| 
| Calcium signaling |  
| N00984 | Glutamate | → | GRM5 | → | GNAQ | → | PLCB | → | IP3 | → | ITPR | → | Ca2+ | − | MCU | → | Ca2+(mito) | − | MPTP | → | CYCS | = | APAF1 | → | CASP9 | → | (CASP3,CASP7) |  
| N01151 |  |  |  |  |  |  |  |  | SIGMAR1* | → | ITPR | → | Ca2+ | − | MCU | → | Ca2+(mito) | − | MPTP | → | CYCS |  |  |  |  |  | Ubiquitin-proteasome system |  
| N01029 |  |  |  |  | (Protein+UB) | − | 26S | → | Peptide |  |  | D1 |
 |  |  |  |  |  |  |  |  |  
| N01144 | SOD1* | ⊣ | DERL1 | → | (Protein+UB) | − | 26S | → | Peptide |  
| N01145 |  |  | VCP* | ⊣ | (Protein+UB) | − | 26S | → | Peptide |  
| N01146 |  |  | UBQLN2* | ⊣ | (Protein+UB) | − | 26S | → | Peptide |  |  |  |  |  | Unfolded protein response (UPR) signaling |  
| N01009 |  |  |  |  | EIF2AK3 | → | EIF2S1 | → | ATF4 | ⇒ | DDIT3 |  |  | D1 |
 |  |  |  |  |  |  |  |  |  |  |  
| N01149 | SOD1* | ⊣ | BIP | ⊣ | EIF2AK3 | → | EIF2S1 | → | ATF4 | ⇒ | DDIT3 |  
| N01011 |  |  |  |  | ERN1 | → | XBP1 | ⇒ | DDIT3 |  |  | D1 |
 |  |  |  |  |  |  |  
| N01148 | SOD1* | ⊣ | BIP | ⊣ | ERN1 | → | XBP1 |  
| N01015 |  |  |  |  | ATF6 | ⇒ | (DDIT3,XBP1,HSPA5) |  
| N01150 |  |  | VAPB* | ⊣ | ATF6 |  |  | D1 |
 |  |  |  |  |  |  |  
| N01147 | SOD1* | ⊣ | BIP | ⊣ | ATF6 | ⇒ | DDIT3 |  |  |  |  |  | Autophagy |  
| N01142 | RAB1A | → | (C9orf72+WDR41+SMC.. | → | ULK1_complex |  
| N01143 | RAB1A | ⌿ | (C9orf72*+WDR41+SM.. | ⌿ | (ULK1+RB1CC1+ATG10.. |  |  |  |  |  | Mitophagy |  
| N01137 | PINK1 | → | PRKN | → | (CISD1,CISD2,FAF2,.. | = | (SQSTM1,OPTN,NDP52.. | = | LC3 |  
| N01138 | PINK1 | → | PRKN | → | (CISD1,CISD2,FAF2,.. | ⌿ | OPTN* |  
| N01139 | PINK1 | → | PRKN | → | (CISD1,CISD2,FAF2,.. | ⌿ | SQSTM1* | ⌿ | LC3 |  
| N01140 | TBK1 | → | (SQSTM1,OPTN,NDP52.. | = | LC3-II |  
| N01141 | TBK1* | ⌿ | (SQSTM1,OPTN,NDP52.. | = | LC3-II |  |  |  |  |  | Apoptosis |  
| N00098 | (PMAIP1,BBC3,BAD,B.. | ⊣ | (BCL2,BCL2L1) | ⊣ | (BAX,BAK1) | → | CYCS | = | APAF1 | → | CASP9 | → | (CASP3,CASP7) |  |  | D1 |
 |  |  |  |  |  |  |  |  |  |  |  |  |  
| N01135 | SOD1* | ⊣ | BCL2 | ⊣ | (BAX,BAK1) | → | CYCS | = | APAF1 | → | CASP9 | → | CASP3 |  |  |  |  |  | PI3K signaling |  
| N01163 | NRG | → | ERBB4 | → | PI3K | → | PIP3 | → | AKT |  
| N01164 | NRG | ⌿ | ERBB4* |  |  |  |  |  | Oxidative phosphorylation |  
| N00995 | NADH | − | CxI | → | Q |  
| N01136 | TARDBP* | ⊣ | CxI | → | Q |  |  |  |  |  | Microtubule-based transport |  
| N00976 |  |  | (DCTN+DNAH+DNAI+DN.. | = | (TUBA+TUBB) |  |  | D1 |
 |  |  |  
| N01160 | SOD1* | ⊣ | (DCTN+DNAH+DNAI+DN.. |  
| N01158 |  |  | DCTN1* | ⌿ | (TUBA+TUBB) |  
| N01159 |  |  | (DCTN+DNAH+DNAI+DN.. | ⌿ | TUBA4A* |  |  |  |  |  | Cytoskeletal regulation |  
| N01161 | Actin(monomeric) | = | PFN1 | → | Actin(filamentous) |  
| N01162 | Actin(monomeric) | ⌿ | PFN1* | ⌿ | Actin(filamentous) |  |  |  |  |  | RNA processing |  
| N01154 | mRNA(pre) | − | TARDBP | → | mRNA |  
| N01155 | mRNA(pre) | ⌿ | TARDBP* | ⌿ | mRNA |  
| N01156 | mRNA(pre) | − | FUS | → | mRNA |  
| N01157 | mRNA(pre) | − | FUS* | ⌿ | mRNA |  
| N01152 | (mRNA(nuclear)+CBP.. | − | (NPC+GLE1+DDX19B) | → | (mRNA(cytoplasmic).. |  
| N01153 | (mRNA(nuclear)+CBP.. | ⌿ | (NPC+GLE1*+DDX19B) | ⌿ | (mRNA(cytoplasmic).. |  |