KEGG   PATHWAY: shr04120
Entry
shr04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Sarcophilus harrisii (Tasmanian devil)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
shr04120  Ubiquitin mediated proteolysis
shr04120

Other DBs
GO: 0016567
Organism
Sarcophilus harrisii (Tasmanian devil) [GN:shr]
Gene
100913196  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
100913325  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
100913401  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X2 [KO:K22517] [EC:2.3.2.27]
100913470  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
100913571  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X2 [KO:K04416] [EC:2.7.11.25]
100913967  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
100914028  [KO:K16060]
100914310  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
100914432  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
100914530  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
100914679  HUWE1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
100914698  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
100914729  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
100914788  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
100915156  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
100915218  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
100915294  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
100915370  [KO:K10575] [EC:2.3.2.23]
100915386  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
100915663  ELOB; elongin-B [KO:K03873]
100915944  TRIM37; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
100916197  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
100916232  DDB2; DNA damage-binding protein 2 [KO:K10140]
100916239  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
100916490  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
100916584  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
100916700  CDC34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
100916847  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
100916983  UBE3A; ubiquitin-protein ligase E3A isoform X2 [KO:K10587] [EC:2.3.2.26]
100917042  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
100917107  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
100917130  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
100917531  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
100917553  [KO:K10580] [EC:2.3.2.23]
100917658  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
100917992  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
100918276  UBE4A; ubiquitin conjugation factor E4 A isoform X2 [KO:K10596] [EC:2.3.2.27]
100918278  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
100918404  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
100918440  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
100918596  BIRC7; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 7 [KO:K16061]
100918650  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
100919125  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
100919188  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
100919271  [KO:K20217] [EC:2.3.2.23]
100919575  FZR1; fizzy-related protein homolog [KO:K03364]
100919874  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
100920292  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
100920321  [KO:K06643] [EC:2.3.2.27]
100920434  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
100920472  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
100920618  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
100920722  CUL4A; cullin-4A [KO:K10609]
100920736  ANAPC11; anaphase-promoting complex subunit 11 isoform X2 [KO:K03358]
100920890  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
100920965  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
100920986  CDC20; LOW QUALITY PROTEIN: cell division cycle protein 20 homolog [KO:K03363]
100921039  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
100921088  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
100921250  CUL3; cullin-3 [KO:K03869]
100921292  CDC23; cell division cycle protein 23 homolog [KO:K03355]
100921419  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
100921506  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
100922331  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
100922586  ANAPC10; anaphase-promoting complex subunit 10 isoform X2 [KO:K03357]
100922829  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
100922952  SIAH1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
100923383  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
100923897  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
100923929  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
100924021  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
100924319  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
100924513  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
100925173  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
100925191  PIAS3; E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
100925424  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
100925489  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X6 [KO:K13305] [EC:2.3.2.26]
100925642  BTRC; F-box/WD repeat-containing protein 1A isoform X4 [KO:K03362]
100925704  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
100925763  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X5 [KO:K10604] [EC:2.3.2.27]
100925902  PML; protein PML [KO:K10054] [EC:2.3.2.-]
100925927  DET1; DET1 homolog [KO:K10571]
100926091  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
100926111  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
100926168  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
100926417  CUL1; cullin-1 [KO:K03347]
100926526  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
100926850  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
100926872  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
100927026  [KO:K20217] [EC:2.3.2.23]
100927230  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
100927251  CUL5; cullin-5 isoform X1 [KO:K10612]
100927300  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
100927470  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
100927551  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
100927599  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
100928155  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
100928240  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
100928324  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
100928425  ELOC; elongin-C [KO:K03872]
100928463  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
100928566  AIRE; autoimmune regulator [KO:K10603]
100929092  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
100929349  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
100929391  [KO:K10447]
100929711  FBXO4; F-box only protein 4 [KO:K10291]
100929865  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
100930487  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100930499  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X3 [KO:K10686] [EC:6.2.1.64]
100930602  ANAPC15; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 15 [KO:K25228]
100930616  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
100930833  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
100930945  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
100930956  FBXO2; F-box only protein 2 [KO:K10099]
100930997  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
100931049  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
100931485  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
100931730  UBE2R2; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
100931875  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
100932266  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
100932413  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
100932565  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
100932655  DDB1; DNA damage-binding protein 1 [KO:K10610]
100932748  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
100933021  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
100933099  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
100933131  [KO:K16060]
100933433  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
100933866  CUL4B; cullin-4B isoform X2 [KO:K10609]
100933931  [KO:K04551]
100934254  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
100934360  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
100934724  CUL2; cullin-2 [KO:K03870]
100934851  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
100934942  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
100934946  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
100935329  FBXW7; F-box/WD repeat-containing protein 7 isoform X2 [KO:K10260]
105750824  [KO:K04694]
111719447  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
111720113  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
111720670  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
116422376  [KO:K10447]
116423512  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
shr03050  Proteasome
KO pathway
ko04120   

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