KEGG   PATHWAY: ptr04622
Entry
ptr04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Pan troglodytes (chimpanzee)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
ptr04622  RIG-I-like receptor signaling pathway
ptr04622

Organism
Pan troglodytes (chimpanzee) [GN:ptr]
Gene
465035  RIGI; antiviral innate immune response receptor RIG-I [KO:K12646] [EC:5.6.2.6]
459692  IFIH1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
458321  ZNFX1; NFX1-type zinc finger-containing protein 1 isoform X1 [KO:K27391]
470026  MAVS; mitochondrial antiviral-signaling protein isoform X1 [KO:K12648]
742679  DHX58; ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
453178  TRAF3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
459685  TANK; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
460239  AZI2; 5-azacytidine-induced protein 2 isoform X3 [KO:K12651]
455177  TBKBP1; TANK-binding kinase 1-binding protein 1 isoform X1 [KO:K12652]
100610002  NF-kappa-B essential modulator isoform X1 [KO:K07210]
100609537  IKBKG; NF-kappa-B essential modulator isoform X1 [KO:K07210]
452047  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
742813  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
747565  IRF3; interferon regulatory factor 3 isoform X1 [KO:K05411]
450927  IRF7; interferon regulatory factor 7 isoform X1 [KO:K09447]
473185  IFNA21; interferon alpha-21 [KO:K05414]
473193  IFNA14; interferon alpha-14 [KO:K05414]
473196  IFNA6; interferon alpha-6 [KO:K05414]
473198  IFNA2; interferon alpha-2 [KO:K05414]
473199  IFNA8; interferon alpha-8 [KO:K05414]
741660  interferon alpha-17 [KO:K05414]
473195  IFNA5; interferon alpha-5 [KO:K05414]
741747  interferon alpha-7 [KO:K05414]
742651  interferon alpha-1/13 [KO:K05414]
741978  interferon alpha-16 [KO:K05414]
744748  interferon alpha-17 [KO:K05414]
473191  interferon alpha-17 [KO:K05414]
473197  interferon alpha-1/13 [KO:K05414]
741797  interferon alpha-4 [KO:K05414]
473183  IFNB1; interferon beta [KO:K05415]
473184  IFNW1; interferon omega-1 [KO:K05440]
473203  IFNE; interferon epsilon [KO:K05442]
473120  IFNK; interferon kappa [KO:K05441]
454154  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein isoform X2 [KO:K03171]
451389  FADD; FAS-associated death domain protein [KO:K02373]
462397  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
746477  CASP8; caspase-8 isoform X9 [KO:K04398] [EC:3.4.22.61]
459873  CASP10; caspase-10 isoform X1 [KO:K04400] [EC:3.4.22.63]
450673  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
472749  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
456014  NFKBIB; NF-kappa-B inhibitor beta isoform X5 [KO:K02581]
467426  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
461406  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X3 [KO:K02580]
466665  RELA; transcription factor P65 [KO:K04735]
464876  TRAF2; TNF receptor-associated factor 2 isoform X3 [KO:K03173] [EC:2.3.2.27]
462888  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
451702  TRAF6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
471543  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
450445  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
462336  MAPK9; mitogen-activated protein kinase 9 isoform X2 [KO:K04440] [EC:2.7.11.24]
461358  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
450161  MAPK14; mitogen-activated protein kinase 14 [KO:K04441] [EC:2.7.11.24]
462644  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
747077  MAPK12; mitogen-activated protein kinase 12 isoform X1 [KO:K04441] [EC:2.7.11.24]
104003820  MAPK11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
471205  CXCL8; interleukin-8 [KO:K10030]
494186  TNF; tumor necrosis factor [KO:K03156]
460816  IL12A; interleukin-12 subunit alpha isoform X1 [KO:K05406]
471723  IL12B; interleukin-12 subunit beta [KO:K05425]
461242  CXCL10; C-X-C motif chemokine 10 [KO:K12671]
457349  ADAR; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
455146  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X3 [KO:K10652] [EC:2.3.2.27]
465165  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
743809  RNF125; E3 ubiquitin-protein ligase RNF125 isoform X2 [KO:K12170] [EC:2.3.2.27]
100609237  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
462905  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
462011  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
451605  NLRX1; NLR family member X1 isoform X1 [KO:K12653]
462107  STING1; stimulator of interferon genes protein isoform X1 [KO:K12654]
457146  SIKE1; suppressor of IKBKE 1 isoform X1 [KO:K12656]
742915  DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
745021  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 isoform X2 [KO:K09578] [EC:5.2.1.8]
466626  TKFC; triokinase/FMN cyclase isoform X3 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
ptr04010  MAPK signaling pathway
ptr04120  Ubiquitin mediated proteolysis
ptr04210  Apoptosis
ptr04630  JAK-STAT signaling pathway
KO pathway
ko04622   
LinkDB

DBGET integrated database retrieval system