KEGG   PATHWAY: bbis04622
Entry
bbis04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Bison bison bison (American bison)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
bbis04622  RIG-I-like receptor signaling pathway
bbis04622

Organism
Bison bison bison (American bison) [GN:bbis]
Gene
104988320  DDX58; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
105002385  IFIH1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
104985067  ZNFX1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
104986050  MAVS; mitochondrial antiviral-signaling protein isoform X1 [KO:K12648]
104990448  DHX58; probable ATP-dependent RNA helicase DHX58 isoform X1 [KO:K12649] [EC:5.6.2.6]
104996935  TRAF3; TNF receptor-associated factor 3 [KO:K03174]
105002394  TANK; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
104990116  AZI2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
104990827  TBKBP1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
104989798  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
104998823  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
104995732  IRF3; interferon regulatory factor 3 [KO:K05411]
104985722  IRF7; interferon regulatory factor 7 [KO:K09447]
104992606  interferon alpha-A [KO:K05414]
104999951  interferon alpha-H-like [KO:K05414]
104994732  interferon alpha-G [KO:K05414]
104989082  interferon alpha-B-like [KO:K05414]
104995056  interferon alpha-H-like [KO:K05414]
105000964  interferon alpha-2-like [KO:K05414]
104996675  interferon alpha-C [KO:K05414]
104984810  interferon alpha-H-like [KO:K05414]
105003125  interferon alpha-1 [KO:K05414]
104985507  interferon alpha-F [KO:K05414]
104997583  interferon alpha-H [KO:K05414]
105000961  IFNB1; interferon beta [KO:K05415]
105000962  interferon beta-2 [KO:K05415]
105000963  interferon beta-2-like [KO:K05415]
104983695  interferon beta-1 [KO:K05415]
104996149  interferon beta-2-like [KO:K05415]
104998232  interferon omega-1-like [KO:K05440]
104998233  interferon omega-1-like [KO:K05440]
104998647  LOW QUALITY PROTEIN: interferon omega-1-like [KO:K05440]
104987340  interferon omega-1-like [KO:K05440]
104993421  interferon omega-1-like [KO:K05440]
104987600  interferon omega-1-like [KO:K05440]
104987608  interferon omega-1-like [KO:K05440]
104999944  interferon omega-1-like [KO:K05440]
104994723  interferon omega-1-like [KO:K05440]
104994758  interferon omega-1-like [KO:K05440]
104995051  interferon omega-1-like [KO:K05440]
105000985  IFNW1; LOW QUALITY PROTEIN: interferon omega-1 [KO:K05440]
104989106  interferon omega-1-like [KO:K05440]
104989116  interferon omega-1-like [KO:K05440]
104990110  LOW QUALITY PROTEIN: interferon omega-1-like [KO:K05440]
104984800  interferon omega-1-like [KO:K05440]
104990743  interferon omega-1-like [KO:K05440]
104990751  interferon omega-1-like [KO:K05440]
104990914  interferon omega-1-like [KO:K05440]
104990920  interferon omega-1-like [KO:K05440]
105003133  interferon omega-1 [KO:K05440]
105003523  interferon omega-1-like [KO:K05440]
105003530  interferon omega-1-like [KO:K05440]
104985518  interferon omega-1-like [KO:K05440]
104997916  interferon tau-like [KO:K05440]
104998240  IFNE; interferon epsilon [KO:K05442]
104998257  IFNK; interferon kappa [KO:K05441]
104996716  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
104986928  FADD; LOW QUALITY PROTEIN: FAS-associated death domain protein [KO:K02373]
105001321  LOW QUALITY PROTEIN: receptor-interacting serine/threonine-protein kinase 1-like [KO:K02861] [EC:2.7.11.1]
105003655  CASP8; caspase-8 [KO:K04398] [EC:3.4.22.61]
105002719  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
104993223  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
104995325  NFKBIB; NF-kappa-B inhibitor beta [KO:K02581]
104985237  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
104994637  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
104987029  RELA; transcription factor p65 [KO:K04735]
104982944  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
104984790  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
104982477  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
104998375  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
104998999  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
104992939  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
104981526  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
104981967  MAPK12; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
104981977  MAPK11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
104994938  MAPK14; mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
104994939  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
104987314  C-X-C motif chemokine 15-like [KO:K10030]
104987320  interleukin-8 [KO:K10030]
104983770  TNF; tumor necrosis factor isoform X1 [KO:K03156]
104988502  IL12A; interleukin-12 subunit alpha [KO:K05406]
104999734  IL12B; interleukin-12 subunit beta [KO:K05425]
104987293  CXCL10; C-X-C motif chemokine 10 [KO:K12671]
104987431  ADAR; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
104997970  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
104999603  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
104980321  RNF125; E3 ubiquitin-protein ligase RNF125 [KO:K12170] [EC:2.3.2.27]
104995950  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
105000685  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
105004469  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
104981391  NLRX1; NLR family member X1 [KO:K12653]
104996188  TMEM173; stimulator of interferon genes protein [KO:K12654]
105002112  OTUD5; LOW QUALITY PROTEIN: OTU domain-containing protein 5 [KO:K12655] [EC:3.4.19.12]
104981579  SIKE1; suppressor of IKBKE 1 [KO:K12656]
104984096  ATP-dependent RNA helicase DDX3X-like [KO:K11594] [EC:5.6.2.7]
104979847  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
104983607  DAK; bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing) isoform X1 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
bbis04010  MAPK signaling pathway
bbis04120  Ubiquitin mediated proteolysis
bbis04210  Apoptosis
bbis04630  JAK-STAT signaling pathway
KO pathway
ko04622   
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