KEGG   PATHWAY: xhe04622
Entry
xhe04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Xiphophorus hellerii (green swordtail)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
xhe04622  RIG-I-like receptor signaling pathway
xhe04622

Organism
Xiphophorus hellerii (green swordtail) [GN:xhe]
Gene
116723180  ifih1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
116710656  LOW QUALITY PROTEIN: NFX1-type zinc finger-containing protein 1-like [KO:K27391]
116708603  mavs; mitochondrial antiviral-signaling protein [KO:K12648]
116735233  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
116709290  traf3; TNF receptor-associated factor 3 [KO:K03174]
116723546  tank; TRAF family member-associated NF-kappa-B activator [KO:K12650]
116716967  azi2; 5-azacytidine-induced protein 2 [KO:K12651]
116727166  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
116724200  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
116737134  tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
116710100  inhibitor of nuclear factor kappa-B kinase subunit epsilon-like [KO:K07211] [EC:2.7.11.10]
116727668  interferon regulatory factor 3-like isoform X1 [KO:K05411]
116711873  irf7; interferon regulatory factor 7 isoform X1 [KO:K09447]
116727478  ifnk; interferon kappa [KO:K05414]
116727593  interferon a3-like [KO:K05414]
116727594  interferon a3-like [KO:K05414]
116735419  interferon a3-like [KO:K05414]
116719186  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
116719102  fadd; FAS-associated death domain protein [KO:K02373]
116721949  ripk1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
116721891  caspase-8-like [KO:K04398] [EC:3.4.22.61]
116722140  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
116722737  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
116727210  inhibitor of nuclear factor kappa-B kinase subunit alpha-like isoform X1 [KO:K04467] [EC:2.7.11.10]
116713354  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
116729844  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
116734358  NF-kappa-B inhibitor alpha-like [KO:K04734]
116708961  nfkbia; NF-kappa-B inhibitor alpha [KO:K04734]
116714586  nfkb1; LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit [KO:K02580]
116732698  transcription factor p65-like [KO:K04735]
116723863  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
116730282  TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]
116724978  TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]
116733629  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
116709106  mitogen-activated protein kinase kinase kinase 7-like isoform X1 [KO:K04427] [EC:2.7.11.25]
116718296  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
116712736  mitogen-activated protein kinase 8-like isoform X1 [KO:K04440] [EC:2.7.11.24]
116726919  mapk8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
116714406  mitogen-activated protein kinase 9-like isoform X1 [KO:K04440] [EC:2.7.11.24]
116714445  mitogen-activated protein kinase 9-like isoform X1 [KO:K04440] [EC:2.7.11.24]
116723818  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
116726572  mitogen-activated protein kinase 14A-like [KO:K04441] [EC:2.7.11.24]
116720481  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
116734543  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
116736395  mitogen-activated protein kinase 12-like isoform X1 [KO:K04441] [EC:2.7.11.24]
116736857  mitogen-activated protein kinase 11-like [KO:K04441] [EC:2.7.11.24]
116724360  mitogen-activated protein kinase 13-like [KO:K04441] [EC:2.7.11.24]
116710497  mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
116719430  interleukin-8-like [KO:K10030]
116733365  permeability factor 2-like [KO:K10030]
116720852  C-X-C motif chemokine 2-like isoform X1 [KO:K10030]
116731887  tumor necrosis factor-like isoform X1 [KO:K03156]
116721905  uncharacterized protein LOC116721905 [KO:K05406]
116737328  interleukin-12 subunit alpha-like [KO:K05406]
116714324  interleukin-12 subunit beta-like [KO:K05425]
116728504  interleukin-12 subunit beta-like [KO:K05425]
116729424  interleukin-12 subunit beta-like [KO:K05425]
116717193  adar; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
116725987  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
116711811  LOW QUALITY PROTEIN: E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
116719612  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
116733370  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
116720162  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
116720301  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
116721376  tripartite motif-containing protein 16-like [KO:K10652] [EC:2.3.2.27]
116736242  E3 ubiquitin-protein ligase TRIM39-like [KO:K10652] [EC:2.3.2.27]
116708121  tripartite motif-containing protein 16-like isoform X1 [KO:K10652] [EC:2.3.2.27]
116711234  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
116726257  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
116733205  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
116718492  cyld; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
116717067  atg5; autophagy protein 5 [KO:K08339]
116714941  atg12; ubiquitin-like protein ATG12 [KO:K08336]
116708035  nlrx1; NLR family member X1 [KO:K12653]
116714932  sting1; stimulator of interferon genes protein [KO:K12654]
116719053  otud5; OTU domain-containing protein 5 isoform X1 [KO:K12655] [EC:3.4.19.12]
116723363  sike1; suppressor of IKBKE 1 [KO:K12656]
116715530  ATP-dependent RNA helicase DDX3X-like isoform X1 [KO:K11594] [EC:5.6.2.7]
116722605  ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
116719418  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
116733360  tkfc; triokinase/FMN cyclase isoform X1 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
xhe04010  MAPK signaling pathway
xhe04120  Ubiquitin mediated proteolysis
xhe04210  Apoptosis
KO pathway
ko04622   
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