KEGG   PATHWAY: pvp04360
Entry
pvp04360                    Pathway                                
Name
Axon guidance - Pteropus vampyrus (large flying fox)
Description
Axon guidance represents a key stage in the formation of neuronal network. Axons are guided by a variety of guidance factors, such as netrins, ephrins, Slits, and semaphorins. These guidance cues are read by growth cone receptors, and signal transduction pathways downstream of these receptors converge onto the Rho GTPases to elicit changes in cytoskeletal organization that determine which way the growth cone will turn.
Class
Organismal Systems; Development and regeneration
Pathway map
pvp04360  Axon guidance
pvp04360

Other DBs
GO: 0007411
Organism
Pteropus vampyrus (large flying fox) [GN:pvp]
Gene
105288337  CXCR4; C-X-C chemokine receptor type 4 [KO:K04189]
105288457  RYK; tyrosine-protein kinase RYK [KO:K05128] [EC:2.7.10.1]
105288780  PAK6; serine/threonine-protein kinase PAK 6 [KO:K05735] [EC:2.7.11.1]
105288807  SEMA6D; semaphorin-6D [KO:K06842]
105288852  PPP3CB; serine/threonine-protein phosphatase 2B catalytic subunit beta isoform isoform X1 [KO:K04348] [EC:3.1.3.16]
105288866  CAMK2G; calcium/calmodulin-dependent protein kinase type II subunit gamma isoform X2 [KO:K04515] [EC:2.7.11.17]
105289236  PTPN11; tyrosine-protein phosphatase non-receptor type 11 [KO:K07293] [EC:3.1.3.48]
105289326  MAPK1; mitogen-activated protein kinase 1 isoform X2 [KO:K04371] [EC:2.7.11.24]
105289543  UNC5C; netrin receptor UNC5C isoform X1 [KO:K07521]
105289544  BMPR1B; bone morphogenetic protein receptor type-1B isoform X1 [KO:K13578] [EC:2.7.11.30]
105289635  EPHA6; LOW QUALITY PROTEIN: ephrin type-A receptor 6 [KO:K05107] [EC:2.7.10.1]
105289641  EPHA3; ephrin type-A receptor 3 isoform X1 [KO:K05104] [EC:2.7.10.1]
105289656  ROBO1; roundabout homolog 1 isoform X1 [KO:K06753]
105289658  ROBO2; roundabout homolog 2 isoform X1 [KO:K06754]
105289746  DPYSL5; dihydropyrimidinase-related protein 5 [KO:K07529]
105289863  PLCG2; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 [KO:K05859] [EC:3.1.4.11]
105289883  SLIT3; slit homolog 3 protein [KO:K06850]
105289985  LRRC4C; leucine-rich repeat-containing protein 4C [KO:K07523]
105290177  LRRC4; leucine-rich repeat-containing protein 4 [KO:K16351]
105290238  SMO; smoothened homolog [KO:K06226]
105290266  RGMA; repulsive guidance molecule A [KO:K23096]
105290433  CDC42; cell division control protein 42 homolog isoform X1 [KO:K04393]
105290434  WNT4; protein Wnt-4 [KO:K00408]
105290661  EPHA8; ephrin type-A receptor 8 [KO:K05109] [EC:2.7.10.1]
105290663  EPHB2; ephrin type-B receptor 2 isoform X1 [KO:K05111] [EC:2.7.10.1]
105290773  SEMA4F; semaphorin-4F isoform X1 [KO:K06521]
105290854  SEMA6A; semaphorin-6A isoform X1 [KO:K06842]
105291102  EPHA4; ephrin type-A receptor 4 [KO:K05105] [EC:2.7.10.1]
105291228  EFNB3; ephrin-B3 precursor [KO:K05463]
105291352  NTN1; netrin-1 [KO:K06843]
105291500  ABLIM1; actin-binding LIM protein 1 [KO:K07520]
105291512  FZD3; frizzled-3 isoform X1 [KO:K02329]
105291679  [KO:K06820]
105291887  SSH2; protein phosphatase Slingshot homolog 2 isoform X5 [KO:K05766] [EC:3.1.3.16 3.1.3.48]
105292220  DPYSL2; dihydropyrimidinase-related protein 2 [KO:K07528]
