine breakdown in Candida tropicalis.
  Journal
FEMS Microbiol Lett 66:209-13 (1991)
DOI:10.1111/j.1574-6968.1990.tb03998.x
Related
pathway
sdu00020  Citrate cycle (TCA cycle)
sdu00780  Biotin metabolism
KO pathway
ko00310   
LinkDB

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