KEGG   PATHWAY: mcoc04120
Entry
mcoc04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Mastomys coucha (southern multimammate mouse)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mcoc04120  Ubiquitin mediated proteolysis
mcoc04120

Other DBs
GO: 0016567
Organism
Mastomys coucha (southern multimammate mouse) [GN:mcoc]
Gene
116068076  [KO:K06689] [EC:2.3.2.23]
116068219  Ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
116068293  Fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
116068366  Anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
116068375  Anapc5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
116068734  [KO:K10580] [EC:2.3.2.23]
116068744  Smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
116068929  Cul4a; cullin-4A [KO:K10609]
116068942  Cdc16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
116069280  Ube2d4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
116069335  Rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
116069469  Uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
116069632  Anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
116069789  Siah1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
116070124  Wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
116070634  Fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
116071065  Ube2k; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
116071418  Uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
116072020  Ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
116072034  Anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
116072100  Cul5; cullin-5 isoform X1 [KO:K10612]
116072502  Pml; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
116072766  [KO:K16060]
116072810  [KO:K16060]
116072987  Nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
116073045  Rnf7; RING-box protein 2 isoform X1 [KO:K10611]
116073071  Uba7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
116073401  Uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
116073545  Cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
116073593  Pias1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
116073866  Herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
116073905  Keap1; kelch-like ECH-associated protein 1 [KO:K10456]
116073933  Ube4a; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
116074216  [KO:K02927]
116074252  Rhobtb1; rho-related BTB domain-containing protein 1 [KO:K07868]
116074294  Aire; autoimmune regulator isoform X1 [KO:K10603]
116074575  Ube2d1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
116074773  Cul7; cullin-7 [KO:K10613]
116074817  Ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
116075264  Herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
116075418  Klhl13; kelch-like protein 13 [KO:K10447]
116075461  Anapc16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
116075659  Ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
116075863  Fzr1; fizzy-related protein homolog [KO:K03364]
116075923  Mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
116076265  Cdc34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
116076358  Rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
116076482  Pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
116076726  Stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
116076805  Prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
116076823  Cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
116077006  Ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
116077072  Ube2i; SUMO-conjugating enzyme UBC9 isoform X1 [KO:K10577]
116077159  Ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
116077385  Ubb; polyubiquitin-B [KO:K08770]
116077431  Trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
116077578  Smurf2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
116077726  [KO:K03873]
116077899  Ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
116078072  [KO:K06688] [EC:2.3.2.23]
116078150  Anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
116078246  Skp1; S-phase kinase-associated protein 1 isoform X1 [KO:K03094]
116078408  Socs3; suppressor of cytokine signaling 3 [KO:K04696]
116078654  Ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
116078743  Brca1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
116078965  Fbxw11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
116079101  Xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
116079172  Elob; elongin-B [KO:K03873]
116079818  Birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
116080143  [KO:K08770]
116081851  Ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
116082269  [KO:K10583] [EC:2.3.2.23]
116082362  Nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
116082443  [KO:K08770]
116083207  Fbxo4; F-box only protein 4 [KO:K10291]
116083439  Ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
116083752  Ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
116083772  Skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
116083778  Map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
116084241  Ube2e1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
116084343  Mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
116084565  Rhobtb2; rho-related BTB domain-containing protein 2 [KO:K07868]
116085165  Socs1; suppressor of cytokine signaling 1 isoform X1 [KO:K04694]
116085393  [KO:K20217] [EC:2.3.2.23]
116085642  Ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
116085649  Ube2l3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
116085981  Cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
116086793  Cul2; cullin-2 isoform X1 [KO:K03870]
116086976  Cdc23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
116087004  Ube2d2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
116087270  Nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
116087372  Pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
116087411  [KO:K04552] [EC:2.3.2.23]
116087665  [KO:K08770]
116087989  Ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
116088033  Wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
116088204  Ube2w; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
116088209  Eloc; elongin-C [KO:K03872]
116088639  Cul3; cullin-3 isoform X1 [KO:K03869]
116088669  Trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
116088762  Ube2f; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
116089750  Huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
116089805  Anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
116090369  Ube2e3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
116090402  Ube2l6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
116090466  Ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
116090551  Traf6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
116090702  Mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
116090900  Anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
116090941  Ubox5; RING finger protein 37 [KO:K10600] [EC:2.3.2.27]
116091228  Itch; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
116091238  Ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
116091284  Cul4b; cullin-4B [KO:K10609]
116091548  Birc7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
116092530  Ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
116093059  Fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
116093188  Ube2q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
116093467  Pias3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
116093504  [KO:K06688] [EC:2.3.2.23]
116093820  Ube2d3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
116093998  [KO:K10580] [EC:2.3.2.23]
116094066  [KO:K06689] [EC:2.3.2.23]
116095672  Fbxo2; F-box only protein 2 [KO:K10099]
116095834  Ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
116096104  Cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
116096143  Trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
116096222  Klhl9; kelch-like protein 9 [KO:K10447]
116096291  Ube2u; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
116096523  Cdc20; cell division cycle protein 20 homolog [KO:K03363]
116097033  Ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
116097166  Ube2j2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
116097599  Ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
116098531  Cul1; cullin-1 [KO:K03347]
116098675  Ube2h; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
116098990  Herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
116099314  Uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
116099407  Vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
116099715  [KO:K10582] [EC:2.3.2.23]
116101411  [KO:K06689] [EC:2.3.2.23]
116101567  Ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
116101658  Ube2m; NEDD8-conjugating enzyme Ubc12 isoform X1 [KO:K10579] [EC:2.3.2.34]
116101683  Sae1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
116101773  Cblc; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
116102011  Uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
116102157  Cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
116102302  Herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
116102312  Ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
116102427  Det1; DET1 homolog isoform X1 [KO:K10571]
116102686  Anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
116103427  Syvn1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
116103557  Ddb1; DNA damage-binding protein 1 [KO:K10610]
116103569  Prpf19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
116103918  Btrc; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
116104481  Rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
116104531  Anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mcoc03050  Proteasome
KO pathway
ko04120   

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