Entry
Name
Endocytosis - Manis javanica (Malayan pangolin)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Manis javanica (Malayan pangolin) [GN:
mjv ]
Gene
108405576 ZFYVE16; LOW QUALITY PROTEIN: zinc finger FYVE domain-containing protein 16 [KO:K04679 ]
108395399 ZFYVE9; zinc finger FYVE domain-containing protein 9 isoform X1 [KO:K04679 ]
108400736 SMAD2; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500 ]
108404778 SMAD3; mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605 ]
108400932 SH3KBP1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
108399613 BIN1; myc box-dependent-interacting protein 1 isoform X1 [KO:K12562 ]
108397498 EPS15; epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
108409395 EPS15L1; epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
108384148 LDLRAP1; low density lipoprotein receptor adapter protein 1 isoform X1 [KO:K12474 ]
108392259 WASL; neural Wiskott-Aldrich syndrome protein isoform X1 [KO:K23612 ]
108403142 ARPC1A; actin-related protein 2/3 complex subunit 1A isoform X2 [KO:K05757 ]
108387363 ARPC2; actin-related protein 2/3 complex subunit 2 isoform X1 [KO:K05758 ]
108394598 ARPC5L; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
108395364 WIPF1; WAS/WASL-interacting protein family member 1 isoform X1 [KO:K19475 ]
108392193 WIPF2; WAS/WASL-interacting protein family member 2 isoform X1 [KO:K19475 ]
108388701 WIPF3; WAS/WASL-interacting protein family member 3 isoform X1 [KO:K19475 ]
108397886 LOW QUALITY PROTEIN: heat shock 70 kDa protein 1-like [KO:K03283 ]
108387427 HSPA6; LOW QUALITY PROTEIN: heat shock 70 kDa protein 6 [KO:K03283 ]
108388559 DNAJC6; putative tyrosine-protein phosphatase auxilin isoform X1 [KO:K09526 ]
108384336 CAPZA3; LOW QUALITY PROTEIN: F-actin-capping protein subunit alpha-3 [KO:K10364 ]
108400548 VPS29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
108395948 VPS26B; vacuolar protein sorting-associated protein 26B isoform X1 [KO:K18466 ]
108389800 VPS26A; vacuolar protein sorting-associated protein 26A isoform X1 [KO:K18466 ]
108402113 VPS35; vacuolar protein sorting-associated protein 35 isoform X1 [KO:K18468 ]
108409867 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
108404506 STAM2; signal transducing adapter molecule 2 isoform X1 [KO:K04705 ]
108408274 VPS37B; vacuolar protein sorting-associated protein 37B isoform X1 [KO:K12185 ]
108392377 VPS37C; vacuolar protein sorting-associated protein 37C isoform X1 [KO:K12185 ]
108398326 VPS37D; vacuolar protein sorting-associated protein 37D isoform X1 [KO:K12185 ]
108385991 VPS36; vacuolar protein-sorting-associated protein 36 isoform X1 [KO:K12190 ]
108386078 VPS25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
108398127 CHMP6; charged multivesicular body protein 6 isoform X1 [KO:K12195 ]
108392293 CHMP4A; LOW QUALITY PROTEIN: charged multivesicular body protein 4a [KO:K12194 ]
108408240 CHMP2A; charged multivesicular body protein 2a isoform X1 [KO:K12191 ]
108393210 CHMP7; charged multivesicular body protein 7 isoform X1 [KO:K15053 ]
108405296 VPS4A; vacuolar protein sorting-associated protein 4A isoform X1 [KO:K12196 ]
108385220 VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196 ]
108390725 VTA1; vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199 ]
108393557 CHMP5; charged multivesicular body protein 5 isoform X2 [KO:K12198 ]
108389999 programmed cell death 6-interacting protein isoform X1 [KO:K12200 ]
108409361 IGF2R; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
108392662 IL2RB; interleukin-2 receptor subunit beta isoform X1 [KO:K05069 ]
108388563 class I histocompatibility antigen, Gogo-B*0201 alpha chain-like isoform X1 [KO:K06751 ]
108390694 H-2 class I histocompatibility antigen, Q10 alpha chain-like isoform X1 [KO:K06751 ]
108391351 patr class I histocompatibility antigen, A-126 alpha chain-like isoform X2 [KO:K06751 ]
108399725 HLA class I histocompatibility antigen, alpha chain G-like [KO:K06751 ]
108384851 RABEP1; rab GTPase-binding effector protein 1 isoform X1 [KO:K12480 ]
108401739 RUFY2; LOW QUALITY PROTEIN: RUN and FYVE domain-containing protein 2 [KO:K12482 ]
108404168 VPS45; vacuolar protein sorting-associated protein 45 isoform X1 [KO:K12479 ]
108385488 RAB11FIP2; LOW QUALITY PROTEIN: rab11 family-interacting protein 2 [KO:K12484 ]
108405723 RAB11FIP1; rab11 family-interacting protein 1 isoform X1 [KO:K12484 ]
108387729 RAB11FIP5; rab11 family-interacting protein 5 isoform X1 [KO:K12484 ]
108397811 RAB11FIP4; rab11 family-interacting protein 4 isoform X3 [KO:K12485 ]
118973716 PARD6A; partitioning defective 6 homolog alpha isoform X1 [KO:K06093 ]
108391531 CDC42; cell division control protein 42 homolog isoform X1 [KO:K04393 ]
108404566 SMAP2; stromal membrane-associated protein 2 isoform X1 [KO:K12486 ]
108396177 SMAP1; stromal membrane-associated protein 1 isoform X1 [KO:K12486 ]
108407360 ASAP1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
108391095 ASAP3; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12488 ]
108400835 ASAP2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488 ]
108406487 ACAP1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12489 ]
108408986 ACAP3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X4 [KO:K12489 ]
108399252 ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489 ]
108390528 ARAP1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439 ]
108398317 ARAP2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K18440 ]
108405531 ARAP3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490 ]
108391847 AGAP3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12491 ]
108395395 AGAP1; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12491 ]
108387229 AGAP2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X3 [KO:K17848 ]
108394064 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
108408807 ARFGAP2; ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493 ]
108384700 ARFGAP3; ADP-ribosylation factor GTPase-activating protein 3 [KO:K12493 ]
108394743 PSD2; PH and SEC7 domain-containing protein 2 isoform X1 [KO:K12494 ]
108398606 PSD3; PH and SEC7 domain-containing protein 3 isoform X1 [KO:K12494 ]
108393077 IQSEC1; IQ motif and SEC7 domain-containing protein 1 isoform X13 [KO:K12495 ]
108399070 IQSEC3; IQ motif and SEC7 domain-containing protein 3 isoform X2 [KO:K12495 ]
108393535 ARFGEF1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 [KO:K18442 ]
108383619 ARFGEF2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 isoform X1 [KO:K18442 ]
108405675 GBF1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X6 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
mjv04060 Cytokine-cytokine receptor interaction
mjv04070 Phosphatidylinositol signaling system
mjv04130 SNARE interactions in vesicular transport
KO pathway
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