KEGG   PATHWAY: kmr04120
Entry
kmr04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Kryptolebias marmoratus (mangrove rivulus)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
kmr04120  Ubiquitin mediated proteolysis
kmr04120

Other DBs
GO: 0016567
Organism
Kryptolebias marmoratus (mangrove rivulus) [GN:kmr]
Gene
108228210  herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
108228298  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
108228324  [KO:K06689] [EC:2.3.2.23]
108228375  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
108228591  skp2; S-phase kinase-associated protein 2 isoform X2 [KO:K03875]
108228801  [KO:K20217] [EC:2.3.2.23]
108229081  nedd4a; E3 ubiquitin-protein ligase NEDD4a isoform X1 [KO:K10591] [EC:2.3.2.26]
108229416  ube2m; NEDD8-conjugating enzyme Ubc12 isoform X1 [KO:K10579] [EC:2.3.2.34]
108229592  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
108229807  cul4a; cullin-4A [KO:K10609]
108229849  pias1b; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
108230172  [KO:K10582] [EC:2.3.2.23]
108230198  ddb2; DNA damage-binding protein 2 [KO:K10140]
108230253  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
108230264  flj11011l; probable ubiquitin-conjugating enzyme E2 W-B [KO:K10688] [EC:2.3.2.23 2.3.2.25]
108230316  eloca; elongin C paralog a [KO:K03872]
108230849  cdc34a; cell division cycle 34 homolog (S. cerevisiae) a isoform X2 [KO:K02207] [EC:2.3.2.23]
108230852  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
108230957  fbxw7; F-box/WD repeat-containing protein 7 isoform X2 [KO:K10260]
108230988  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
108230991  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
108230994  [KO:K10594] [EC:2.3.2.26]
108231084  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
108231146  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
108231167  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
108231206  ube2a; ubiquitin-conjugating enzyme E2 A isoform X1 [KO:K10573] [EC:2.3.2.23]
108231438  cul4b; cullin-4B [KO:K10609]
108231686  itcha; itchy E3 ubiquitin protein ligase a [KO:K05632] [EC:2.3.2.26]
108231938  [KO:K10686] [EC:6.2.1.64]
108232145  keap1a; kelch-like ECH-associated protein 1A isoform X1 [KO:K10456]
108232381  ube2al; ubiquitin conjugating enzyme E2 A, like [KO:K10573] [EC:2.3.2.23]
108232514  cdc16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
108233117  itchb; itchy E3 ubiquitin protein ligase b isoform X1 [KO:K05632] [EC:2.3.2.26]
108233598  ubox5; RING finger protein 37 [KO:K10600]
108233867  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
108234195  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
108234269  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
108234627  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
108234789  ddb1; DNA damage-binding protein 1 [KO:K10610]
108234801  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
108234884  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
108234888  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
108234915  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
108235011  ube2g1b; ubiquitin-conjugating enzyme E2G 1b [KO:K10575] [EC:2.3.2.23]
108235081  ube2nb; ubiquitin-conjugating enzyme E2Nb [KO:K10580] [EC:2.3.2.23]
108235097  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
108235191  birc7; baculoviral IAP repeat-containing protein 7 isoform X2 [KO:K16061]
108235255  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
108235354  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
108235488  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
108235772  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
108236134  smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
108236169  socs1a; suppressor of cytokine signaling 1a [KO:K04694]
108236172  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
108236207  [KO:K10577]
108236247  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
108236573  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
108236574  [KO:K07868]
108236828  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
108236873  cdc23; cell division cycle protein 23 homolog [KO:K03355]
108237026  birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
108237213  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
108237258  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
108237465  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
108237701  elob; elongin-B [KO:K03873]
108237844  [KO:K04706] [EC:2.3.2.-]
108237932  [KO:K04725] [EC:2.3.2.27]
108237978  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
108238075  skp1; S-phase kinase-associated protein 1 [KO:K03094]
108238085  [KO:K04707] [EC:2.3.2.27]
108238099  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
108238104  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
108238293  fzr1b; fizzy-related protein homolog isoform X1 [KO:K03364]
108238496  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
108238573  cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
108238722  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
108239155  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
108239469  fzr1a; fizzy/cell division cycle 20 related 1a [KO:K03364]
108239558  [KO:K02207] [EC:2.3.2.23]
108239605  cdc20; cell division cycle protein 20 homolog [KO:K03363]
108239629  aire; autoimmune regulator [KO:K10603]
108239704  mid1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
108239818  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
108239890  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
108239908  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
108239991  [KO:K10576] [EC:2.3.2.23]
108240152  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
108240190  herc2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
108240218  ube3a; ubiquitin-protein ligase E3A isoform X2 [KO:K10587] [EC:2.3.2.26]
108240244  [KO:K10582] [EC:2.3.2.23]
108240314  fbxo2; F-box only protein 2 [KO:K10099]
108240459  rnf7; RING-box protein 2 [KO:K10611]
108240480  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
108240497  cul3b; cullin-3b [KO:K03869]
108240692  herc4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
108241173  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
108241253  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
108241897  [KO:K10587] [EC:2.3.2.26]
108241931  [KO:K10602] [EC:2.3.2.27]
108242323  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
108242388  fbxw11a; F-box/WD repeat-containing protein 11a isoform X2 [KO:K03362]
108242417  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
108242687  [KO:K06689] [EC:2.3.2.23]
108242833  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
108243179  cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
108243292  ube2e2; ubiquitin-conjugating enzyme E2 E2 isoform X2 [KO:K20217] [EC:2.3.2.23]
108243302  [KO:K20217] [EC:2.3.2.23]
108243738  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
108244051  birc6; baculoviral IAP repeat-containing protein 6 isoform X4 [KO:K10586] [EC:2.3.2.23]
108244172  si:rp71-68n21.9; kelch-like protein 9 [KO:K10447]
108244316  [KO:K08285] [EC:2.3.2.27]
108244352  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
108244548  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
108244591  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
108244799  fbxo4; F-box only protein 4 isoform X1 [KO:K10291]
108244809  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
108245195  cul2; cullin-2 isoform X2 [KO:K03870]
108245241  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
108245364  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
108245383  [KO:K04552] [EC:2.3.2.23]
108245539  [KO:K03869]
108245543  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
108246036  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
108246038  cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
108246090  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
108246246  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
108246316  socs3b; suppressor of cytokine signaling 3b [KO:K04696]
108246600  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
108246763  [KO:K10605] [EC:2.3.2.27]
108246895  herc5.1; probable E3 ubiquitin-protein ligase HERC4 [KO:K10614] [EC:2.3.2.26]
108246945  fbxw8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
108247228  [KO:K04678] [EC:2.3.2.26]
108247878  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
108248128  [KO:K20217] [EC:2.3.2.23]
108248146  [KO:K10612]
108248224  [KO:K03358]
108248232  [KO:K03358]
108248254  [KO:K05633] [EC:2.3.2.26]
108248341  [KO:K04552] [EC:2.3.2.23]
108248345  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
108248743  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
108248778  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O isoform X1 [KO:K10581] [EC:2.3.2.24]
108248946  [KO:K10612]
108249128  anapc2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
108249162  [KO:K10260]
108249167  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
108249552  [KO:K03347]
108249644  mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
108249767  [KO:K03873]
108250079  det1; DET1 homolog [KO:K10571]
108250185  uba2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
108250423  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
108250426  [KO:K04694]
108250722  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
108250822  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
108251327  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
108251675  [KO:K06689] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
kmr03050  Proteasome
KO pathway
ko04120   

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