KEGG   PATHWAY: mcal04120
Entry
mcal04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Mus caroli (Ryukyu mouse)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mcal04120  Ubiquitin mediated proteolysis
mcal04120

Other DBs
GO: 0016567
Organism
Mus caroli (Ryukyu mouse) [GN:mcal]
Gene
110283642  Cul7; cullin-7 [KO:K10613]
110283766  Elob; elongin-B [KO:K03873]
110284459  Pias2; E3 SUMO-protein ligase PIAS2 isoform X2 [KO:K16063] [EC:2.3.2.-]
110284468  Cul2; cullin-2 [KO:K03870]
110284667  Ube2d2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
110284785  Cdc23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
110285033  Nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X6 [KO:K13305] [EC:2.3.2.26]
110285364  Prpf19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
110285422  Btrc; F-box/WD repeat-containing protein 1A isoform X8 [KO:K03362]
110285702  Anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
110285966  Ddb1; DNA damage-binding protein 1 [KO:K10610]
110286070  Syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
110286178  Huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
110286250  Ubox5; RING finger protein 37 [KO:K10600]
110286548  Mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
110286554  Klhl13; kelch-like protein 13 isoform X2 [KO:K10447]
110286660  Ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
110286671  Xiap; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
110286694  [KO:K06689] [EC:2.3.2.23]
110286730  Ube2l6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
110286869  [KO:K10580] [EC:2.3.2.23]
110286912  [KO:K04506] [EC:2.3.2.27]
110287200  [KO:K10611]
110287372  [KO:K03872]
110287543  Cul4b; cullin-4B [KO:K10609]
110287549  Uba1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
110288104  [KO:K08285] [EC:2.3.2.27]
110289563  Ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
110290093  Ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
110290132  Traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
110290468  Birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
110290680  Ube2d3; ubiquitin-conjugating enzyme E2 D3 isoform X2 [KO:K06689] [EC:2.3.2.23]
110290889  Pias3; E3 SUMO-protein ligase PIAS3 isoform X2 [KO:K16064] [EC:2.3.2.-]
110291195  Ube2q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
110291257  Fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
110291329  Cul3; cullin-3 isoform X1 [KO:K03869]
110291906  Ube2f; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
110292252  Cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
110292576  Ube2j2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
110292603  Eloc; elongin-C [KO:K03872]
110292647  Trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
110292781  Ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
110292786  Ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
110292851  Wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
110293156  Ube2u; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
110293175  Fbxo2; F-box only protein 2 [KO:K10099]
110293189  Klhl9; kelch-like protein 9 [KO:K10447]
110293278  Ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
110293569  [KO:K02977]
110293740  Cdc20; cell division cycle protein 20 homolog [KO:K03363]
110293908  Anapc5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
110293957  [KO:K06689] [EC:2.3.2.23]
110294012  Ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
110294047  Anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
110294056  Anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
110294160  Smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
110294208  Ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
110294340  Rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
110294536  Fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
110294831  Ube2k; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
110295225  Uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
110295730  Uba3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
110296001  Herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
110296040  Cul1; cullin-1 [KO:K03347]
110296073  Ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
110296136  Vhl; von Hippel-Lindau disease tumor suppressor isoform X2 [KO:K03871]
110296312  Cop1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
110297241  Ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
110297391  Sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
110297469  Anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
110297519  [KO:K10595] [EC:2.3.2.26]
110297574  Ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
110298358  Det1; DET1 homolog [KO:K10571]
110298452  Cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
110298686  Uba2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
110298929  Ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
110299673  Cdc16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
110299927  Siah1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
110299956  Uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
110300100  Cul4a; cullin-4A isoform X1 [KO:K10609]
110300318  Anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
110300806  Wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
110300972  Nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
110301158  Pias1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
110301174  Cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
110301267  Uba7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
110301356  Ube4a; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
110301397  Cul5; cullin-5 [KO:K10612]
110301406  Keap1; kelch-like ECH-associated protein 1 [KO:K10456]
110301517  Ube2w; ubiquitin-conjugating enzyme E2 W isoform X3 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
110301529  Anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
110301770  Herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
110301861  Birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
110301964  Pml; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
110301965  Ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
110302142  [KO:K03873]
110302303  [KO:K16060]
110302568  Trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
110302737  Ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
110302849  Herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
110302863  Rhobtb1; rho-related BTB domain-containing protein 1 [KO:K07868]
110303085  Aire; autoimmune regulator isoform X1 [KO:K10603]
110303107  Ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
110303209  Cdc34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
110303423  Anapc16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
110303528  Ube2d1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
110303712  Mdm2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
110303783  Pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
110303931  Fzr1; fizzy-related protein homolog [KO:K03364]
110304371  Smurf2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
110304504  [KO:K02927]
110304539  Trim37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
110304553  Ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
110304614  Brca1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
110304634  Fbxw11; F-box/WD repeat-containing protein 11 isoform X5 [KO:K03362]
110304665  Cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
110304930  Socs3; suppressor of cytokine signaling 3 [KO:K04696]
110305037  Ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
110305141  Rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
110305282  Fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
110305356  Anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
110305613  Ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
110305852  Skp1; S-phase kinase-associated protein 1 [KO:K03094]
110305876  Ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
110306310  Ube2d4; ubiquitin-conjugating enzyme E2 D4 isoform X3 [KO:K06689] [EC:2.3.2.23]
110306700  [KO:K10687] [EC:2.3.2.34]
110307021  [KO:K10575] [EC:2.3.2.23]
110307741  Map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
110307850  Ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
110308215  Nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
110308574  Ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
110308876  Ube2e1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
110309136  Ube2e2; ubiquitin-conjugating enzyme E2 E2 isoform X7 [KO:K20217] [EC:2.3.2.23]
110309139  Rhobtb2; rho-related BTB domain-containing protein 2 [KO:K07868]
110309477  Itch; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
110309589  Anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
110310405  Skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
110310464  Rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
110310492  Ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
110310510  Fbxo4; F-box only protein 4 [KO:K10291]
110311127  Cblb; E3 ubiquitin-protein ligase CBL-B isoform X2 [KO:K22517] [EC:2.3.2.27]
110311159  Mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
110311281  Ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
110311282  Ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
110311816  Socs1; suppressor of cytokine signaling 1 [KO:K04694]
110312460  Ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
110312483  Birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
110312519  Ube2e3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
110312536  Stub1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
110312630  Prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mcal03050  Proteasome
KO pathway
ko04120   

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