KEGG   PATHWAY: smo04120
Entry
smo04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Selaginella moellendorffii
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
smo04120  Ubiquitin mediated proteolysis
smo04120

Other DBs
GO: 0016567
Organism
Selaginella moellendorffii [GN:smo]
Gene
SELMODRAFT_101548  [KO:K02927]
SELMODRAFT_104399  DET1-2; hypothetical protein [KO:K10571]
SELMODRAFT_104652  UPL7-2; ubiquitin-protein ligase, UPL7 [KO:K10588] [EC:2.3.2.26]
SELMODRAFT_104828  [KO:K03352]
SELMODRAFT_106838  [KO:K03872]
SELMODRAFT_106904  [KO:K10686] [EC:6.2.1.64]
SELMODRAFT_108289  [KO:K03364]
SELMODRAFT_111605  [KO:K02977]
SELMODRAFT_113369  [KO:K10684] [EC:6.2.1.45]
SELMODRAFT_114410  [KO:K10601] [EC:2.3.2.27]
SELMODRAFT_116003  UBC35-1; ubiquitin-conjugating enzyme 35, E2 [KO:K10580] [EC:2.3.2.23]
SELMODRAFT_119447  [KO:K09561] [EC:2.3.2.27]
SELMODRAFT_119614  SINAT5A-2; hypothetical protein [KO:K04506] [EC:2.3.2.27]
SELMODRAFT_12113  [KO:K10601] [EC:2.3.2.27]
SELMODRAFT_121306  RCE3-2; hypothetical protein [KO:K10579] [EC:2.3.2.34]
SELMODRAFT_121776  [KO:K03363]
SELMODRAFT_125570  [KO:K03352]
SELMODRAFT_126964  [KO:K03348]
SELMODRAFT_127189  [KO:K03094]
SELMODRAFT_127825  [KO:K02977]
SELMODRAFT_128698  [KO:K03358]
SELMODRAFT_129786  [KO:K03364]
SELMODRAFT_131125  [KO:K10685] [EC:6.2.1.45]
SELMODRAFT_133097  [KO:K03875]
SELMODRAFT_133180  [KO:K03875]
SELMODRAFT_134879  UBC35-2; ubiquitin-conjugating enzyme 35, E2 [KO:K10580] [EC:2.3.2.23]
SELMODRAFT_135403  [KO:K10685] [EC:6.2.1.45]
SELMODRAFT_136955  CUL3-2; hypothetical protein [KO:K03869]
SELMODRAFT_138055  [KO:K03348]
SELMODRAFT_139237  [KO:K03363]
SELMODRAFT_141846  COP1L1-1; hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_142432  UFD2-1; ubiquitin-protein ligase, UFD2 [KO:K10597] [EC:2.3.2.27]
SELMODRAFT_145521  DDB1-1; hypothetical protein [KO:K10610]
SELMODRAFT_145850  UBC22-1; ubiquitin-conjugating enzyme 22, E2 [KO:K10583] [EC:2.3.2.23]
SELMODRAFT_145914  [KO:K03178] [EC:6.2.1.45]
SELMODRAFT_146155  UPL3-2; ubiquitin-protein ligase, UPL3 [KO:K10590] [EC:2.3.2.26]
SELMODRAFT_147206  [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_149458  UPL3-1; ubiquitin-protein ligase, UPL3 [KO:K10590] [EC:2.3.2.26]
SELMODRAFT_151061  DDB1-2; hypothetical protein [KO:K10610]
SELMODRAFT_154042  SKP1-2; hypothetical protein [KO:K03094]
SELMODRAFT_154179  UPL1-2; ubiquitin-protein ligase, UPL1 [KO:K10592] [EC:2.3.2.26]
SELMODRAFT_158171  CUL1-2; hypothetical protein [KO:K03347]
SELMODRAFT_15877  UBC33-2; ubiquitin-conjugating enzyme 33, E2 [KO:K04554] [EC:2.3.2.23]
SELMODRAFT_159187  UBC15-2; ubiquitin-conjugating enzyme 15, E2 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
SELMODRAFT_159611  [KO:K10570]
SELMODRAFT_160088  UPL1-1; ubiquitin-protein ligase, UPL1 [KO:K10592] [EC:2.3.2.26]
SELMODRAFT_160563  UBC22-2; ubiquitin-conjugating enzyme 22, E2 [KO:K10583] [EC:2.3.2.23]
SELMODRAFT_161306  [KO:K03178] [EC:6.2.1.45]
SELMODRAFT_162003  [KO:K08770]
SELMODRAFT_162102  UFD2-2; ubiquitin-protein ligase, UFD2 [KO:K10597] [EC:2.3.2.27]
SELMODRAFT_162680  [KO:K08770]
SELMODRAFT_163447  [KO:K08770]
SELMODRAFT_167525  DET1-1; hypothetical protein [KO:K10571]
SELMODRAFT_168695  PUB59-2; ubiquitin-protein ligase, PUB59 [KO:K10599] [EC:2.3.2.27]
