KEGG   PATHWAY: smo04120
Entry
smo04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Selaginella moellendorffii
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
smo04120  Ubiquitin mediated proteolysis
smo04120

Other DBs
GO: 0016567
Organism
Selaginella moellendorffii [GN:smo]
Gene
SELMODRAFT_227280  hypothetical protein [KO:K08770]
SELMODRAFT_101548  hypothetical protein [KO:K02927]
SELMODRAFT_19616  hypothetical protein [KO:K02927]
SELMODRAFT_19615  hypothetical protein [KO:K02927]
SELMODRAFT_111605  hypothetical protein [KO:K02977]
SELMODRAFT_127825  hypothetical protein [KO:K02977]
SELMODRAFT_145914  hypothetical protein [KO:K03178] [EC:6.2.1.45]
SELMODRAFT_179776  hypothetical protein [KO:K03178] [EC:6.2.1.45]
SELMODRAFT_161306  hypothetical protein [KO:K03178] [EC:6.2.1.45]
SELMODRAFT_185454  hypothetical protein [KO:K03178] [EC:6.2.1.45]
SELMODRAFT_113369  hypothetical protein [KO:K10684] [EC:6.2.1.45]
SELMODRAFT_135403  SUMO activating enzyme 2 [KO:K10685] [EC:6.2.1.45]
SELMODRAFT_131125  SUMO activating enzyme 2 [KO:K10685] [EC:6.2.1.45]
SELMODRAFT_106904  hypothetical protein [KO:K10686] [EC:6.2.1.64]
SELMODRAFT_174709  hypothetical protein [KO:K10686] [EC:6.2.1.64]
SELMODRAFT_228869  UBC1-2; ubiquitin-conjugating enzyme 1, E2 [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_228475  UBC1-3; ubiquitin-conjugating enzyme 1, E2 [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_271478  UBC1-1; ubiquitin-conjugating enzyme 1, E2 [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_228312  UBC1-4; ubiquitin-conjugating enzyme 1, E2 [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_450631  ubiquitin-conjugating enzyme 1, E2-like protein [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_185331  ubiquitin-conjugating enzyme 1, E2 [KO:K10573] [EC:2.3.2.23]
SELMODRAFT_181155  UBC19-1; ubiquitin-conjugating enzyme 19, E2 [KO:K06688] [EC:2.3.2.23]
SELMODRAFT_450635  UBC19-2; ubiquitin-conjugating enzyme 19, E2 [KO:K06688] [EC:2.3.2.23]
SELMODRAFT_270923  UBC28-3; ubiquitin-conjugating enzyme 28, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_270384  UBC28-4; ubiquitin-conjugating enzyme 28, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_228916  UBC28-2; ubiquitin-conjugating enzyme 28, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_449723  UBC8-1; ubiquitin conjugating enzyme 8, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_187468  UBC11-1; ubiquitin-conjugating enzyme 11, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_233935  UBC11-2; ubiquitin-conjugating enzyme 11, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_449724  UBC28-1; ubiquitin-conjugating enzyme 28 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_450670  UBC8-2; ubiquitin-conjugating enzyme 8, E2 [KO:K06689] [EC:2.3.2.23]
SELMODRAFT_449734  COP10-2; ubiquitin conjugating enzyme COP10 [KO:K20217] [EC:2.3.2.23]
SELMODRAFT_449731  COP10-1; ubiquitin conjugating enzyme COP10 [KO:K20217] [EC:2.3.2.23]
SELMODRAFT_74865  UBC13-1; ubiquitin-conjugating enzyme 13, E2 [KO:K10575] [EC:2.3.2.23]
SELMODRAFT_87352  UBC13-2; ubiquitin-conjugating enzyme 13, E2 [KO:K10575] [EC:2.3.2.23]
SELMODRAFT_81550  UBC5-3; ubiquitin-conjugating enzyme 5, E2 [KO:K10576] [EC:2.3.2.23]
SELMODRAFT_450658  UBC5-1; ubiquitin-conjugating enzyme 5, E2 [KO:K10576] [EC:2.3.2.23]
SELMODRAFT_450660  UBC5-2; ubiquitin-conjugating enzyme 5, E2 [KO:K10576] [EC:2.3.2.23]
SELMODRAFT_174924  UBC5-4; ubiquitin-conjugating enzyme 5, E2 [KO:K10576] [EC:2.3.2.23]
SELMODRAFT_450639  SCE1a; SUMO-conjugating enzyme 1a [KO:K10577]
SELMODRAFT_450643  UBC32-1; ubiquitin-conjugating enzyme 32, E2 [KO:K10578] [EC:2.3.2.23]
SELMODRAFT_15877  UBC33-2; ubiquitin-conjugating enzyme 33, E2 [KO:K04554] [EC:2.3.2.23]
