KEGG   PATHWAY: tfs04120
Entry
tfs04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Takifugu flavidus (sansaifugu)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
tfs04120  Ubiquitin mediated proteolysis
tfs04120

Other DBs
GO: 0016567
Organism
Takifugu flavidus (sansaifugu) [GN:tfs]
Gene
130537125  ubb; LOW QUALITY PROTEIN: polyubiquitin-B [KO:K08770]
130517232  polyubiquitin-B-like [KO:K08770]
130528283  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
130533969  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
130530583  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
130525025  uba7; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
130534630  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
130536404  uba2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
130529692  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
130527803  uba6; LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
130530879  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
130537251  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
130523970  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
130533448  ubiquitin-conjugating enzyme E2 D2-like [KO:K06689] [EC:2.3.2.23]
130513328  ubiquitin-conjugating enzyme E2-17 kDa-like isoform X1 [KO:K06689] [EC:2.3.2.23]
130525303  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
130531496  ubiquitin-conjugating enzyme E2 2-like isoform X1 [KO:K06689] [EC:2.3.2.23]
130531576  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
130517873  ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
130517874  ubiquitin-conjugating enzyme E2 E2-like isoform X1 [KO:K20217] [EC:2.3.2.23]
130532459  ube2e2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
130537088  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
130518981  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
130525262  ubiquitin-conjugating enzyme E2 G1-like isoform X1 [KO:K10575] [EC:2.3.2.23]
130537716  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
130517500  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
130538002  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
130536655  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
130519498  ube2h; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
130536951  ubiquitin-conjugating enzyme E2 H-like [KO:K10576] [EC:2.3.2.23]
130514777  SUMO-conjugating enzyme UBC9-like [KO:K10577]
130526537  ube2ib; SUMO-conjugating enzyme UBC9-A isoform X1 [KO:K10577]
130516125  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
130523698  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
130528027  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
130531295  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
130517256  ube2l3a; ubiquitin-conjugating enzyme E2 L3a isoform X1 [KO:K04552] [EC:2.3.2.23]
130525810  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
130520237  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
130519048  ube2nb; ubiquitin-conjugating enzyme E2Nb [KO:K10580] [EC:2.3.2.23]
130536496  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
130527276  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
130535863  ubiquitin-conjugating enzyme E2 Q2-like isoform X1 [KO:K10582] [EC:2.3.2.23]
130517715  ube2q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
130518181  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
130529036  cdc34a; cell division cycle 34 homolog (S. cerevisiae) a [KO:K02207] [EC:2.3.2.23]
130524438  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
130538471  ubiquitin-conjugating enzyme E2 R1-like [KO:K02207] [EC:2.3.2.23]
130533031  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
130514194  ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
130514347  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
130533871  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
130522598  ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
130528952  ube3a; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
130525577  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
130513922  ube3c; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
130527882  E3 ubiquitin-protein ligase SMURF2-like isoform X1 [KO:K04678] [EC:2.3.2.26]
130514654  smurf2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
130514815  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
130529808  itchb; itchy E3 ubiquitin protein ligase b isoform X1 [KO:K05632] [EC:2.3.2.26]
130524956  E3 ubiquitin-protein ligase Itchy-like [KO:K05632] [EC:2.3.2.26]
130513418  NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
130536824  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
130535507  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
130521943  nedd4a; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
130517466  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
130530138  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
130532804  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
130518410  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
130516967  probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
130529322  herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
130527106  herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
130533427  herc4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
130535397  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
130529485  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
130534001  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
130525381  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
130531291  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
130525403  ubox5; RING finger protein 37 isoform X1 [KO:K10600]
130518976  mdm2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
130534686  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
130538061  E3 ubiquitin-protein ligase CBL-like [KO:K04707] [EC:2.3.2.27]
130537306  cblb; E3 ubiquitin-protein ligase CBL-B-B isoform X1 [KO:K22517] [EC:2.3.2.27]
130521190  cblc; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
130533547  prkn; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
130535982  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
130515755  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
130538709  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
130525697  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
130537988  birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
130531145  xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
130529575  birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
130536212  pias1b; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
130516135  E3 SUMO-protein ligase PIAS1-like isoform X1 [KO:K04706] [EC:2.3.2.-]
130525400  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
130528783  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
130531024  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
130533125  E3 ubiquitin-protein ligase NHLRC1-like [KO:K10602] [EC:2.3.2.27]
130539031  aire; autoimmune regulator isoform X1 [KO:K10603]
130515249  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
130531204  breast cancer type 1 susceptibility protein homolog isoform X1 [KO:K10605] [EC:2.3.2.27]
130533577  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
130522633  E3 ubiquitin-protein ligase Midline-1-like isoform X1 [KO:K08285] [EC:2.3.2.27]
130529332  mid1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
130517756  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
130537700  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
130514717  E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
130514727  RING-box protein 1-like [KO:K03868] [EC:2.3.2.32]
130513650  cullin-1 [KO:K03347]
130537252  skp1; S-phase kinase-associated protein 1 [KO:K03094]
130531069  fbxw11a; F-box and WD repeat domain-containing 11-A isoform X1 [KO:K03362]
130517534  skp2; S-phase kinase-associated protein 2 [KO:K03875]
130527069  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
130524286  fbxo2; F-box only protein 2 [KO:K10099]
130525282  fbxo4; F-box only protein 4 [KO:K10291]
130513431  cul2; cullin-2 [KO:K03870]
130514196  elongin-C [KO:K03872]
130515309  elob; elongin-B isoform X1 [KO:K03873]
130531928  elongin-B-like [KO:K03873]
130523816  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
130535031  cullin-3 [KO:K03869]
130539000  cullin-3-like [KO:K03869]
130526990  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
130540400  keap1a; kelch-like ECH-associated protein 1A [KO:K10456]
130530188  si:rp71-68n21.9; kelch-like protein 9 isoform X1 [KO:K10447]
130537429  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
130526343  rhobtb2a; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
130526469  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
130521742  cul4a; cullin-4A [KO:K10609]
130531413  cul4b; cullin-4B [KO:K10609]
130521914  ddb1; DNA damage-binding protein 1 [KO:K10610]
130535744  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
130526152  ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
130536418  det1; DET1 homolog [KO:K10571]
130535516  rnf7; RING-box protein 2 [KO:K10611]
130537793  cul5b; cullin-5 isoform X1 [KO:K10612]
130528086  suppressor of cytokine signaling 1-like [KO:K04694]
130514473  socs1a; suppressor of cytokine signaling 1a isoform X1 [KO:K04694]
130533160  suppressor of cytokine signaling 3-like [KO:K04696]
130515054  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
130525434  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
130527925  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
130515599  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
130525488  cell division cycle protein 20 homolog B-like [KO:K03363]
130525950  cell division cycle protein 20 homolog B-like [KO:K03363]
130538449  cell division cycle protein 20 homolog [KO:K03363]
130539186  cell division cycle protein 20 homolog [KO:K03363]
130538916  fzr1b; fizzy-related protein homolog isoform X1 [KO:K03364]
130538956  fzr1a; fizzy/cell division cycle 20 related 1a [KO:K03364]
130534350  anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
130520102  cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
130529269  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
130526320  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
130526070  cdc16; cell division cycle protein 16 homolog [KO:K03353]
130525258  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
130537420  cdc23; cell division cycle protein 23 homolog [KO:K03355]
130522580  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
130517291  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
130536468  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
130535378  anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
130522063  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
tfs03050  Proteasome
KO pathway
ko04120   
LinkDB

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