KEGG   PATHWAY: mcal04623
Entry
mcal04623                   Pathway                                
Name
Cytosolic DNA-sensing pathway - Mus caroli (Ryukyu mouse)
Description
Specific families of pattern recognition receptors are responsible for detecting foreign DNA from invading microbes or host cells and generating innate immune responses. DAI is the first identified sensor of cytosolic DNA which activates the IRF and NF-{kappa}B transcription factors, leading to production of type I interferon and other cytokines. The second type of cytoplasmic DNA sensor is AIM2. Upon sensing DNA, AIM2 triggers the assembly of the inflammasome, culminating in interleukin maturation. In addition to these receptors, there is a mechanism to sense foreign DNA, with the host RNA polymerase III converting the DNA into RNA for recognition by the RNA sensor RIG-I. These pathways provide various means to alert the cell.
Class
Organismal Systems; Immune system
Pathway map
mcal04623  Cytosolic DNA-sensing pathway
mcal04623

Organism
Mus caroli (Ryukyu mouse) [GN:mcal]
Gene
110309230  Polr3a; DNA-directed RNA polymerase III subunit RPC1 [KO:K03018] [EC:2.7.7.6]
110303492  Polr3b; DNA-directed RNA polymerase III subunit RPC2 [KO:K03021] [EC:2.7.7.6]
110290866  Polr3c; DNA-directed RNA polymerase III subunit RPC3 isoform X1 [KO:K03023]
110309294  Polr3d; DNA-directed RNA polymerase III subunit RPC4 [KO:K03026]
110297198  Polr3e; DNA-directed RNA polymerase III subunit RPC5 [KO:K14721]
110312726  Polr1c; DNA-directed RNA polymerases I and III subunit RPAC1 [KO:K03027]
110289394  Polr3k; DNA-directed RNA polymerase III subunit RPC10 [KO:K03019]
110293940  Polr1d; DNA-directed RNA polymerases I and III subunit RPAC2 [KO:K03020]
110310558  Polr3h; DNA-directed RNA polymerase III subunit RPC8 [KO:K03022]
110291406  Polr3gl; DNA-directed RNA polymerase III subunit RPC7-like isoform X1 [KO:K03024]
110308352  Polr3g; DNA-directed RNA polymerase III subunit RPC7 [KO:K03024]
110287283  Polr3f; DNA-directed RNA polymerase III subunit RPC6 [KO:K03025]
110303180  Polr2e; DNA-directed RNA polymerases I, II, and III subunit RPABC1 [KO:K03013]
110310252  Polr2f; DNA-directed RNA polymerases I, II, and III subunit RPABC2 [KO:K03014]
110311143  Polr2h; DNA-directed RNA polymerases I, II, and III subunit RPABC3 [KO:K03016]
110294999  DNA-directed RNA polymerases I, II, and III subunit RPABC4-like [KO:K03009]
110302703  DNA-directed RNA polymerases I, II, and III subunit RPABC4 [KO:K03009]
110310846  Polr2k; DNA-directed RNA polymerases I, II, and III subunit RPABC4 isoform X1 [KO:K03009]
110297261  Polr2l; DNA-directed RNA polymerases I, II, and III subunit RPABC5 [KO:K03007]
110292323  Ddx58; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
110307081  Mavs; mitochondrial antiviral-signaling protein [KO:K12648]
110291231  Nfkb1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
110285703  Rela; transcription factor p65 [KO:K04735]
110295330  Il6; interleukin-6 [KO:K05405]
110296125  Pcbp1; poly(rC)-binding protein 1 [KO:K12889]
110305819  G3bp1; ras GTPase-activating protein-binding protein 1 [KO:K17265] [EC:5.6.2.5 5.6.2.3]
110290128  Zcchc3; zinc finger CCHC domain-containing protein 3 [KO:K27162]
110302572  Cgas; cyclic GMP-AMP synthase [KO:K17834] [EC:2.7.7.86]
110284821  Tmem173; stimulator of interferon genes protein [KO:K12654]
110308199  probable palmitoyltransferase ZDHHC11 isoform X1 [KO:K20027] [EC:2.3.1.225]
110300021  Zdhhc1; probable palmitoyltransferase ZDHHC1 isoform X1 [KO:K20027] [EC:2.3.1.225]
110307558  Ddx41; probable ATP-dependent RNA helicase DDX41 [KO:K13116] [EC:5.6.2.7]
110303265  Tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
110301565  Ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
110298322  Irf3; interferon regulatory factor 3 [KO:K05411]
