KEGG   PATHWAY: ciz04120
Entry
ciz04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Carettochelys insculpta (pitted-shelled turtle)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ciz04120  Ubiquitin mediated proteolysis
ciz04120

Other DBs
GO: 0016567
Organism
Carettochelys insculpta (pitted-shelled turtle) [GN:ciz]
Gene
142000933  [KO:K10099]
142000974  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
142001009  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
142001080  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
142001512  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
142001571  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
142002186  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
142002256  UBA52; ubiquitin-ribosomal protein eL40 fusion protein [KO:K02927]
142002393  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
142002395  FZR1; fizzy-related protein homolog [KO:K03364]
142002576  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
142002612  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
142002888  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
142003252  KEAP1; kelch-like ECH-associated protein 1 isoform X1 [KO:K10456]
142003494  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
142003563  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K04707] [EC:2.3.2.27]
142003639  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
142004181  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
142007890  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
142007962  [KO:K16060]
142008045  CUL5; cullin-5 [KO:K10612]
142008091  CUL2; cullin-2 [KO:K03870]
142008115  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
142008526  ELOC; elongin-C [KO:K03872]
142008651  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
142008702  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 isoform X1 [KO:K10582] [EC:2.3.2.23]
142008819  UBE2E2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
142009178  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
142009240  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
142009273  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
142009676  CUL1; cullin-1 [KO:K03347]
142010222  RPS27A; ubiquitin-ribosomal protein eS31 fusion protein [KO:K02977]
142010366  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
142010493  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
142010786  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
142010901  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
142010986  BIRC6; LOW QUALITY PROTEIN: dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 [KO:K10586] [EC:2.3.2.23]
142011359  CUL4A; cullin-4A isoform X1 [KO:K10609]
142011455  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
142012129  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
142012164  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
142012274  [KO:K07868]
142012316  UBOX5; RING finger protein 37 isoform X1 [KO:K10600] [EC:2.3.2.27]
142012428  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
142012455  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
142012492  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
142012610  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
142012637  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
142012755  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
142012794  HERC3; putative E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
142012857  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
142012886  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
142013187  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
142013755  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
142013784  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
142013809  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
142013838  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
142013868  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
142013879  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
142014018  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
142014093  ELOB; elongin-B [KO:K03873]
142014562  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
142014630  TRAF6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
142014838  DDB1; DNA damage-binding protein 1 [KO:K10610]
142014879  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04552] [EC:2.3.2.23]
142015463  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
142015618  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
142016062  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
142016074  HERC4; putative E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
142016109  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
142016119  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
142016687  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
142016880  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
142017793  CDC20; cell division cycle protein 20 homolog [KO:K03363]
142017849  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
142017904  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
142018417  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
142018423  CUL3; cullin-3 [KO:K03869]
142018529  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
142018564  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
142018620  AIRE; autoimmune regulator [KO:K10603]
142018713  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
142018937  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
142019114  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
142019151  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
142019312  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K03178] [EC:6.2.1.45]
142019472  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
142019619  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
142019667  [KO:K10054] [EC:2.3.2.-]
142019707  [KO:K10054] [EC:2.3.2.-]
142019800  DET1; DET1 homolog [KO:K10571]
142019920  HERC1; putative E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
142019921  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
142019971  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
142020012  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
142020183  CUL4B; cullin-4B [KO:K10609]
142020407  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
142020535  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
142020693  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
142020828  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
142020952  [KO:K10260]
142020978  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
142021064  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
142021203  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
142021255  CDC23; cell division cycle protein 23 homolog [KO:K03355]
142021378  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
142021411  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
142021456  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
142021519  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
142021550  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
142021669  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
142021796  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
142022037  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
142022225  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
142022235  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
142022367  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
142022436  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
142022504  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
142022659  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
142022695  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
142022743  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
142022845  UBC; polyubiquitin-C [KO:K08770]
142022847  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
142022873  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
142022930  UBB; polyubiquitin-B [KO:K08770]
142023001  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
142023304  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
142023461  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
142023511  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
142023518  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
142023525  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
142023771  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
142023886  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
142024075  [KO:K10447]
142024094  ANAPC2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
142024238  [KO:K04696]
142024426  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
142024468  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
142024553  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
142025021  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
142025029  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
142025241  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ciz03050  Proteasome
KO pathway
ko04120   

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