KEGG   PATHWAY: csab04623
Entry
csab04623                   Pathway                                
Name
Cytosolic DNA-sensing pathway - Chlorocebus sabaeus (green monkey)
Description
Specific families of pattern recognition receptors are responsible for detecting foreign DNA from invading microbes or host cells and generating innate immune responses. DAI is the first identified sensor of cytosolic DNA which activates the IRF and NF-{kappa}B transcription factors, leading to production of type I interferon and other cytokines. The second type of cytoplasmic DNA sensor is AIM2. Upon sensing DNA, AIM2 triggers the assembly of the inflammasome, culminating in interleukin maturation. In addition to these receptors, there is a mechanism to sense foreign DNA, with the host RNA polymerase III converting the DNA into RNA for recognition by the RNA sensor RIG-I. These pathways provide various means to alert the cell.
Class
Organismal Systems; Immune system
Pathway map
csab04623  Cytosolic DNA-sensing pathway
csab04623

Organism
Chlorocebus sabaeus (green monkey) [GN:csab]
Gene
103214895  POLR3F; RNA polymerase III subunit F [KO:K03025]
103214912  [KO:K20027] [EC:2.3.1.225]
103215450  POLR3D; RNA polymerase III subunit D [KO:K03026]
103215686  IKBKB; inhibitor of nuclear factor kappa B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
103215945  POLR3A; RNA polymerase III subunit A [KO:K03018] [EC:2.7.7.6]
103216382  CHUK; conserved helix-loop-helix ubiquitous kinase [KO:K04467] [EC:2.7.11.10]
103216537  CASP7; caspase 7 [KO:K04397] [EC:3.4.22.60]
103216548  SAMHD1; SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 [KO:K22544] [EC:3.1.5.-]
103217637  CASP8; caspase 8 [KO:K04398] [EC:3.4.22.61]
103219311  DDX58; DExD/H-box helicase 58 [KO:K12646] [EC:3.6.4.13]
103219366  [KO:K05414]
103219367  IFNA8; interferon alpha 8 [KO:K05414]
103219368  IFNA2; interferon alpha 2 [KO:K05414]
103219370  [KO:K05414]
103219372  [KO:K05414]
103219377  [KO:K05414]
103219378  [KO:K05414]
103219379  [KO:K05414]
103219381  [KO:K05414]
103219383  IFNB1; interferon beta 1 [KO:K05415]
103219472  IL33; interleukin 33 [KO:K12967]
103220098  PCBP1; poly(rC) binding protein 1 [KO:K12889]
103221131  POLR2H; RNA polymerase II subunit H [KO:K03016]
103221460  POLR1C; RNA polymerase I subunit C [KO:K03027]
103222283  RIPK1; receptor interacting serine/threonine kinase 1 [KO:K02861] [EC:2.7.11.1]
103223297  POLR2F; RNA polymerase II subunit F [KO:K03014]
103223380  POLR3H; RNA polymerase III subunit H [KO:K03022]
103223764  AIM2; absent in melanoma 2 [KO:K12966]
103223767  IFI16; interferon gamma inducible protein 16 [KO:K20914]
103223917  ADAR; adenosine deaminase, RNA specific [KO:K12968] [EC:3.5.4.37]
103224061  POLR3GL; RNA polymerase III subunit G like [KO:K03024]
103224067  POLR3C; RNA polymerase III subunit C [KO:K03023]
103224475  POLR3G; RNA polymerase III subunit G [KO:K03024]
103224537  DNASE2B; deoxyribonuclease 2 beta [KO:K01158] [EC:3.1.22.1]
103225212  POLR3K; RNA polymerase III subunit K [KO:K03019]
103226003  IRF7; interferon regulatory factor 7 [KO:K09447]
103226364  DFNA5; DFNA5, deafness associated tumor suppressor [KO:K22146]
103226390  IL6; interleukin 6 [KO:K05405]
103227338  MEFV; MEFV, pyrin innate immunity regulator [KO:K12803]
103227364  RELA; RELA proto-oncogene, NF-kB subunit [KO:K04735]
103227588  TREX1; three prime repair exonuclease 1 [KO:K10790] [EC:3.1.11.2]