110297922  Irf7; interferon regulatory factor 7 isoform X1 [KO:K09447]
110293074  interferon alpha-12 [KO:K05414]
110288626  interferon alpha-7 [KO:K05414]
110288627  interferon alpha-4 [KO:K05414]
110288628  interferon alpha-5-like [KO:K05414]
110292605  interferon alpha-11 [KO:K05414]
110293011  interferon alpha-12-like [KO:K05414]
110293017  interferon alpha-9 [KO:K05414]
110293025  interferon alpha-1-like [KO:K05414]
110292939  interferon alpha-9-like [KO:K05414]
110292945  interferon alpha-1-like [KO:K05414]
110292969  interferon alpha-9-like [KO:K05414]
110292975  interferon alpha-1 [KO:K05414]
110292981  interferon alpha-2-like [KO:K05414]
110293791  Ifnb1; interferon beta [KO:K05415]
110285455  Zbp1; Z-DNA-binding protein 1 isoform X1 [KO:K12965]
110307946  Ripk1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
110309461  Ripk3; receptor-interacting serine/threonine-protein kinase 3 [KO:K08847] [EC:2.7.11.1]
110287188  Ikbkg; NF-kappa-B essential modulator isoform X4 [KO:K07210]
110285285  Chuk; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
110300158  Ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
110297297  Nfkbib; NF-kappa-B inhibitor beta [KO:K02581]
110306864  Nfkbia; NF-kappa-B inhibitor alpha [KO:K04734]
110305759  C-C motif chemokine 4 isoform X1 [KO:K12964]
110305824  Ccl5; C-C motif chemokine 5 [KO:K12499]
110293896  Cxcl10; C-X-C motif chemokine 10 [KO:K12671]
110304475  interferon-inducible protein AIM2 isoform X1 [KO:K12966]
110305596  Nlrp3; NACHT, LRR and PYD domains-containing protein 3 [KO:K12800]
110311817  Mefv; pyrin isoform X1 [KO:K12803]
110298222  Fadd; FAS-associated death domain protein [KO:K02373]
110291975  Casp8; caspase-8 [KO:K04398] [EC:3.4.22.61]
110299014  apoptosis-associated speck-like protein containing a CARD [KO:K12799]
110302061  Casp1; caspase-1 [KO:K01370] [EC:3.4.22.36]
110300641  Mlkl; mixed lineage kinase domain-like protein [KO:K08849] [EC:2.7.11.1]
110299851  Casp3; caspase-3 [KO:K02187] [EC:3.4.22.56]
110285885  Casp7; caspase-7 isoform X1 [KO:K04397] [EC:3.4.22.60]
110296275  Gsdme; gasdermin-E isoform X1 [KO:K22146]
110310447  Gsdmd; gasdermin-D isoform X1 [KO:K20917]
110290100  Il1b; interleukin-1 beta [KO:K04519]
110301583  Il18; interleukin-18 isoform X1 [KO:K05482]
110285692  Il33; interleukin-33 [KO:K12967]
110291799  Adar; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
110289620  Samhd1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1 [KO:K22544] [EC:3.1.5.-]
110302196  Trex1; three-prime repair exonuclease 1 [KO:K10790] [EC:3.1.11.2]
110299623  Dnase2; deoxyribonuclease-2-alpha [KO:K01158] [EC:3.1.22.1]
110291255  Dnase2b; deoxyribonuclease-2-beta [KO:K01158] [EC:3.1.22.1]
Compound
C00039  DNA
C20640  Cyclic GMP-AMP
Reference
  Authors
Yanai H, Savitsky D, Tamura T, Taniguchi T
  Title
Regulation of the cytosolic DNA-sensing system in innate immunity: a current view.
  Journal
Curr Opin Immunol 21:17-22 (2009)
DOI:10.1016/j.coi.2009.01.005
Reference
  Authors
Vilaysane A, Muruve DA
  Title
The innate immune response to DNA.
  Journal
Semin Immunol 21:208-14 (2009)
DOI:10.1016/j.smim.2009.05.006
Reference
  Authors
Takeshita F, Ishii KJ
  Title
Intracellular DNA sensors in immunity.
  Journal
Curr Opin Immunol 20:383-8 (2008)
DOI:10.1016/j.coi.2008.05.009
Reference
  Authors
Takaoka A, Shinohara S
  Title
DNA sensors in innate immune system.
  Journal
Uirusu 58:37-46 (2008)
DOI:10.2222/jsv.58.37
Reference
  Authors
Takaoka A, Taniguchi T
  Title
Cytosolic DNA recognition for triggering innate immune responses.
  Journal
Adv Drug Deliv Rev 60:847-57 (2008)
DOI:10.1016/j.addr.2007.12.002
Reference
  Authors
Kaiser WJ, Upton JW, Mocarski ES
  Title
Receptor-interacting protein homotypic interaction motif-dependent control of NF-kappa B activation via the DNA-dependent activator of IFN regulatory factors.
