KEGG   PATHWAY: pdic04622
Entry
pdic04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Phyllostomus discolor (pale spear-nosed bat)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
pdic04622  RIG-I-like receptor signaling pathway
pdic04622

Organism
Phyllostomus discolor (pale spear-nosed bat) [GN:pdic]
Gene
114511471  DDX58; antiviral innate immune response receptor RIG-I [KO:K12646] [EC:5.6.2.6]
114495299  IFIH1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
114506732  ZNFX1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
114507072  MAVS; mitochondrial antiviral-signaling protein [KO:K12648]
114503142  DHX58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
114492329  TRAF3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
114494274  TANK; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
114501519  AZI2; 5-azacytidine-induced protein 2 isoform X2 [KO:K12651]
114504200  TBKBP1; TANK-binding kinase 1-binding protein 1 isoform X3 [KO:K12652]
114504586  IKBKG; NF-kappa-B essential modulator isoform X1 [KO:K07210]
114513223  TBK1; LOW QUALITY PROTEIN: serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
114512155  IKBKE; LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
114511489  IRF3; interferon regulatory factor 3 [KO:K05411]
114499187  IRF7; interferon regulatory factor 7 [KO:K09447]
114502765  interferon alpha-4-like [KO:K05414]
114502773  interferon alpha-4-like [KO:K05414]
114503306  interferon alpha-4-like [KO:K05414]
114490854  interferon alpha-4-like [KO:K05414]
114490401  interferon alpha-4-like [KO:K05414]
114512515  IFNB1; interferon beta [KO:K05415]
114490402  interferon omega-2-like [KO:K05440]
114511668  interferon omega-2-like [KO:K05440]
114507612  interferon omega-2-like [KO:K05440]
114508694  interferon omega-2-like [KO:K05440]
114509253  interferon omega-2-like [KO:K05440]
114491882  IFNE; LOW QUALITY PROTEIN: interferon epsilon [KO:K05442]
114508085  IFNK; interferon kappa [KO:K05441]
114488446  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein isoform X1 [KO:K03171]
114489990  FADD; FAS-associated death domain protein [KO:K02373]
114497608  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
114494575  CASP8; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
114494329  CASP10; caspase-10 isoform X2 [KO:K04400] [EC:3.4.22.63]
114496345  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
114508493  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
114511645  NFKBIB; NF-kappa-B inhibitor beta [KO:K02581]
114492937  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
114492465  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X3 [KO:K02580]
114499888  RELA; transcription factor p65 [KO:K04735]
114504307  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
114493958  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
114500758  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
114512339  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
114509631  MAPK9; mitogen-activated protein kinase 9 isoform X2 [KO:K04440] [EC:2.7.11.24]
114496029  MAPK8; mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
114492422  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
114513098  MAPK12; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
114513304  MAPK11; mitogen-activated protein kinase 11 isoform X2 [KO:K04441] [EC:2.7.11.24]
114493876  MAPK14; mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
114493878  MAPK13; mitogen-activated protein kinase 13 isoform X2 [KO:K04441] [EC:2.7.11.24]
118499766  C-X-C motif chemokine 15-like isoform X1 [KO:K10030]
114493304  CXCL8; interleukin-8 [KO:K10030]
114495334  TNF; tumor necrosis factor isoform X1 [KO:K03156]
114491057  IL12A; interleukin-12 subunit alpha [KO:K05406]
114510060  IL12B; interleukin-12 subunit beta [KO:K05425]
118499832  CXCL10; C-X-C motif chemokine 10 isoform X1 [KO:K12671]
114496089  LOW QUALITY PROTEIN: C-X-C motif chemokine 10 [KO:K12671]
114488810  ADAR; double-stranded RNA-specific adenosine deaminase isoform X3 [KO:K12968] [EC:3.5.4.37]
114502762  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
114488139  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
114506788  RNF125; E3 ubiquitin-protein ligase RNF125 [KO:K12170] [EC:2.3.2.27]
114496818  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
114494439  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
114507089  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
114499310  NLRX1; NLR family member X1 [KO:K12653]
114509793  STING1; stimulator of interferon genes protein isoform X1 [KO:K12654]
114504549  OTUD5; OTU domain-containing protein 5 isoform X2 [KO:K12655] [EC:3.4.19.12]
114489033  SIKE1; suppressor of IKBKE 1 [KO:K12656]
114489890  ATP-dependent RNA helicase DDX3X-like [KO:K11594] [EC:5.6.2.7]
114504628  DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
114503431  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
114500274  TKFC; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
pdic04010  MAPK signaling pathway
pdic04120  Ubiquitin mediated proteolysis
pdic04210  Apoptosis
pdic04630  JAK-STAT signaling pathway
KO pathway
ko04622   
LinkDB

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