SELMODRAFT_171333  COP1-1; hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_172555  UBC16-2; ubiquitin-conjugating enzyme 16, E2 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
SELMODRAFT_172620  CUL4-1; ubiquitin-protein ligase, Cullin 4 [KO:K10609]
SELMODRAFT_173394  CUL1-1; hypothetical protein [KO:K03347]
SELMODRAFT_173723  [KO:K08770]
SELMODRAFT_174709  [KO:K10686] [EC:6.2.1.64]
SELMODRAFT_174924  UBC5-4; ubiquitin-conjugating enzyme 5, E2 [KO:K10576] [EC:2.3.2.23]
SELMODRAFT_176960  COP1-2; hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_179776  [KO:K03178] [EC:6.2.1.45]
SELMODRAFT_180735  CUL4-2; ubiquitin-protein ligase, cullin 4 [KO:K10609]
SELMODRAFT_181155  UBC19-1; ubiquitin-conjugating enzyme 19, E2 [KO:K06688] [EC:2.3.2.23]
SELMODRAFT_185331  [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_185454  [KO:K03178] [EC:6.2.1.45]
SELMODRAFT_186167  UBC27-1; ubiquitin-conjugating enzyme 27, E2 [KO:K04649] [EC:2.3.2.23]
SELMODRAFT_187468  UBC11-1; ubiquitin-conjugating enzyme 11, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_19615  [KO:K02927]
SELMODRAFT_19616  [KO:K02927]
SELMODRAFT_20278  [KO:K10581] [EC:2.3.2.24]
SELMODRAFT_21554  [KO:K10140]
SELMODRAFT_227280  [KO:K08770]
SELMODRAFT_228312  UBC1-4; ubiquitin-conjugating enzyme 1, E2 [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_228475  UBC1-3; ubiquitin-conjugating enzyme 1, E2 [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_228869  UBC1-2; ubiquitin-conjugating enzyme 1, E2 [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_228916  UBC28-2; ubiquitin-conjugating enzyme 28, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_228943  [KO:K08770]
SELMODRAFT_229944  [KO:K03363]
SELMODRAFT_230701  [KO:K10144] [EC:2.3.2.27]
SELMODRAFT_230840  [KO:K03364]
SELMODRAFT_233294  [KO:K10570]
SELMODRAFT_233935  UBC11-2; ubiquitin-conjugating enzyme 11, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_234427  [KO:K03363]
SELMODRAFT_266832  [KO:K10570]
SELMODRAFT_267846  PUB49-2; ubiquitin-protein ligase, PUB49 [KO:K10598] [EC:5.2.1.8]
SELMODRAFT_268066  UBC16-1; ubiquitin-conjugating enzyme 16, E2 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
SELMODRAFT_268860  CDC23-2; hypothetical protein [KO:K03355]
SELMODRAFT_268881  SINAT5B-2; hypothetical protein [KO:K04506] [EC:2.3.2.27]
SELMODRAFT_269625  [KO:K03868] [EC:2.3.2.32]
SELMODRAFT_269937  [KO:K03868] [EC:2.3.2.32]
SELMODRAFT_270384  UBC28-4; ubiquitin-conjugating enzyme 28, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_270432  PUB49-1; ubiquitin-protein ligase, PUB49 [KO:K10598] [EC:5.2.1.8]
SELMODRAFT_270468  [KO:K08770]
SELMODRAFT_270923  UBC28-3; ubiquitin-conjugating enzyme 28, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_270987  UBC15-1; ubiquitin-conjugating enzyme 15, E2 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
SELMODRAFT_271198  [KO:K08770]
SELMODRAFT_271223  SKP1-1; hypothetical protein [KO:K03094]
SELMODRAFT_271419  [KO:K08770]
SELMODRAFT_271478  UBC1-1; ubiquitin-conjugating enzyme 1, E2 [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_272183  [KO:K03353]
SELMODRAFT_272222  [KO:K03353]
SELMODRAFT_30432  [KO:K10581] [EC:2.3.2.24]
SELMODRAFT_31884  [KO:K10140]
SELMODRAFT_36529  UBC33-1; ubiquitin-conjugating enzyme 33, E2 [KO:K04554] [EC:2.3.2.23]
SELMODRAFT_39470  [KO:K03358]
SELMODRAFT_409247  [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_409868  HBT1-1; hypothetical protein [KO:K03350]