  Journal
J Immunol 181:6427-34 (2008)
DOI:10.4049/jimmunol.181.9.6427
Reference
  Authors
Rebsamen M, Heinz LX, Meylan E, Michallet MC, Schroder K, Hofmann K, Vazquez J, Benedict CA, Tschopp J
  Title
DAI/ZBP1 recruits RIP1 and RIP3 through RIP homotypic interaction motifs to activate NF-kappaB.
  Journal
EMBO Rep 10:916-22 (2009)
DOI:10.1038/embor.2009.109
Reference
  Authors
Wang Z, Choi MK, Ban T, Yanai H, Negishi H, Lu Y, Tamura T, Takaoka A, Nishikura K, Taniguchi T
  Title
Regulation of innate immune responses by DAI (DLM-1/ZBP1) and other DNA-sensing molecules.
  Journal
Proc Natl Acad Sci U S A 105:5477-82 (2008)
DOI:10.1073/pnas.0801295105
Reference
  Authors
Stetson DB, Ko JS, Heidmann T, Medzhitov R
  Title
Trex1 prevents cell-intrinsic initiation of autoimmunity.
  Journal
Cell 134:587-98 (2008)
DOI:10.1016/j.cell.2008.06.032
Reference
  Authors
Schroder K, Muruve DA, Tschopp J
  Title
Innate immunity: cytoplasmic DNA sensing by the AIM2 inflammasome.
  Journal
Curr Biol 19:R262-5 (2009)
DOI:10.1016/j.cub.2009.02.011
Reference
  Authors
Krieg AM
  Title
AIMing 2 detect foreign DNA.
  Journal
Sci Signal 2:pe39 (2009)
DOI:10.1126/scisignal.277pe39
Reference
  Authors
O'Neill LA
  Title
DNA makes RNA makes innate immunity.
  Journal
Cell 138:428-30 (2009)
DOI:10.1016/j.cell.2009.07.021
Reference
  Authors
Ishii KJ, Coban C, Kato H, Takahashi K, Torii Y, Takeshita F, Ludwig H, Sutter G, Suzuki K, Hemmi H, Sato S, Yamamoto M, Uematsu S, Kawai T, Takeuchi O, Akira S
  Title
A Toll-like receptor-independent antiviral response induced by double-stranded B-form DNA.
  Journal
Nat Immunol 7:40-8 (2006)
DOI:10.1038/ni1282
Reference
  Authors
Cao X
  Title
New DNA-sensing pathway feeds RIG-I with RNA.
  Journal
Nat Immunol 10:1049-51 (2009)
DOI:10.1038/ni1009-1049
Reference
  Authors
Sun L, Wu J, Du F, Chen X, Chen ZJ
  Title
Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway.
  Journal
Science 339:786-91 (2013)
DOI:10.1126/science.1232458
Reference
  Authors
Gao M, He Y, Tang H, Chen X, Liu S, Tao Y
  Title
cGAS/STING: novel perspectives of the classic pathway.
  Journal
Mol Biomed 1:7 (2020)
DOI:10.1186/s43556-020-00006-z
Reference
  Authors
Benjamin P, Sudhakar S, D'Arco F, Lobel U, Carney O, Roux CJ, Boddaert N, Hemingway C, Eleftheriou D, Mankad K
  Title
Spectrum of Neuroradiologic Findings Associated with Monogenic Interferonopathies.
  Journal
AJNR Am J Neuroradiol 43:2-10 (2022)
DOI:10.3174/ajnr.A7362
Reference
  Authors
Place DE, Lee S, Kanneganti TD
  Title
PANoptosis in microbial infection.
  Journal
Curr Opin Microbiol 59:42-49 (2021)
DOI:10.1016/j.mib.2020.07.012
Reference
  Authors
Jiang W, Deng Z, Dai X, Zhao W
  Title
PANoptosis: A New Insight Into Oral Infectious Diseases.
  Journal
Front Immunol 12:789610 (2021)
DOI:10.3389/fimmu.2021.789610
Reference
  Authors
Wang Y, Kanneganti TD
  Title
From pyroptosis, apoptosis and necroptosis to PANoptosis: A mechanistic compendium of programmed cell death pathways.
  Journal
Comput Struct Biotechnol J 19:4641-4657 (2021)
DOI:10.1016/j.csbj.2021.07.038
Related
pathway
mcal04064  NF-kappa B signaling pathway
mcal04120  Ubiquitin mediated proteolysis
mcal04210  Apoptosis
mcal04217  Necroptosis
mcal04621  NOD-like receptor signaling pathway
mcal04622  RIG-I-like receptor signaling pathway
KO pathway
ko04623   
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