105292284  ROCK1; rho-associated protein kinase 1 isoform X1 [KO:K04514] [EC:2.7.11.1]
105292437  EPHA5; ephrin type-A receptor 5 isoform X1 [KO:K05106] [EC:2.7.10.1]
105292586  ENAH; protein enabled homolog isoform X7 [KO:K05746]
105292638  RGS3; regulator of G-protein signaling 3 isoform X5 [KO:K07524]
105293031  PPP3CA; serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348] [EC:3.1.3.16]
105293249  PLXNC1; LOW QUALITY PROTEIN: plexin-C1 [KO:K06572]
105293300  TRPC4; short transient receptor potential channel 4 isoform X1 [KO:K04967]
105293520  UNC5A; netrin receptor UNC5A [KO:K07521]
105293588  DCC; LOW QUALITY PROTEIN: netrin receptor DCC [KO:K06765]
105294059  KRAS; GTPase KRas isoform X2 [KO:K07827]
105294131  EFNB2; ephrin-B2 [KO:K05463]
105294337  EPHA2; ephrin type-A receptor 2 [KO:K05103] [EC:2.7.10.1]
105294623  RAC1; LOW QUALITY PROTEIN: ras-related C3 botulinum toxin substrate 1 [KO:K04392]
105294909  SEMA3D; semaphorin-3D [KO:K06840]
105294924  SEMA3A; semaphorin-3A [KO:K06840]
105294972  TRPC1; short transient receptor potential channel 1 isoform X2 [KO:K04964]
105295154  SEMA3B; semaphorin-3B isoform X1 [KO:K06840]
105295155  GNAI2; guanine nucleotide-binding protein G(i) subunit alpha-2 [KO:K04630]
105295186  SEMA3F; semaphorin-3F [KO:K06840]
105295226  SEMA3E; semaphorin-3E [KO:K06840]
105295260  FYN; tyrosine-protein kinase Fyn [KO:K05703] [EC:2.7.10.2]
105295461  ROCK2; LOW QUALITY PROTEIN: rho-associated protein kinase 2 [KO:K17388] [EC:2.7.11.1]
105295466  EFNA5; ephrin-A5 isoform X1 [KO:K05462]
105295517  GNAI1; guanine nucleotide-binding protein G(i) subunit alpha-1 [KO:K04630]
105295519  SEMA3C; semaphorin-3C isoform X2 [KO:K06840]
105295781  PPP3R1; calcineurin subunit B type 1 [KO:K06268]
105295998  SLIT2; slit homolog 2 protein [KO:K06839]
105296026  NTN4; netrin-4 [KO:K06845]
105296040  NFATC2; nuclear factor of activated T-cells, cytoplasmic 2 isoform X1 [KO:K17332]
105296048  PARD6B; partitioning defective 6 homolog beta [KO:K06093]
105296266  PPP3R2; calcineurin subunit B type 2 [KO:K06268]
105296373  EFNA1; ephrin-A1 [KO:K05462]
105296374  EFNA4; ephrin-A4 [KO:K05462]
105296428  SEMA4A; LOW QUALITY PROTEIN: semaphorin-4A [KO:K06521]
105296443  EFNA3; ephrin-A3 [KO:K05462]
105296470  MYL9; myosin regulatory light polypeptide 9 [KO:K12755]
105296513  SRC; proto-oncogene tyrosine-protein kinase Src [KO:K05704] [EC:2.7.10.2]
105296521  PLCG1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 [KO:K01116] [EC:3.1.4.11]
105296533  PPP3CC; serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform isoform X1 [KO:K04348] [EC:3.1.3.16]
105296550  NRAS; GTPase NRas isoform X1 [KO:K07828]
105296605  PIK3R2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649]
105296724  LRIG2; leucine-rich repeats and immunoglobulin-like domains protein 2 isoform X1 [KO:K24609]
105296871  ROBO3; roundabout homolog 3 [KO:K06755]
105296999  EPHA7; ephrin type-A receptor 7 [KO:K05108] [EC:2.7.10.1]
105297140  [KO:K02649]
105297202  GNAI3; guanine nucleotide-binding protein G(k) subunit alpha [KO:K04630]
105297256  WNT5B; protein Wnt-5b isoform X1 [KO:K00444]
105297458  NTNG1; netrin-G1 isoform X1 [KO:K07522]
105297521  RND1; rho-related GTP-binding protein Rho6 [KO:K07531]
105297614  PAK1; serine/threonine-protein kinase PAK 1 [KO:K04409] [EC:2.7.11.1]