SELMODRAFT_36529  UBC33-1; ubiquitin-conjugating enzyme 33, E2 [KO:K04554] [EC:2.3.2.23]
SELMODRAFT_186167  UBC27-1; ubiquitin-conjugating enzyme 27, E2 [KO:K04649] [EC:2.3.2.23]
SELMODRAFT_95808  UBC27-2; ubiquitin-conjugating enzyme 27, E2 [KO:K04649] [EC:2.3.2.23]
SELMODRAFT_450656  RCE2-1; RUB1-conjugating enzyme 2, E2 [KO:K10579] [EC:2.3.2.34]
SELMODRAFT_450663  RCE1-2; RUB1-conjugating enzyme 2, E2 [KO:K10579] [EC:2.3.2.34]
SELMODRAFT_450664  RCE1-1; RUB1-conjugating enzyme 2, E2 [KO:K10579] [EC:2.3.2.34]
SELMODRAFT_121306  RCE3-2; hypothetical protein [KO:K10579] [EC:2.3.2.34]
SELMODRAFT_450657  RCE2-2; RUB1-conjugating enzyme 2, E2 [KO:K10579] [EC:2.3.2.34]
SELMODRAFT_116003  UBC35-1; ubiquitin-conjugating enzyme 35, E2 [KO:K10580] [EC:2.3.2.23]
SELMODRAFT_134879  UBC35-2; ubiquitin-conjugating enzyme 35, E2 [KO:K10580] [EC:2.3.2.23]
SELMODRAFT_30432  hypothetical protein [KO:K10581] [EC:2.3.2.24]
SELMODRAFT_20278  hypothetical protein [KO:K10581] [EC:2.3.2.24]
SELMODRAFT_145850  UBC22-1; ubiquitin-conjugating enzyme 22, E2 [KO:K10583] [EC:2.3.2.23]
SELMODRAFT_160563  UBC22-2; ubiquitin-conjugating enzyme 22, E2 [KO:K10583] [EC:2.3.2.23]
SELMODRAFT_268066  UBC16-1; ubiquitin-conjugating enzyme 16, E2 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
SELMODRAFT_159187  UBC15-2; ubiquitin-conjugating enzyme 15, E2 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
SELMODRAFT_172555  UBC16-2; ubiquitin-conjugating enzyme 16, E2 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
SELMODRAFT_270987  UBC15-1; ubiquitin-conjugating enzyme 15, E2 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
SELMODRAFT_447965  hypothetical protein [KO:K10587] [EC:2.3.2.26]
SELMODRAFT_89794  UPL7-1; ubiquitin-protein ligase, UPL7 [KO:K10588] [EC:2.3.2.26]
SELMODRAFT_104652  UPL7-2; ubiquitin-protein ligase, UPL7 [KO:K10588] [EC:2.3.2.26]
SELMODRAFT_443962  hypothetical protein [KO:K10589] [EC:2.3.2.26]
SELMODRAFT_146155  UPL3-2; ubiquitin-protein ligase, UPL3 [KO:K10590] [EC:2.3.2.26]
SELMODRAFT_149458  UPL3-1; ubiquitin-protein ligase, UPL3 [KO:K10590] [EC:2.3.2.26]
SELMODRAFT_160088  UPL1-1; ubiquitin-protein ligase, UPL1 [KO:K10592] [EC:2.3.2.26]
SELMODRAFT_154179  UPL1-2; ubiquitin-protein ligase, UPL1 [KO:K10592] [EC:2.3.2.26]
SELMODRAFT_162102  UFD2-2; ubiquitin-protein ligase, UFD2 [KO:K10597] [EC:2.3.2.27]
SELMODRAFT_142432  UFD2-1; ubiquitin-protein ligase, UFD2 [KO:K10597] [EC:2.3.2.27]
SELMODRAFT_74711  ubiquitin-protein ligase, PUB61 [KO:K09561] [EC:2.3.2.27]
SELMODRAFT_119447  ubiquitin-protein ligase, PUB61 [KO:K09561] [EC:2.3.2.27]
SELMODRAFT_270432  PUB49-1; ubiquitin-protein ligase, PUB49 [KO:K10598] [EC:5.2.1.8]
SELMODRAFT_267846  PUB49-2; ubiquitin-protein ligase, PUB49 [KO:K10598] [EC:5.2.1.8]
SELMODRAFT_437541  PUB59-1; ubiquitin-protein ligase, PUB59 [KO:K10599] [EC:2.3.2.27]
SELMODRAFT_168695  PUB59-2; ubiquitin-protein ligase, PUB59 [KO:K10599] [EC:2.3.2.27]
SELMODRAFT_268881  SINAT5B-2; hypothetical protein [KO:K04506] [EC:2.3.2.27]
SELMODRAFT_119614  SINAT5A-2; hypothetical protein [KO:K04506] [EC:2.3.2.27]
SELMODRAFT_97849  SINAT5A-1; hypothetical protein [KO:K04506] [EC:2.3.2.27]
SELMODRAFT_98090  SINAT5B-1; hypothetical protein [KO:K04506] [EC:2.3.2.27]
SELMODRAFT_451298  COP1L2-1; hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_176960  COP1-2; hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_141846  COP1L1-1; hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_409247  hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_147206  hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_447996  hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_444188  hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_171333  COP1-1; hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_451299  COP1L2-2; hypothetical protein [KO:K10143] [EC:2.3.2.27]