103228724  RIPK3; receptor interacting serine/threonine kinase 3 [KO:K08847] [EC:2.7.11.1]
103228823  NFKBIA; NFKB inhibitor alpha [KO:K04734]
103229604  POLR3E; RNA polymerase III subunit E [KO:K14721]
103230198  IKBKE; inhibitor of nuclear factor kappa B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
103230928  NLRP3; NLR family pyrin domain containing 3 [KO:K12800]
103231357  [KO:K12799]
103232832  IKBKG; inhibitor of nuclear factor kappa B kinase subunit gamma [KO:K07210]
103233145  MLKL; mixed lineage kinase domain like pseudokinase [KO:K08849] [EC:2.7.11.1]
103233276  ZDHHC1; zinc finger DHHC-type containing 1 [KO:K20027] [EC:2.3.1.225]
103233592  POLR2E; RNA polymerase II subunit E [KO:K03013]
103234370  DNASE2; deoxyribonuclease 2, lysosomal [KO:K01158] [EC:3.1.22.1]
103234512  POLR2L; RNA polymerase II subunit L [KO:K03007]
103234643  NFKBIB; NFKB inhibitor beta [KO:K02581]
103235050  IRF3; interferon regulatory factor 3 [KO:K05411]
103235824  CXCL10; C-X-C motif chemokine ligand 10 [KO:K12671]
103236047  NFKB1; nuclear factor kappa B subunit 1 [KO:K02580]
103236614  CASP3; caspase 3 [KO:K02187] [EC:3.4.22.56]
103237210  POLR2K; RNA polymerase II subunit K [KO:K03009]
103237567  GSDMD; gasdermin D [KO:K20917]
103238638  TBK1; TANK binding kinase 1 [KO:K05410] [EC:2.7.11.10]
103239031  POLR3B; RNA polymerase III subunit B [KO:K03021] [EC:2.7.7.6]
103241278  IL1B; interleukin 1 beta [KO:K04519]
103242750  CCL5; C-C motif chemokine ligand 5 [KO:K12499]
103242764  [KO:K12964]
103242769  [KO:K12964]
103243695  ZBP1; Z-DNA binding protein 1 [KO:K12965]
103243898  MB21D1; Mab-21 domain containing 1 [KO:K17834] [EC:2.7.7.86]
103244640  TMEM173; transmembrane protein 173 [KO:K12654]
103244817  G3BP1; G3BP stress granule assembly factor 1 [KO:K17265] [EC:5.6.2.3 3.6.4.13]
103245058  DDX41; DEAD-box helicase 41 [KO:K13116] [EC:3.6.4.13]
103245758  FADD; Fas associated via death domain [KO:K02373]
103247611  MAVS; mitochondrial antiviral signaling protein [KO:K12648]
103247731  ZCCHC3; zinc finger CCHC-type containing 3 [KO:K27162]
103247783  [KO:K12964]
103248363  [KO:K01370] [EC:3.4.22.36]
103248365  CASP1; caspase 1 [KO:K01370] [EC:3.4.22.36]
103248464  IL18; interleukin 18 [KO:K05482]
103248933  [KO:K01370] [EC:3.4.22.36]
103249062  [KO:K03020]
Compound
C00039  DNA
C20640  Cyclic GMP-AMP
Reference
  Authors
Yanai H, Savitsky D, Tamura T, Taniguchi T
  Title
Regulation of the cytosolic DNA-sensing system in innate immunity: a current view.
  Journal
Curr Opin Immunol 21:17-22 (2009)
DOI:10.1016/j.coi.2009.01.005
Reference
  Authors
Vilaysane A, Muruve DA
  Title
The innate immune response to DNA.
  Journal
Semin Immunol 21:208-14 (2009)
DOI:10.1016/j.smim.2009.05.006
Reference
  Authors
Takeshita F, Ishii KJ
  Title
Intracellular DNA sensors in immunity.
  Journal
Curr Opin Immunol 20:383-8 (2008)
DOI:10.1016/j.coi.2008.05.009
Reference
  Authors
Takaoka A, Shinohara S
  Title
DNA sensors in innate immune system.
  Journal
Uirusu 58:37-46 (2008)
DOI:10.2222/jsv.58.37
Reference
  Authors
Takaoka A, Taniguchi T
  Title
Cytosolic DNA recognition for triggering innate immune responses.
  Journal
Adv Drug Deliv Rev 60:847-57 (2008)
DOI:10.1016/j.addr.2007.12.002
Reference
  Authors
Kaiser WJ, Upton JW, Mocarski ES
  Title
Receptor-interacting protein homotypic interaction motif-dependent control of NF-kappa B activation via the DNA-dependent activator of IFN regulatory factors.