105297702  PRKCA; protein kinase C alpha type isoform X1 [KO:K02677] [EC:2.7.11.13]
105297915  CFL1; cofilin-1 [KO:K05765]
105297966  RHOD; LOW QUALITY PROTEIN: rho-related GTP-binding protein RhoD [KO:K07530]
105298112  BMPR2; bone morphogenetic protein receptor type-2 [KO:K04671] [EC:2.7.11.30]
105298272  TRPC6; short transient receptor potential channel 6 isoform X1 [KO:K04969]
105298281  SEMA5B; semaphorin-5B isoform X1 [KO:K06841]
105298669  ABL1; tyrosine-protein kinase ABL1 [KO:K06619] [EC:2.7.10.2]
105298679  NTNG2; netrin-G2 [KO:K16359]
105298743  [KO:K19862]
105298753  NCK2; cytoplasmic protein NCK2 [KO:K19862]
105298780  BMP7; bone morphogenetic protein 7 [KO:K16621]
105298927  SHH; LOW QUALITY PROTEIN: sonic hedgehog protein [KO:K11988]
105299021  RAF1; RAF proto-oncogene serine/threonine-protein kinase isoform X1 [KO:K04366] [EC:2.7.11.1]
105299065  SRGAP3; SLIT-ROBO Rho GTPase-activating protein 3 isoform X3 [KO:K07526]
105299371  PIK3R1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X3 [KO:K02649]
105299441  CAMK2A; calcium/calmodulin-dependent protein kinase type II subunit alpha [KO:K04515] [EC:2.7.11.17]
105299451  PAK5; serine/threonine-protein kinase PAK 5 [KO:K05736] [EC:2.7.11.1]
105299478  ABLIM3; actin-binding LIM protein 3 [KO:K07520]
105299592  SEMA5A; semaphorin-5A [KO:K06841]
105299621  EFNB1; ephrin-B1 [KO:K05463]
105299733  EPHB4; ephrin type-B receptor 4 [KO:K05113] [EC:2.7.10.1]
105299770  LIMK1; LIM domain kinase 1 [KO:K05743] [EC:2.7.11.1]
105299863  WNT5A; protein Wnt-5a isoform X5 [KO:K00444]
105300090  UNC5D; netrin receptor UNC5D isoform X1 [KO:K07521]
105300125  UNC5B; netrin receptor UNC5B [KO:K07521]
105300174  PAK4; serine/threonine-protein kinase PAK 4 isoform X1 [KO:K05734] [EC:2.7.11.1]
105300253  SEMA4D; semaphorin-4D [KO:K06521]
105300269  MET; hepatocyte growth factor receptor isoform X1 [KO:K05099] [EC:2.7.10.1]
105300310  PLXNA2; plexin-A2 [KO:K06820]
105300379  SEMA3G; semaphorin-3G [KO:K06840]
105300648  SRGAP2; SLIT-ROBO Rho GTPase-activating protein 2 isoform X1 [KO:K07526]
105300818  EPHB1; ephrin type-B receptor 1 [KO:K05110] [EC:2.7.10.1]
105300826  NCK1; cytoplasmic protein NCK1 [KO:K07365]
105301081  SRGAP1; SLIT-ROBO Rho GTPase-activating protein 1 isoform X1 [KO:K07526]
105301137  RAC3; ras-related C3 botulinum toxin substrate 3 [KO:K07861]
105301237  ABLIM2; actin-binding LIM protein 2 [KO:K07520]
105301304  GSK3B; glycogen synthase kinase-3 beta isoform X1 [KO:K03083] [EC:2.7.11.26]
105301403  SLIT1; slit homolog 1 protein [KO:K06838]
105301596  PAK3; serine/threonine-protein kinase PAK 3 [KO:K05733] [EC:2.7.11.1]
105301602  TRPC5; short transient receptor potential channel 5 [KO:K04968]
105301735  RRAS; ras-related protein R-Ras [KO:K07829]
105302210  TRPC3; LOW QUALITY PROTEIN: short transient receptor potential channel 3 [KO:K04966]
105302235  EFNA2; ephrin-A2 [KO:K05462]
105302356  PLXNB1; plexin-B1 isoform X2 [KO:K06821]
105302383  RHOA; transforming protein RhoA [KO:K04513]
105302484  L1CAM; neural cell adhesion molecule L1 isoform X2 [KO:K06550]
105302502  PLXNA3; plexin-A3 [KO:K06820]
105302523  PLXNB3; plexin-B3 [KO:K06821]
105302767  CAMK2D; calcium/calmodulin-dependent protein kinase type II subunit delta [KO:K04515] [EC:2.7.11.17]
