KEGG   PATHWAY: cave03420
Entry
cave03420                   Pathway                                
Name
Nucleotide excision repair - Corylus avellana (European hazelnut)
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
cave03420  Nucleotide excision repair
cave03420

Other DBs
GO: 0006289
Organism
Corylus avellana (European hazelnut) [GN:cave]
Gene
132161621  [KO:K10740]
132161775  [KO:K03014]
132161854  [KO:K10756]
132162325  [KO:K10756]
132163250  [KO:K02324] [EC:2.7.7.7]
132163425  [KO:K10754]
132163569  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
132163747  [KO:K04802]
132164086  [KO:K04802]
132164137  [KO:K02326] [EC:2.7.7.7]
132164764  [KO:K10140]
132165329  [KO:K03016]
132165585  [KO:K07466]
132165668  [KO:K10841]
132165772  [KO:K02327] [EC:2.7.7.7]
132166128  [KO:K03012]
132166206  [KO:K03868] [EC:2.3.2.32]
132166306  [KO:K03868] [EC:2.3.2.32]
132166320  [KO:K03008]
132167061  [KO:K03505]
132167142  [KO:K03008]
132167967  [KO:K03016]
132168752  [KO:K10844] [EC:5.6.2.3]
132169858  [KO:K03144]
132170216  [KO:K10610]
132170272  [KO:K10609]
132170274  [KO:K10849]
132171147  [KO:K03012]
132171373  [KO:K03144]
132171374  [KO:K03144]
132171741  [KO:K06634]
132172137  [KO:K03010] [EC:2.7.7.6]
132172227  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
132172426  [KO:K03006] [EC:2.7.7.6]
132173512  [KO:K02335] [EC:2.7.7.7]
132173840  [KO:K07466]
132174482  [KO:K03014]
132174551  [KO:K02335] [EC:2.7.7.7]
132174788  [KO:K03141]
132174988  [KO:K03142]
132175092  [KO:K10755]
132175142  [KO:K03504]
132175262  [KO:K07466]
132175341  [KO:K10740]
132175385  [KO:K10740]
132175410  [KO:K10740]
132175509  [KO:K03013]
132175721  [KO:K10843] [EC:5.6.2.4]
132176135  [KO:K10848] [EC:3.1.-.-]
132176208  [KO:K03013]
132179803  [KO:K03011]
132180637  [KO:K10839]
132180816  [KO:K10846]
132181224  [KO:K03014]
132181308  [KO:K10838]
132181323  [KO:K03014]
132182542  [KO:K03143]
132184134  [KO:K10839]
132184577  [KO:K10842]
132184956  [KO:K10756]
132185830  [KO:K10755]
132185936  [KO:K02325] [EC:2.7.7.7]
132186564  [KO:K04802]
132186571  [KO:K04802]
132186898  [KO:K23720]
132187438  [KO:K03015]
132187717  [KO:K03013]
132187731  [KO:K10839]
132188661  [KO:K03014]
132189834  [KO:K10739]
132190086  [KO:K03017]
132190380  [KO:K10570]
132190458  [KO:K10739]
132191705  [KO:K03013]
132191920  [KO:K02328]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
cave03020  RNA polymerase
cave04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

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