SELMODRAFT_78412  hypothetical protein [KO:K10144] [EC:2.3.2.27]
SELMODRAFT_230701  hypothetical protein [KO:K10144] [EC:2.3.2.27]
SELMODRAFT_12113  hypothetical protein [KO:K10601] [EC:2.3.2.27]
SELMODRAFT_114410  hypothetical protein [KO:K10601] [EC:2.3.2.27]
SELMODRAFT_429827  hypothetical protein [KO:K10608] [EC:2.3.2.27]
SELMODRAFT_418725  hypothetical protein [KO:K10608] [EC:2.3.2.27]
SELMODRAFT_425390  hypothetical protein [KO:K10608] [EC:2.3.2.27]
SELMODRAFT_269937  hypothetical protein [KO:K03868] [EC:2.3.2.32]
SELMODRAFT_269625  hypothetical protein [KO:K03868] [EC:2.3.2.32]
SELMODRAFT_173394  CUL1-1; hypothetical protein [KO:K03347]
SELMODRAFT_158171  CUL1-2; hypothetical protein [KO:K03347]
SELMODRAFT_271223  SKP1-1; hypothetical protein [KO:K03094]
SELMODRAFT_154042  SKP1-2; hypothetical protein [KO:K03094]
SELMODRAFT_98727  hypothetical protein [KO:K03094]
SELMODRAFT_127189  hypothetical protein [KO:K03094]
SELMODRAFT_133097  hypothetical protein [KO:K03875]
SELMODRAFT_133180  hypothetical protein [KO:K03875]
SELMODRAFT_410607  hypothetical protein [KO:K10099]
SELMODRAFT_420884  hypothetical protein [KO:K10099]
SELMODRAFT_106838  hypothetical protein [KO:K03872]
SELMODRAFT_96367  hypothetical protein [KO:K03872]
SELMODRAFT_136955  CUL3-2; hypothetical protein [KO:K03869]
SELMODRAFT_98222  hypothetical protein [KO:K03869]
SELMODRAFT_98006  CUL3-1; hypothetical protein [KO:K03869]
SELMODRAFT_449109  hypothetical protein [KO:K03869]
SELMODRAFT_180735  CUL4-2; ubiquitin-protein ligase, cullin 4 [KO:K10609]
SELMODRAFT_172620  CUL4-1; ubiquitin-protein ligase, Cullin 4 [KO:K10609]
SELMODRAFT_145521  DDB1-1; hypothetical protein [KO:K10610]
SELMODRAFT_151061  DDB1-2; hypothetical protein [KO:K10610]
SELMODRAFT_21554  hypothetical protein [KO:K10140]
SELMODRAFT_31884  hypothetical protein [KO:K10140]
SELMODRAFT_159611  hypothetical protein [KO:K10570]
SELMODRAFT_233294  hypothetical protein [KO:K10570]
SELMODRAFT_266832  hypothetical protein [KO:K10570]
SELMODRAFT_104399  DET1-2; hypothetical protein [KO:K10571]
SELMODRAFT_167525  DET1-1; hypothetical protein [KO:K10571]
SELMODRAFT_39470  hypothetical protein [KO:K03358]
SELMODRAFT_128698  hypothetical protein [KO:K03358]
SELMODRAFT_79209  hypothetical protein [KO:K03349]
SELMODRAFT_420080  hypothetical protein [KO:K03349]
SELMODRAFT_229944  hypothetical protein [KO:K03363]
SELMODRAFT_139237  hypothetical protein [KO:K03363]
SELMODRAFT_92939  hypothetical protein [KO:K03363]
SELMODRAFT_121776  hypothetical protein [KO:K03363]
SELMODRAFT_86492  hypothetical protein [KO:K03363]
SELMODRAFT_234427  hypothetical protein [KO:K03363]
SELMODRAFT_129786  hypothetical protein [KO:K03364]
SELMODRAFT_78512  hypothetical protein [KO:K03364]
SELMODRAFT_108289  hypothetical protein [KO:K03364]
SELMODRAFT_230840  hypothetical protein [KO:K03364]
SELMODRAFT_126964  hypothetical protein [KO:K03348]
SELMODRAFT_138055  hypothetical protein [KO:K03348]
SELMODRAFT_409868  HBT1-1; hypothetical protein [KO:K03350]
SELMODRAFT_431029  HBT1-2; hypothetical protein [KO:K03350]
SELMODRAFT_89017  hypothetical protein [KO:K03351]
SELMODRAFT_104828  hypothetical protein [KO:K03352]
SELMODRAFT_125570  hypothetical protein [KO:K03352]
SELMODRAFT_272183  hypothetical protein [KO:K03353]
SELMODRAFT_272222  hypothetical protein [KO:K03353]
SELMODRAFT_441208  hypothetical protein [KO:K03354]
SELMODRAFT_268860  CDC23-2; hypothetical protein [KO:K03355]
SELMODRAFT_451540  CDC23-1; hypothetical protein [KO:K03355]
SELMODRAFT_96868  hypothetical protein [KO:K03357]
SELMODRAFT_96982  hypothetical protein [KO:K03357]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
smo03050  Proteasome
KO pathway
ko04120   
LinkDB

DBGET integrated database retrieval system