KEGG   PATHWAY: esp04120
Entry
esp04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Etheostoma spectabile (orangethroat darter)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
esp04120  Ubiquitin mediated proteolysis
esp04120

Other DBs
GO: 0016567
Organism
Etheostoma spectabile (orangethroat darter) [GN:esp]
Gene
116669874  [KO:K10456]
116669955  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
116670727  brca1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
116670804  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
116671212  [KO:K09561] [EC:2.3.2.27]
116671336  [KO:K03873]
116671375  ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
116671549  [KO:K06689] [EC:2.3.2.23]
116671758  [KO:K04696]
116672031  cul2; cullin-2 [KO:K03870]
116672309  [KO:K05633] [EC:2.3.2.26]
116672463  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
116672648  ube2w; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
116672649  eloc; elongin-C [KO:K03872]
116672966  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
116672988  [KO:K10580] [EC:2.3.2.23]
116673210  [KO:K06643] [EC:2.3.2.27]
116673682  [KO:K10587] [EC:2.3.2.26]
116673994  [KO:K08285] [EC:2.3.2.27]
116678815  cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
116679238  cul1; cullin-1 [KO:K03347]
116679545  [KO:K06689] [EC:2.3.2.23]
116683111  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
116683269  cul3; cullin-3 isoform X1 [KO:K03869]
116684695  [KO:K10594] [EC:2.3.2.26]
116685227  rnf7; RING-box protein 2 [KO:K10611]
116685740  [KO:K10612]
116685759  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
116685937  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
116685966  [KO:K06689] [EC:2.3.2.23]
116686079  [KO:K06689] [EC:2.3.2.23]
116686278  [KO:K20217] [EC:2.3.2.23]
116686280  [KO:K20217] [EC:2.3.2.23]
116686657  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
116686663  [KO:K10575] [EC:2.3.2.23]
116686954  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
116686984  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
116687079  anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
116687126  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
116687208  ube2j2; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
116687496  ube2f; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
116687731  [KO:K05632] [EC:2.3.2.26]
116687905  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
116688168  [KO:K03178] [EC:6.2.1.45]
116688210  [KO:K10099]
116688231  [KO:K10686] [EC:6.2.1.64]
116688420  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
116688841  [KO:K10582] [EC:2.3.2.23]
116688918  nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
116689192  traf6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
116689274  ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
116689280  ube3b; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
116689284  [KO:K16063] [EC:2.3.2.-]
116689290  [KO:K06689] [EC:2.3.2.23]
116689303  [KO:K03354]
116689307  [KO:K10575] [EC:2.3.2.23]
116689554  fbxo4; F-box only protein 4 [KO:K10291]
116689598  ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
116689844  [KO:K07868]
116690064  rchy1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
116690081  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
116690106  ubox5; RING finger protein 37 [KO:K10600] [EC:2.3.2.27]
116690128  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
116690183  rhobtb2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
116690329  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
116690684  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
116690686  ddb1; DNA damage-binding protein 1 [KO:K10610]
116691149  [KO:K10685] [EC:6.2.1.45]
116691238  [KO:K22518] [EC:2.3.2.27]
116691441  [KO:K20217] [EC:2.3.2.23]
116691524  [KO:K20217] [EC:2.3.2.23]
116691581  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
116691769  nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
116692043  birc7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
116692315  [KO:K10686] [EC:6.2.1.64]
116692424  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
116692497  [KO:K05632] [EC:2.3.2.26]
116692982  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
116693306  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
116693380  [KO:K05630] [EC:2.3.2.26]
116693389  [KO:K05630] [EC:2.3.2.26]
116693672  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
116693699  ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
116693917  [KO:K10582] [EC:2.3.2.23]
116694003  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
116694188  [KO:K10615] [EC:2.3.2.26]
116694191  [KO:K10685] [EC:6.2.1.45]
116694255  [KO:K04706] [EC:2.3.2.-]
116694356  det1; DET1 homolog [KO:K10571]
116694429  [KO:K04506] [EC:2.3.2.27]
116694651  [KO:K10576] [EC:2.3.2.23]
116694797  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
116694996  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
116695001  keap1; kelch-like ECH-associated protein 1 [KO:K10456]
116695138  [KO:K02207] [EC:2.3.2.23]
116695171  pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
116695921  [KO:K03364]
116695929  [KO:K03351]
116696026  herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
116696041  [KO:K10587] [EC:2.3.2.26]
116696381  [KO:K03362]
116696710  cul4b; cullin-4B [KO:K10609]
116696756  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
116697056  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
116697099  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
116697183  fancl; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
116697275  [KO:K04649] [EC:2.3.2.23]
116697435  xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
116697574  cdc16; cell division cycle protein 16 homolog [KO:K03353]
116697803  [KO:K10573] [EC:2.3.2.23]
116698035  [KO:K08285] [EC:2.3.2.27]
116698226  [KO:K10447]
116698633  cdc20; cell division cycle protein 20 homolog [KO:K03363]
116698802  [KO:K03869]
116698959  [KO:K03364]
116699085  [KO:K03364]
116699276  aire; autoimmune regulator [KO:K10603]
116699335  [KO:K10143] [EC:2.3.2.27]
116699729  [KO:K02207] [EC:2.3.2.23]
116699736  [KO:K02207] [EC:2.3.2.23]
116699989  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
116700009  [KO:K16060]
116700034  smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
116700064  cdc23; cell division cycle protein 23 homolog [KO:K03355]
116700182  skp1; LOW QUALITY PROTEIN: S-phase kinase-associated protein 1 [KO:K03094]
116700199  [KO:K04707] [EC:2.3.2.27]
116700422  cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
116700545  ubb; LOW QUALITY PROTEIN: polyubiquitin-B [KO:K08770]
116700666  cul5; cullin-5 isoform X1 [KO:K10612]
116700677  [KO:K10447]
116700931  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
116700985  ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
116701033  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
116701102  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
116701416  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
116702294  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
116702370  [KO:K04678] [EC:2.3.2.26]
116702681  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
116702801  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
116702811  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
116702994  [KO:K09561] [EC:2.3.2.27]
116703057  [KO:K04678] [EC:2.3.2.26]
116703073  socs1; suppressor of cytokine signaling 1 [KO:K04694]
116703202  ube2k; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
116703276  [KO:K04696]
116703320  [KO:K03873]
116703397  [KO:K04706] [EC:2.3.2.-]
116703476  mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
116703794  [KO:K10577]
116703877  herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
116704054  skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
116704317  [KO:K04552] [EC:2.3.2.23]
116704410  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
116704554  [KO:K10575] [EC:2.3.2.23]
116704627  [KO:K06689] [EC:2.3.2.23]
116704685  [KO:K10594] [EC:2.3.2.26]
116704777  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
116705352  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
116705481  [KO:K04694]
116705504  [KO:K06689] [EC:2.3.2.23]
116705618  birc6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
116706465  ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
116707461  [KO:K04696]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
esp03050  Proteasome
KO pathway
ko04120   

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