KEGG   PATHWAY: sscv04137
Entry
sscv04137                   Pathway                                
Name
Mitophagy - animal - Syngnathus scovelli (Gulf pipefish)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
sscv04137  Mitophagy - animal
sscv04137

Other DBs
GO: 0000422
Organism
Syngnathus scovelli (Gulf pipefish) [GN:sscv]
Gene
125970081  activating molecule in BECN1-regulated autophagy protein 1B isoform X1 [KO:K17985]
125986833  mitochondrial import receptor subunit TOM7 homolog [KO:K17771]
125982709  si:dkey-71l1.1; mitochondrial import receptor subunit TOM40B isoform X1 [KO:K11518]
125975765  mitochondrial import receptor subunit TOM40 homolog [KO:K11518]
125987374  mitochondrial import receptor subunit TOM40B [KO:K11518]
125968523  mitochondrial import receptor subunit TOM20 homolog B isoform X1 [KO:K17770]
125971196  mitochondrial import receptor subunit TOM70 [KO:K17768]
125978860  E3 ubiquitin-protein ligase MARCH5 [KO:K10660] [EC:2.3.2.27]
125979284  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
125979942  TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
125994759  TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]
125983126  E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
125984109  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
125969534  E3 ubiquitin-protein ligase SMURF2-like isoform X1 [KO:K04678] [EC:2.3.2.26]
125967591  E3 ubiquitin-protein ligase AMFR-like isoform X1 [KO:K10636] [EC:2.3.2.36]
125985473  mitochondrial ubiquitin ligase activator of nfkb 1-A [KO:K15688] [EC:2.3.2.27]
125987730  mitochondrial ubiquitin ligase activator of NFKB 1 isoform X1 [KO:K15688] [EC:2.3.2.27]
125988823  E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
125970549  E3 ubiquitin-protein ligase Siah1 [KO:K04506] [EC:2.3.2.27]
125970983  E3 ubiquitin-protein ligase arih1 [KO:K11968] [EC:2.3.2.31]
125969473  mitofusin-1b [KO:K21356] [EC:3.6.5.-]
125989116  mitofusin-2 [KO:K06030] [EC:3.6.5.-]
125983315  mitochondrial Rho GTPase 1-A isoform X1 [KO:K07870] [EC:3.6.5.-]
125969378  mitochondrial Rho GTPase 1b isoform X1 [KO:K07870] [EC:3.6.5.-]
125991493  mitochondrial Rho GTPase 2 [KO:K07871] [EC:3.6.5.-]
125968683  ubiquitin-60S ribosomal protein L40 [KO:K02927]
125978139  ubiquitin-40S ribosomal protein S27a [KO:K02977]
125982714  polyubiquitin-B isoform X1 [KO:K04551]
125982660  polyubiquitin-C isoform X1 [KO:K08770]
125982724  polyubiquitin-like [KO:K08770]
125975522  tax1-binding protein 1 homolog B isoform X1 [KO:K21347]
125986724  tax1-binding protein 1 homolog A-like [KO:K21347]
125974820  sequestosome-1 isoform X1 [KO:K14381]
125992218  optineurin [KO:K19946]
125983377  next to BRCA1 gene 1 protein [KO:K17987]
125991744  NBR1 autophagy cargo receptor a [KO:K17987]
125991943  serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
125967105  gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
125975826  zgc:92606; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
125993263  gamma-aminobutyric acid receptor-associated protein [KO:K08341]
125968517  microtubule-associated proteins 1A/1B light chain 3C [KO:K10435]
125984643  microtubule-associated proteins 1A/1B light chain 3C [KO:K10435]
125970536  microtubule-associated proteins 1A/1B light chain 3B [KO:K10435]
125990886  beclin-1 isoform X1 [KO:K08334]
125967116  ubiquitin carboxyl-terminal hydrolase 8 [KO:K11839] [EC:3.4.19.12]
125992173  ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [KO:K21343] [EC:3.4.19.12]
125993709  ubiquitin carboxyl-terminal hydrolase 30 isoform X1 [KO:K11851] [EC:3.4.19.12]
125989372  bcl-2-like protein 1 [KO:K04570]
125993912  serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1 [KO:K15637] [EC:3.1.3.16]
125967094  casein kinase 2, alpha prime polypeptide a isoform X1 [KO:K03097] [EC:2.7.11.1]
125975568  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
125976978  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
125970346  casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
125986603  casein kinase II subunit beta [KO:K03115]
125977384  proto-oncogene tyrosine-protein kinase Src-like isoform X1 [KO:K05704] [EC:2.7.10.2]
125988808  proto-oncogene tyrosine-protein kinase Src isoform X1 [KO:K05704] [EC:2.7.10.2]
