KEGG   PATHWAY: amex04120
Entry
amex04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Astyanax mexicanus (Mexican tetra)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
amex04120  Ubiquitin mediated proteolysis
amex04120

Other DBs
GO: 0016567
Organism
Astyanax mexicanus (Mexican tetra) [GN:amex]
Gene
103021325  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
103021413  anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
103021436  ube2al; ubiquitin conjugating enzyme E2 A, like [KO:K10573] [EC:2.3.2.23]
103021524  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
103021554  anapc11; anaphase-promoting complex subunit 11 isoform X2 [KO:K03358]
103021775  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
103021786  rhobtb4; rho related BTB domain containing 4 isoform X2 [KO:K07868]
103021957  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
103022206  itchb; itchy E3 ubiquitin protein ligase b [KO:K05632] [EC:2.3.2.26]
103022237  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
103022493  rhobtb1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
103022743  det1; DET1 homolog [KO:K10571]
103022781  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
103022865  herc2; E3 ubiquitin-protein ligase HERC2 isoform X2 [KO:K10595] [EC:2.3.2.26]
103023056  ube2e3; ubiquitin-conjugating enzyme E2 E3 isoform X3 [KO:K20217] [EC:2.3.2.23]
103023154  [KO:K10594] [EC:2.3.2.26]
103023394  ube2g1b; ubiquitin-conjugating enzyme E2G 1b [KO:K10575] [EC:2.3.2.23]
103023403  [KO:K03869]
103023552  [KO:K10605] [EC:2.3.2.27]
103023842  [KO:K06689] [EC:2.3.2.23]
103024049  ube2wa; probable ubiquitin-conjugating enzyme E2 W-A [KO:K10688] [EC:2.3.2.23 2.3.2.25]
103024125  ube2l3a; ubiquitin-conjugating enzyme E2 L3a [KO:K04552] [EC:2.3.2.23]
103024126  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
103024283  cul3b; cullin-3b [KO:K03869]
103024424  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
103024488  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
103024540  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
103024543  fzr1b; fizzy-related protein homolog [KO:K03364]
103024666  fancl; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
103024806  socs3b; suppressor of cytokine signaling 3b [KO:K04696]
103024983  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
103025132  [KO:K20217] [EC:2.3.2.23]
103025173  pias1b; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
103025443  smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
103025481  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
103025647  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
103025754  ube2ia; SUMO-conjugating enzyme UBC9-B [KO:K10577]
103025901  mid1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
103025954  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
103026215  cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
103026553  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
103026563  rnf7; RING-box protein 2 [KO:K10611]
103026613  anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
103026734  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
103026906  pias1a; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
103026940  cul1b; cullin-1b [KO:K03347]
103027089  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
103027105  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
103027361  ube2e2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
103027541  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
103027775  [KO:K10687] [EC:2.3.2.34]
103027813  prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
103027883  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
103027943  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
103028096  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
103028238  scarb1; scavenger receptor class B member 1 isoform X1 [KO:K04551]
103028293  ube2q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
103028966  fbxw11a; F-box and WD repeat domain-containing 11-A isoform X1 [KO:K03362]
103029138  [KO:K10577]
103029158  ube2d1a; ubiquitin-conjugating enzyme E2 D1a isoform X3 [KO:K06689] [EC:2.3.2.23]
103029337  fbxw11b; F-box and WD repeat domain-containing 11-B [KO:K03362]
103029486  [KO:K10573] [EC:2.3.2.23]
103029683  elocb; elongin C paralog b [KO:K03872]
103029797  socs1a; suppressor of cytokine signaling 1a [KO:K04694]
103029880  vhll; von Hippel-Lindau-like protein [KO:K03871]
103029965  ube2d1b; ubiquitin-conjugating enzyme E2 D1b [KO:K06689] [EC:2.3.2.23]
103030064  ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
103030181  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X3 [KO:K10593] [EC:2.3.2.26]
103030198  pias4b; E3 SUMO-protein ligase PIAS4b [KO:K16065] [EC:2.3.2.27]
103030439  ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
103030683  ubb; polyubiquitin-B isoform X1 [KO:K08770]
103030906  [KO:K08285] [EC:2.3.2.27]
103031170  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
103031344  [KO:K03873]
103031438  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
103032022  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
103032080  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
103032112  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
103032289  si:rp71-68n21.9; kelch-like protein 9 [KO:K10447]
103032398  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
103032411  cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
103032588  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
