KEGG   PATHWAY: hsp04622
Entry
hsp04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Hippoglossus stenolepis (Pacific halibut)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
hsp04622  RIG-I-like receptor signaling pathway
hsp04622

Organism
Hippoglossus stenolepis (Pacific halibut) [GN:hsp]
Gene
118119917  ifih1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
118104703  znfx1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
118116539  mavs; mitochondrial antiviral-signaling protein [KO:K12648]
118124096  probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
118124097  LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
118124098  LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
118116317  traf3; TNF receptor-associated factor 3 [KO:K03174]
118120426  tank; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
118113992  azi2; 5-azacytidine-induced protein 2 [KO:K12651]
118101133  tbkbp1; LOW QUALITY PROTEIN: TANK-binding kinase 1-binding protein 1 [KO:K12652]
118123865  TANK-binding kinase 1-binding protein 1 isoform X1 [KO:K12652]
118110546  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
118101335  tbk1; serine/threonine-protein kinase TBK1 isoform X2 [KO:K05410] [EC:2.7.11.10]
118104915  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
118100461  irf3; interferon regulatory factor 3 [KO:K05411]
118109310  irf7; interferon regulatory factor 7 [KO:K09447]
118099784  interferon a3-like [KO:K05414]
118100748  interferon a3-like [KO:K05414]
118100772  interferon a3 [KO:K05414]
118100928  interferon a3-like [KO:K05414]
118109955  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
118105702  fadd; protein FADD [KO:K02373]
118117970  ripk1l; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
118117212  caspase-8 [KO:K04398] [EC:3.4.22.61]
118117657  casp8; caspase-8 [KO:K04398] [EC:3.4.22.61]
118120505  caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
118120504  prkra; interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog isoform X1 [KO:K04398] [EC:3.4.22.61]
118100852  inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
118118677  inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
118114623  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
118116236  nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734]
118099823  NF-kappa-B inhibitor alpha [KO:K04734]
118111826  nfkb1; nuclear factor NF-kappa-B p105 subunit [KO:K02580]
118102445  rela; transcription factor p65 isoform X1 [KO:K04735]
118115649  traf2a; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
118098034  TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
118125819  traf2b; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
118099311  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
118116505  mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
118106693  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
118100088  mapk8b; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
118118847  mapk8a; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
118112070  mapk9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
118098029  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
118109156  mapk12a; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
118101535  mapk11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
118101536  mapk12b; mitogen-activated protein kinase 12b [KO:K04441] [EC:2.7.11.24]
118110753  mapk14a; mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
118111319  mapk13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
118111462  zgc:171775; STKc_p38 domain-containing protein isoform X1 [KO:K04441] [EC:2.7.11.24]
118104855  mapk14b; mitogen-activated protein kinase 14B isoform X1 [KO:K04441] [EC:2.7.11.24]
118121600  interleukin-8 [KO:K10030]
118103008  interleukin-8 [KO:K10030]
118106541  il12a; interleukin-12 subunit alpha [KO:K05406]
118117381  interleukin-12 subunit alpha-like [KO:K05406]
118115660  si:dkey-88e18.2; interleukin-12 subunit beta [KO:K05425]
118122246  interleukin-12 subunit beta [KO:K05425]
118112354  il12ba; interleukin 12Ba [KO:K05425]
124852369  C-X-C motif chemokine 10-like [KO:K12671]
118113545  adar; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
118098536  E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
118123101  E3 ubiquitin-protein ligase TRIM39 [KO:K10652] [EC:2.3.2.27]
118102187  zgc:92594; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
118111579  E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
118106519  ftr86; finTRIM family, member 86 isoform X1 [KO:K10652] [EC:2.3.2.27]
118120048  E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
118120028  E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
118102699  si:cabz01101003.1; LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
118102757  cyldb; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
118105395  cylda; ubiquitin carboxyl-terminal hydrolase CYLD isoform X2 [KO:K08601] [EC:3.4.19.12]
118120994  cyldl; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
118113818  atg5; autophagy protein 5 [KO:K08339]
118106105  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
118112807  sting1; stimulator of interferon genes protein [KO:K12654]
118110857  otud5a; OTU domain-containing protein 5-A isoform X1 [KO:K12655] [EC:3.4.19.12]
118111482  sike1; suppressor of IKBKE 1 [KO:K12656]
118103548  ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
118120072  ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 [KO:K11594] [EC:5.6.2.7]
118123903  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
118102401  tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
hsp04010  MAPK signaling pathway
hsp04120  Ubiquitin mediated proteolysis
hsp04210  Apoptosis
KO pathway
ko04622   
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