KEGG   PATHWAY: caty04622
Entry
caty04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Cercocebus atys (sooty mangabey)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
caty04622  RIG-I-like receptor signaling pathway
caty04622

Organism
Cercocebus atys (sooty mangabey) [GN:caty]
Gene
105571369  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
105572297  ZNFX1; NFX1-type zinc finger-containing protein 1 isoform X1 [KO:K27391]
105572443  ISG15; ubiquitin-like protein ISG15 isoform X1 [KO:K12159]
105573119  OTUD5; OTU domain-containing protein 5 isoform X1 [KO:K12655] [EC:3.4.19.12]
105573465  TNF; tumor necrosis factor [KO:K03156]
105573773  IKBKG; NF-kappa-B essential modulator isoform X1 [KO:K07210]
105576040  TANK; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
105576049  IFIH1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
105576636  IKBKE; LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
105576775  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
105576857  CXCL10; C-X-C motif chemokine 10 [KO:K12671]
105577208  IRF7; interferon regulatory factor 7 isoform X1 [KO:K09447]
105577297  FADD; FAS-associated death domain protein [KO:K02373]
105577432  RELA; transcription factor p65 isoform X1 [KO:K04735]
105577598  TKFC; bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing) [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
105578262  AZI2; 5-azacytidine-induced protein 2 [KO:K12651]
105579512  TBKBP1; TANK-binding kinase 1-binding protein 1 isoform X1 [KO:K12652]
105579660  DHX58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
105580035  CASP8; caspase-8 [KO:K04398] [EC:3.4.22.61]
105580202  CASP10; caspase-10 [KO:K04400] [EC:3.4.22.63]
105580591  TRAF2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
105581574  IL12B; interleukin-12 subunit beta [KO:K05425]
105581830  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
105582130  MAVS; mitochondrial antiviral-signaling protein [KO:K12648]
105582505  NLRX1; NLR family member X1 isoform X1 [KO:K12653]
105583291  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
105584001  IFNW1; interferon omega-1 [KO:K05440]
105584002  IFNB1; interferon beta [KO:K05415]
105586809  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
105586882  MAPK11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
105586884  MAPK12; mitogen-activated protein kinase 12 isoform X1 [KO:K04441] [EC:2.7.11.24]
105587262  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein isoform X1 [KO:K03171]
105588862  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
105588916  ATG5; autophagy protein 5 [KO:K08339]
105589048  MAP3K7; mitogen-activated protein kinase kinase kinase 7 [KO:K04427] [EC:2.7.11.25]
105589068  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
105590097  DDX58; probable ATP-dependent RNA helicase DDX58 isoform X1 [KO:K12646] [EC:5.6.2.6]
105590417  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
105590662  ATG12; ubiquitin-like protein ATG12 isoform X1 [KO:K08336]
105591293  IFNK; interferon kappa [KO:K05441]
105591324  IFNE; interferon epsilon [KO:K05442]
105591326  [KO:K05414]
105591327  IFNA8; interferon alpha-8 [KO:K05414]
105591328  IFNA2; interferon alpha-2 [KO:K05414]
105591330  [KO:K05414]
105591332  [KO:K05414]
105591336  [KO:K05414]
105591337  [KO:K05414]
105591338  [KO:K05414]
105591436  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
105592607  RNF125; E3 ubiquitin-protein ligase RNF125 isoform X1 [KO:K12170] [EC:2.3.2.27]
105592690  MAPK13; mitogen-activated protein kinase 13 isoform X1 [KO:K04441] [EC:2.7.11.24]
105592727  MAPK14; mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
105593498  ADAR; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
105594400  NFKBIB; NF-kappa-B inhibitor beta isoform X1 [KO:K02581]
105595300  IRF3; interferon regulatory factor 3 isoform X1 [KO:K05411]
105595625  DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
105595759  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
105596231  CXCL8; interleukin-8 [KO:K10030]
105596343  SIKE1; suppressor of IKBKE 1 isoform X1 [KO:K12656]
105596428  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
105596732  TRAF3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
105598171  IL12A; interleukin-12 subunit alpha [KO:K05406]
105599635  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
105599864  TMEM173; stimulator of interferon genes protein isoform X1 [KO:K12654]
105600541  TBK1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
105601426  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
caty04010  MAPK signaling pathway
caty04120  Ubiquitin mediated proteolysis
caty04210  Apoptosis
caty04630  JAK-STAT signaling pathway
KO pathway
ko04622   

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