105302880  FES; tyrosine-protein kinase Fes/Fps isoform X1 [KO:K07527] [EC:2.7.10.2]
105303008  ITGB1; integrin beta-1 [KO:K05719]
105303009  NRP1; neuropilin-1 isoform X1 [KO:K06724]
105303015  PARD3; partitioning defective 3 homolog [KO:K04237]
105303144  PDPK1; 3-phosphoinositide-dependent protein kinase 1 [KO:K06276] [EC:2.7.11.1]
105303269  CFL2; cofilin-2 isoform X1 [KO:K05765]
105303329  NEO1; neogenin [KO:K06766]
105303355  NTN3; netrin-3 [KO:K06844]
105303610  PRKCZ; LOW QUALITY PROTEIN: protein kinase C zeta type [KO:K18952] [EC:2.7.11.13]
105303753  CDK5; cyclin-dependent-like kinase 5 isoform X1 [KO:K02090] [EC:2.7.11.22]
105303861  SEMA6C; semaphorin-6C [KO:K06842]
105303955  SSH1; protein phosphatase Slingshot homolog 1 isoform X1 [KO:K05766] [EC:3.1.3.16 3.1.3.48]
105304119  EPHB6; ephrin type-B receptor 6 isoform X1 [KO:K05114] [EC:2.7.10.1]
105304132  EPHA1; ephrin type-A receptor 1 [KO:K05102] [EC:2.7.10.1]
105304170  CXCL12; stromal cell-derived factor 1 isoform X1 [KO:K10031]
105304566  MAPK3; mitogen-activated protein kinase 3 isoform X1 [KO:K04371] [EC:2.7.11.24]
105304635  SEMA4G; semaphorin-4G isoform X1 [KO:K06521]
105304708  RASA1; ras GTPase-activating protein 1 [KO:K04352]
105305018  BOC; brother of CDO [KO:K20020]
105305176  SEMA4B; semaphorin-4B isoform X1 [KO:K06521]
105305242  [KO:K12757]
105305243  [KO:K12757]
105305725  PARD6A; partitioning defective 6 homolog alpha isoform X3 [KO:K06093]
105305747  NFATC3; nuclear factor of activated T-cells, cytoplasmic 3 isoform X1 [KO:K17333]
105305933  HRAS; GTPase HRas isoform X1 [KO:K02833]
105305998  NGEF; ephexin-1 [KO:K07525]
105306755  SEMA6B; semaphorin-6B [KO:K06842]
105306784  SEMA4C; semaphorin-4C [KO:K06521]
105306831  SEMA7A; semaphorin-7A [KO:K06529]
105306914  EPHB3; ephrin type-B receptor 3 isoform X1 [KO:K05112] [EC:2.7.10.1]
105306915  PTCH1; protein patched homolog 1 isoform X3 [KO:K06225]
105307215  PIK3CD; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform isoform X1 [KO:K00922] [EC:2.7.1.153]
105307575  PIK3CA; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922] [EC:2.7.1.153]
105307748  PTK2; focal adhesion kinase 1 [KO:K05725] [EC:2.7.10.2]
105308293  PLXNB2; plexin-B2 [KO:K06821]
105308348  LIMK2; LIM domain kinase 2 isoform X1 [KO:K05744] [EC:2.7.11.1]
105308762  CAMK2B; calcium/calmodulin-dependent protein kinase type II subunit beta [KO:K04515] [EC:2.7.11.17]
105308956  PIK3CB; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform X2 [KO:K00922] [EC:2.7.1.153]
105309085  ILK; integrin-linked protein kinase isoform X1 [KO:K06272] [EC:2.7.11.1]
105309403  NFATC4; nuclear factor of activated T-cells, cytoplasmic 4 [KO:K17334]
105309511  ARHGEF12; rho guanine nucleotide exchange factor 12 isoform X1 [KO:K07532]
105309794  PARD6G; partitioning defective 6 homolog gamma [KO:K06093]
105309828  [KO:K07293] [EC:3.1.3.48]
105309865  MYL5; myosin light chain 5 isoform X2 [KO:K12753]
105309919  SSH3; protein phosphatase Slingshot homolog 3 isoform X3 [KO:K05766] [EC:3.1.3.16 3.1.3.48]
105310172  PAK2; serine/threonine-protein kinase PAK 2 [KO:K04410] [EC:2.7.11.1]
105311532  RAC2; ras-related C3 botulinum toxin substrate 2 isoform X2 [KO:K07860]
Compound
C00076  Calcium cation
Reference
  Authors
Guan KL, Rao Y.
