KEGG   PATHWAY: osa03020
Entry
osa03020                    Pathway                                
Name
RNA polymerase - Oryza sativa japonica (Japanese rice)
Class
Genetic Information Processing; Transcription
Pathway map
osa03020  RNA polymerase
osa03020

Other DBs
GO: 0000428
Organism
Oryza sativa japonica (Japanese rice) [GN:osa]
Gene
3131432  rpoB; RNA polymerase beta subunit [KO:K03043] [EC:2.7.7.6]
3131433  rpoC1; RNA polymerase beta' subunit [KO:K03046] [EC:2.7.7.6]
3131434  rpoC2; RNA polymerase beta'' subunit [KO:K03046] [EC:2.7.7.6]
3131431  rpoA; RNA polymerase alpha subunit [KO:K03040] [EC:2.7.7.6]
4333571  DNA-directed RNA polymerase II subunit RPB2 [KO:K03010] [EC:2.7.7.6]
4337831  DNA-directed RNA polymerase II subunit RPB1 [KO:K03006] [EC:2.7.7.6]
9267835  DNA-directed RNA polymerase II subunit RPB1 [KO:K03006] [EC:2.7.7.6]
136351388  DNA-directed RNA polymerase II subunit RPB1-like [KO:K03006] [EC:2.7.7.6]
4346392  DNA-directed RNA polymerases II, IV and V subunit 3 [KO:K03011]
4342517  DNA-directed RNA polymerases II, IV and V subunit 11 isoform X2 [KO:K03008]
4328083  DNA-directed RNA polymerase II subunit 4 [KO:K03012]
4330570  DNA-directed RNA polymerase II subunit 4 [KO:K03012]
4338726  DNA-directed RNA polymerase II subunit RPB7 [KO:K03015]
4352511  DNA-directed RNA polymerases II, IV and V subunit 9B [KO:K03017]
4331295  DNA-directed RNA polymerases II, IV and V subunit 9B [KO:K03017]
4343902  DNA-directed RNA polymerases II, IV and V subunit 9A isoform X1 [KO:K03017]
4333066  DNA-directed RNA polymerase III subunit 2 [KO:K03021] [EC:2.7.7.6]
4336254  DNA-directed RNA polymerase III subunit 1 [KO:K03018] [EC:2.7.7.6]
4351715  uncharacterized protein [KO:K03020]
4332531  uncharacterized protein isoform X1 [KO:K03027]
4325277  uncharacterized protein isoform X2 [KO:K03023]
4324905  uncharacterized protein isoform X1 [KO:K03026]
9268125  uncharacterized protein [KO:K14721]
4341464  DNA-directed RNA polymerase III subunit RPC6 [KO:K03025]
4343875  uncharacterized protein isoform X2 [KO:K03024]
4343220  DNA-directed RNA polymerase III subunit RPC8 isoform X3 [KO:K03022]
4352240  uncharacterized protein isoform X1 [KO:K25304]
4330285  uncharacterized protein [KO:K03019]
9270457  DNA-directed RNA polymerase I subunit 2 [KO:K03002] [EC:2.7.7.6]
9270399  DNA-directed RNA polymerase I subunit 1 [KO:K02999] [EC:2.7.7.6]
4333888  uncharacterized protein [KO:K03000]
4325336  transcriptional activator HAP5 [KO:K03004]
4350918  DNA-directed RNA polymerase I subunit rpa49 isoform X1 [KO:K03005]
4327549  DNA-directed RNA polymerases II and IV subunit 5A [KO:K03013]
9270850  DNA-directed RNA polymerases II and IV subunit 5A [KO:K03013]
4349748  DNA-directed RNA polymerase V subunit 5A [KO:K03013]
4351463  DNA-directed RNA polymerase V subunit 5A [KO:K03013]
4343168  DNA-directed RNA polymerases II, IV and V subunit 6A [KO:K03014]
4333343  DNA-directed RNA polymerases II, IV and V subunit 6A [KO:K03014]
4334766  DNA-directed RNA polymerases II, IV and V subunit 8B [KO:K03016]
4341946  DNA-directed RNA polymerases II, IV and V subunit 8B [KO:K03016]
9272152  DNA-directed RNA polymerases II, IV and V subunit 12 [KO:K03009]
9269422  DNA-directed RNA polymerases II, IV and V subunit 12 [KO:K03009]
136357350  DNA-directed RNA polymerases II, IV and V subunit 12-like [KO:K03009]
4349985  DNA-directed RNA polymerases I, II, and III subunit RPABC5 [KO:K03007]
4351671  DNA-directed RNA polymerases I, II, and III subunit RPABC5 [KO:K03007]
4336722  DNA-directed RNA polymerase IV subunit 1 isoform X1 [KO:K16250] [EC:2.7.7.6]
4347810  DNA-directed RNA polymerase IV subunit 1 isoform X1 [KO:K16250] [EC:2.7.7.6]
4328330  DNA-directed RNA polymerase V subunit 1 [KO:K16251] [EC:2.7.7.6]
4337169  DNA-directed RNA polymerases IV and V subunit 2 [KO:K16252] [EC:2.7.7.6]
4344774  DNA-directed RNA polymerases IV and V subunit 2 [KO:K16252] [EC:2.7.7.6]
4337866  DNA-directed RNA polymerase V subunit 7 [KO:K16253]
107278405  DNA-directed RNA polymerase V subunit 7 [KO:K16253]
107277526   
4350089   
Reference
PMID:10499798
  Authors
Zhang G, Campbell EA, Minakhin L, Richter C, Severinov K, Darst SA.
  Title
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.
  Journal
Cell 98:811-824 (1999)
DOI:10.1016/S0092-8674(00)81515-9
Reference
PMID:10784442
  Authors
Cramer P, Bushnell DA, Fu J, Gnatt AL, Maier-Davis B, Thompson NE, Burgess RR, Edwards AM, David PR, Kornberg RD.
  Title
Architecture of RNA polymerase II and implications for the transcription mechanism.
  Journal
Science 288:640-649 (2000)
DOI:10.1126/science.288.5466.640
Reference
PMID:19880312
  Authors
Hirata A, Murakami KS
  Title
Archaeal RNA polymerase.
  Journal
Curr Opin Struct Biol 19:724-31 (2009)
DOI:10.1016/j.sbi.2009.10.006
Reference
PMID:18573085
  Authors
Cramer P, Armache KJ, Baumli S, Benkert S, Brueckner F, Buchen C, Damsma GE, Dengl S, Geiger SR, Jasiak AJ, Jawhari A, Jennebach S, Kamenski T, Kettenberger H, Kuhn CD, Lehmann E, Leike K, Sydow JF, Vannini A
  Title
Structure of eukaryotic RNA polymerases.
  Journal
Annu Rev Biophys 37:337-52 (2008)
DOI:10.1146/annurev.biophys.37.032807.130008
Reference
PMID:31835031
  Authors
Hillen HS, Bartuli J, Grimm C, Dienemann C, Bedenk K, Szalay AA, Fischer U, Cramer P
  Title
Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes.
  Journal
Cell 179:1525-1536.e12 (2019)
DOI:10.1016/j.cell.2019.11.023
KO pathway
ko03020   
LinkDB

DBGET integrated database retrieval system