125980188  serine/threonine-protein kinase ULK1 [KO:K21357] [EC:2.7.11.1]
125993715  serine/threonine-protein kinase ULK1a isoform X1 [KO:K21357] [EC:2.7.11.1]
125973261  FUN14 domain-containing protein 1 isoform X1 [KO:K17986]
125987997  FUN14 domain-containing protein 1 isoform X1 [KO:K17986]
125978901  BCL2 interacting protein 4 [KO:K15464]
125979587  zgc:73226; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
125980200  BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [KO:K15465]
125993705  BCL2 interacting protein 3 like a [KO:K15465]
125971199  bcl-2-like protein 13 [KO:K15485]
125970128  FKBP prolyl isomerase 16 isoform X1 [KO:K09574] [EC:5.2.1.8]
125974640  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X1 [KO:K09574] [EC:5.2.1.8]
125970929  sorting and assembly machinery component 50 homolog A isoform X1 [KO:K07277]
125975629  prohibitin-2-like [KO:K17081]
125972201  NLR family member X1 isoform X1 [KO:K12653]
125975074  metaxin-1-like isoform X1 [KO:K17776]
125978524  metaxin-2 [KO:K17776]
125994510  metaxin-3 isoform X1 [KO:K17776]
125980636  eukaryotic translation initiation factor 2-alpha kinase 3 [KO:K08860] [EC:2.7.11.1]
125990230  eukaryotic translation initiation factor 2 subunit 1b [KO:K03237]
125968687  cyclic AMP-dependent transcription factor ATF-4 isoform X1 [KO:K04374]
125983056  activating transcription factor 4b [KO:K04374]
125983268  mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
125978334  mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
125990945  mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
125980080  mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
125976226  transcription factor AP-1 [KO:K04448]
125984729  transcription factor Jun-like [KO:K04448]
125979215  junE proto-oncogene, AP-1 transcription factor subunit [KO:K04448]
125982490  transcription factor p65 isoform X1 [KO:K04735]
125970651  HRas proto-oncogene, GTPase a [KO:K02833]
125983169  zgc:55558; GTPase KRas [KO:K07827]
125970052  GTPase KRas isoform X1 [KO:K07827]
125973341  ras-related protein M-Ras [KO:K07831]
125967565  ras-related protein R-Ras2 [KO:K07830]
125983016  ras-related protein R-Ras [KO:K07830]
125989059  transcription factor E2F1 [KO:K17454]
125990887  endothelial PAS domain-containing protein 1-like isoform X1 [KO:K08268]
125972501  hypoxia inducible factor 1 subunit alpha, like [KO:K08268]
125981380  hypoxia inducible factor 1 subunit alpha a [KO:K08268]
125977882  transcription factor Sp1 isoform X1 [KO:K04684]
125990249  cellular tumor antigen p53 [KO:K04451]
125990634  forkhead box protein O3B [KO:K09408]
125981004  forkhead box protein O3a [KO:K09408]
125989302  microphthalmia-associated transcription factor-like isoform X1 [KO:K09455]
125977360  microphthalmia-associated transcription factor-like isoform X1 [KO:K09455]
125977421  transcription factor EB isoform X1 [KO:K15590]
125989508  transcription factor E3a [KO:K09105]
125977215  transcription factor E3b isoform X1 [KO:K09105]
125972141  RAB guanine nucleotide exchange factor (GEF) 1, like isoform X1 [KO:K20131]
125994343  rab5 GDP/GTP exchange factor-like [KO:K20131]
125981895  rab5 GDP/GTP exchange factor [KO:K20131]
125974838  RAB5A, member RAS oncogene family, b [KO:K07887]
125974077  ras-related protein Rab-5B [KO:K07888]
125983329  ras-related protein Rab-5C [KO:K07889]
125991530  ras-related protein Rab-5C-like [KO:K07889]
125977187  vacuolar fusion protein MON1 homolog A [KO:K20195]
125977489  vacuolar fusion protein MON1 homolog B-like isoform X1 [KO:K20195]
125991568  vacuolar fusion protein CCZ1 homolog [KO:K27045]
125976790  ras-related protein Rab-7a [KO:K07897]
125977817  ras-related protein rab7-like [KO:K07897]
125970105  TBC1 domain family member 15 isoform X1 [KO:K20168]
125983781  TBC1 domain family member 17 [KO:K19945]
125979150  mitochondrial fission 1 protein isoform X1 [KO:K17969]
125984777  autophagy-related protein 9B [KO:K17907]
125980976  autophagy-related protein 9A isoform X1 [KO:K17907]
125966459  dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
125993610  transitional endoplasmic reticulum ATPase [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
sscv04140  Autophagy - animal
sscv04210  Apoptosis
KO pathway
ko04137   
LinkDB

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