  Journal
J Immunol 181:6427-34 (2008)
DOI:10.4049/jimmunol.181.9.6427
Reference
  Authors
Rebsamen M, Heinz LX, Meylan E, Michallet MC, Schroder K, Hofmann K, Vazquez J, Benedict CA, Tschopp J
  Title
DAI/ZBP1 recruits RIP1 and RIP3 through RIP homotypic interaction motifs to activate NF-kappaB.
  Journal
EMBO Rep 10:916-22 (2009)
DOI:10.1038/embor.2009.109
Reference
  Authors
Wang Z, Choi MK, Ban T, Yanai H, Negishi H, Lu Y, Tamura T, Takaoka A, Nishikura K, Taniguchi T
  Title
Regulation of innate immune responses by DAI (DLM-1/ZBP1) and other DNA-sensing molecules.
  Journal
Proc Natl Acad Sci U S A 105:5477-82 (2008)
DOI:10.1073/pnas.0801295105
Reference
  Authors
Stetson DB, Ko JS, Heidmann T, Medzhitov R
  Title
Trex1 prevents cell-intrinsic initiation of autoimmunity.
  Journal
Cell 134:587-98 (2008)
DOI:10.1016/j.cell.2008.06.032
Reference
  Authors
Schroder K, Muruve DA, Tschopp J
  Title
Innate immunity: cytoplasmic DNA sensing by the AIM2 inflammasome.
  Journal
Curr Biol 19:R262-5 (2009)
DOI:10.1016/j.cub.2009.02.011
Reference
  Authors
Krieg AM
  Title
AIMing 2 detect foreign DNA.
  Journal
Sci Signal 2:pe39 (2009)
DOI:10.1126/scisignal.277pe39
Reference
  Authors
O'Neill LA
  Title
DNA makes RNA makes innate immunity.
  Journal
Cell 138:428-30 (2009)
DOI:10.1016/j.cell.2009.07.021
Reference
  Authors
Ishii KJ, Coban C, Kato H, Takahashi K, Torii Y, Takeshita F, Ludwig H, Sutter G, Suzuki K, Hemmi H, Sato S, Yamamoto M, Uematsu S, Kawai T, Takeuchi O, Akira S
  Title
A Toll-like receptor-independent antiviral response induced by double-stranded B-form DNA.
  Journal
Nat Immunol 7:40-8 (2006)
DOI:10.1038/ni1282
Reference
  Authors
Cao X
  Title
New DNA-sensing pathway feeds RIG-I with RNA.
  Journal
Nat Immunol 10:1049-51 (2009)
DOI:10.1038/ni1009-1049
Reference
  Authors
Sun L, Wu J, Du F, Chen X, Chen ZJ
  Title
Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway.
  Journal
Science 339:786-91 (2013)
DOI:10.1126/science.1232458
Reference
  Authors
Gao M, He Y, Tang H, Chen X, Liu S, Tao Y
  Title
cGAS/STING: novel perspectives of the classic pathway.
  Journal
Mol Biomed 1:7 (2020)
DOI:10.1186/s43556-020-00006-z
Reference
  Authors
Benjamin P, Sudhakar S, D'Arco F, Lobel U, Carney O, Roux CJ, Boddaert N, Hemingway C, Eleftheriou D, Mankad K
  Title
Spectrum of Neuroradiologic Findings Associated with Monogenic Interferonopathies.
  Journal
AJNR Am J Neuroradiol 43:2-10 (2022)
DOI:10.3174/ajnr.A7362
Reference
  Authors
Place DE, Lee S, Kanneganti TD
  Title
PANoptosis in microbial infection.
  Journal
Curr Opin Microbiol 59:42-49 (2021)
DOI:10.1016/j.mib.2020.07.012
Reference
  Authors
Jiang W, Deng Z, Dai X, Zhao W
  Title
PANoptosis: A New Insight Into Oral Infectious Diseases.
  Journal
Front Immunol 12:789610 (2021)
DOI:10.3389/fimmu.2021.789610
Reference
  Authors
Wang Y, Kanneganti TD
  Title
From pyroptosis, apoptosis and necroptosis to PANoptosis: A mechanistic compendium of programmed cell death pathways.
  Journal
Comput Struct Biotechnol J 19:4641-4657 (2021)
DOI:10.1016/j.csbj.2021.07.038
Related
pathway
csab04064  NF-kappa B signaling pathway
csab04120  Ubiquitin mediated proteolysis
csab04210  Apoptosis
csab04217  Necroptosis
csab04621  NOD-like receptor signaling pathway
csab04622  RIG-I-like receptor signaling pathway
KO pathway
ko04623   

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