  Title
Signalling mechanisms mediating neuronal responses to guidance cues.
  Journal
Nat Rev Neurosci 4:941-56 (2003)
DOI:10.1038/nrn1254
Reference
  Authors
Govek EE, Newey SE, Van Aelst L.
  Title
The role of the Rho GTPases in neuronal development.
  Journal
Genes Dev 19:1-49 (2005)
DOI:10.1101/gad.1256405
Reference
  Authors
Huber AB, Kolodkin AL, Ginty DD, Cloutier JF.
  Title
Signaling at the growth cone: ligand-receptor complexes and the control of axon growth and guidance.
  Journal
Annu Rev Neurosci 26:509-63 (2003)
DOI:10.1146/annurev.neuro.26.010302.081139
Reference
  Authors
Negishi M, Oinuma I, Katoh H.
  Title
Plexins: axon guidance and signal transduction.
  Journal
Cell Mol Life Sci 62:1363-71 (2005)
DOI:10.1007/s00018-005-5018-2
Reference
  Authors
Huot J.
  Title
Ephrin signaling in axon guidance.
  Journal
Prog Neuropsychopharmacol Biol Psychiatry 28:813-8 (2004)
DOI:10.1016/j.pnpbp.2004.05.025
Reference
  Authors
Patel BN, Van Vactor DL.
  Title
Axon guidance: the cytoplasmic tail.
  Journal
Curr Opin Cell Biol 14:221-9 (2002)
DOI:10.1016/S0955-0674(02)00308-3
Reference
  Authors
Yu TW, Bargmann CI.
  Title
Dynamic regulation of axon guidance.
  Journal
Nat Neurosci 4 Suppl:1169-76 (2001)
DOI:10.1038/nn748
Reference
  Authors
Dickson BJ.
  Title
Molecular mechanisms of axon guidance.
  Journal
Science 298:1959-64 (2002)
DOI:10.1126/science.1072165
Reference
  Authors
Barallobre MJ, Pascual M, Del Rio JA, Soriano E.
  Title
The Netrin family of guidance factors: emphasis on Netrin-1 signalling.
  Journal
Brain Res Brain Res Rev 49:22-47 (2005)
DOI:10.1016/j.brainresrev.2004.11.003
Reference
  Authors
Sabatier C, Plump AS, Le Ma, Brose K, Tamada A, Murakami F, Lee EY, Tessier-Lavigne M.
  Title
The divergent Robo family protein rig-1/Robo3 is a negative regulator of slit responsiveness required for midline crossing by commissural axons.
  Journal
Cell 117:157-69 (2004)
DOI:10.1016/S0092-8674(04)00303-4
Reference
  Authors
Fujita Y, Yamashita T
  Title
Axon growth inhibition by RhoA/ROCK in the central nervous system.
  Journal
Front Neurosci 8:338 (2014)
DOI:10.3389/fnins.2014.00338
Reference
  Authors
Yamashita T, Mueller BK, Hata K
  Title
Neogenin and repulsive guidance molecule signaling in the central nervous system.
  Journal
Curr Opin Neurobiol 17:29-34 (2007)
DOI:10.1016/j.conb.2006.12.001
Reference
  Authors
van Erp S, van den Heuvel DMA, Fujita Y, Robinson RA, Hellemons AJCGM, Adolfs Y, Van Battum EY, Blokhuis AM, Kuijpers M, Demmers JAA, Hedman H, Hoogenraad CC, Siebold C, Yamashita T, Pasterkamp RJ
  Title
Lrig2 Negatively Regulates Ectodomain Shedding of Axon Guidance Receptors by ADAM Proteases.
  Journal
Dev Cell 35:537-552 (2015)
DOI:10.1016/j.devcel.2015.11.008
Related
pathway
pvp04010  MAPK signaling pathway
pvp04060  Cytokine-cytokine receptor interaction
pvp04310  Wnt signaling pathway
pvp04810  Regulation of actin cytoskeleton
KO pathway
ko04360   

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