103032591  itcha; itchy E3 ubiquitin protein ligase a [KO:K05632] [EC:2.3.2.26]
103032650  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
103032672  cul5a; cullin-5a [KO:K10612]
103032970  anapc5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
103033338  prpf19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
103034207  ube2wb; probable ubiquitin-conjugating enzyme E2 W-B [KO:K10688] [EC:2.3.2.23 2.3.2.25]
103034624  [KO:K07868]
103034711  cblb; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
103035280  ube2d3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
103035351  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
103035357  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
103035513  ube2h; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
103035712  cdc27; cell division cycle protein 27 homolog [KO:K03350]
103035801  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
103035844  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
103036005  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
103036171  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
103036503  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
103036770  elob; elongin-B [KO:K03873]
103036806  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
103036824  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
103036828  [KO:K10602] [EC:2.3.2.27]
103036970  birc7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
103037135  socs1b; suppressor of cytokine signaling 1b [KO:K04694]
103037299  ddb1; DNA damage-binding protein 1 isoform X1 [KO:K10610]
103037342  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
103037787  fbxw8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
103037921  [KO:K04725] [EC:2.3.2.27]
103038018  aire; autoimmune regulator [KO:K10603]
103038056  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
103038462  fbxo4; F-box only protein 4 [KO:K10291]
103039064  mdm2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
103039491  fzr1a; fizzy/cell division cycle 20 related 1a [KO:K03364]
103039786  ube2d2l; ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like isoform X1 [KO:K06689] [EC:2.3.2.23]
103039986  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
103040182  [KO:K05633] [EC:2.3.2.26]
103040234  keap1a; kelch-like ECH-associated protein 1A [KO:K10456]
103040496  cul2; cullin-2 [KO:K03870]
103040499  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
103040575  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
103041312  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X2 [KO:K10608] [EC:2.3.2.27]
103041768  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
103042517  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X2 [KO:K04416] [EC:2.7.11.25]
103042789  ube3a; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
103042876  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
103042889  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
103043130  ubox5; RING finger protein 37 isoform X1 [KO:K10600]
103043332  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
103043782  cdc23; cell division cycle protein 23 homolog [KO:K03355]
103044043  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
103044625  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
103044630  nedd4a; E3 ubiquitin-protein ligase NEDD4a isoform X1 [KO:K10591] [EC:2.3.2.26]
103044783  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
103044899  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
103045132  cdc16; cell division cycle protein 16 homolog [KO:K03353]
103045265  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
103045360  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
103045526  skp1; S-phase kinase-associated protein 1 [KO:K03094]
103045603  ube2j2; ubiquitin-conjugating enzyme E2 J2 isoform X2 [KO:K04554] [EC:2.3.2.23]
103045813  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
103046280  [KO:K04678] [EC:2.3.2.26]
103046443  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X4 [KO:K10592] [EC:2.3.2.26]
103046720  cdc20; cell division cycle protein 20 homolog [KO:K03363]
103046885  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
103047033  [KO:K03364]
103047072  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
103047157  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
103047278  skp2; S-phase kinase-associated protein 2 [KO:K03875]
103047299  [KO:K10614] [EC:2.3.2.26]
103047305  cul4a; cullin-4A [KO:K10609]
103047409  cul4b; cullin-4B [KO:K10609]
103047591  fbxo2; F-box only protein 2 isoform X1 [KO:K10099]
103047886  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X7 [KO:K13305] [EC:2.3.2.26]
107197156  [KO:K03868] [EC:2.3.2.32]
111188808  ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
111191236  [KO:K02207] [EC:2.3.2.23]
111191280  ube2e1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
111191490  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
111194478  cul1a; cullin-1a isoform X1 [KO:K03347]
111196222  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
125781274  mgrn1a; probable E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
125782274  cdc34a; cell division cycle 34 homolog (S. cerevisiae) a [KO:K02207] [EC:2.3.2.23]
125782280  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
125789959  [KO:K10687] [EC:2.3.2.34]
125799420  [KO:K10577]
125799446  [KO:K03868] [EC:2.3.2.32]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
amex03050  Proteasome
KO pathway
ko04120   

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