SELMODRAFT_410607  [KO:K10099]
SELMODRAFT_418725  [KO:K10608] [EC:2.3.2.27]
SELMODRAFT_420080  [KO:K03349]
SELMODRAFT_420884  [KO:K10099]
SELMODRAFT_425390  [KO:K10608] [EC:2.3.2.27]
SELMODRAFT_429827  [KO:K10608] [EC:2.3.2.27]
SELMODRAFT_431029  HBT1-2; hypothetical protein [KO:K03350]
SELMODRAFT_437541  PUB59-1; ubiquitin-protein ligase, PUB59 [KO:K10599] [EC:2.3.2.27]
SELMODRAFT_441208  [KO:K03354]
SELMODRAFT_443962  [KO:K10589] [EC:2.3.2.26]
SELMODRAFT_444188  [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_447965  [KO:K10587] [EC:2.3.2.26]
SELMODRAFT_447996  [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_449109  [KO:K03869]
SELMODRAFT_449723  UBC8-1; ubiquitin conjugating enzyme 8, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_449724  UBC28-1; ubiquitin-conjugating enzyme 28 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_449731  COP10-1; ubiquitin conjugating enzyme COP10 [KO:K20217] [EC:2.3.2.23]
SELMODRAFT_449734  COP10-2; ubiquitin conjugating enzyme COP10 [KO:K20217] [EC:2.3.2.23]
SELMODRAFT_450631  [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_450635  UBC19-2; ubiquitin-conjugating enzyme 19, E2 [KO:K06688] [EC:2.3.2.23]
SELMODRAFT_450639  SCE1a; SUMO-conjugating enzyme 1a [KO:K10577]
SELMODRAFT_450643  UBC32-1; ubiquitin-conjugating enzyme 32, E2 [KO:K10578] [EC:2.3.2.23]
SELMODRAFT_450656  RCE2-1; RUB1-conjugating enzyme 2, E2 [KO:K10579] [EC:2.3.2.34]
SELMODRAFT_450657  RCE2-2; RUB1-conjugating enzyme 2, E2 [KO:K10579] [EC:2.3.2.34]
SELMODRAFT_450658  UBC5-1; ubiquitin-conjugating enzyme 5, E2 [KO:K10576] [EC:2.3.2.23]
SELMODRAFT_450660  UBC5-2; ubiquitin-conjugating enzyme 5, E2 [KO:K10576] [EC:2.3.2.23]
SELMODRAFT_450663  RCE1-2; RUB1-conjugating enzyme 2, E2 [KO:K10579] [EC:2.3.2.34]
SELMODRAFT_450664  RCE1-1; RUB1-conjugating enzyme 2, E2 [KO:K10579] [EC:2.3.2.34]
SELMODRAFT_450670  UBC8-2; ubiquitin-conjugating enzyme 8, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_451298  COP1L2-1; hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_451299  COP1L2-2; hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_451540  CDC23-1; hypothetical protein [KO:K03355]
SELMODRAFT_74711  [KO:K09561] [EC:2.3.2.27]
SELMODRAFT_74865  UBC13-1; ubiquitin-conjugating enzyme 13, E2 [KO:K10575] [EC:2.3.2.23]
SELMODRAFT_78412  [KO:K10144] [EC:2.3.2.27]
SELMODRAFT_78512  [KO:K03364]
SELMODRAFT_79209  [KO:K03349]
SELMODRAFT_81550  UBC5-3; ubiquitin-conjugating enzyme 5, E2 [KO:K10576] [EC:2.3.2.23]
SELMODRAFT_86492  [KO:K03363]
SELMODRAFT_87352  UBC13-2; ubiquitin-conjugating enzyme 13, E2 [KO:K10575] [EC:2.3.2.23]
SELMODRAFT_89017  [KO:K03351]
SELMODRAFT_89794  UPL7-1; ubiquitin-protein ligase, UPL7 [KO:K10588] [EC:2.3.2.26]
SELMODRAFT_92939  [KO:K03363]
SELMODRAFT_95808  UBC27-2; ubiquitin-conjugating enzyme 27, E2 [KO:K04649] [EC:2.3.2.23]
SELMODRAFT_96367  [KO:K03872]
SELMODRAFT_96868  [KO:K03357]
SELMODRAFT_96982  [KO:K03357]
SELMODRAFT_97849  SINAT5A-1; hypothetical protein [KO:K04506] [EC:2.3.2.27]
SELMODRAFT_98006  CUL3-1; hypothetical protein [KO:K03869]
SELMODRAFT_98090  SINAT5B-1; hypothetical protein [KO:K04506] [EC:2.3.2.27]
SELMODRAFT_98222  [KO:K03869]
SELMODRAFT_98727  [KO:K03094]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
smo03050  Proteasome
KO pathway
ko04120   

DBGET integrated database retrieval system