KEGG   PATHWAY: mpah04120
Entry
mpah04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Mus pahari (shrew mouse)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mpah04120  Ubiquitin mediated proteolysis
mpah04120

Other DBs
GO: 0016567
Organism
Mus pahari (shrew mouse) [GN:mpah]
Gene
110312823  Fbxw8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
110312851  Ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
110313033  Uba2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
110313144  Anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
110313293  Mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
110313410  Klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
110313493  Cul4b; cullin-4B [KO:K10609]
110313504  Ube2a; ubiquitin-conjugating enzyme E2 A isoform X1 [KO:K10573] [EC:2.3.2.23]
110313538  Xiap; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
110313641  [KO:K06689] [EC:2.3.2.23]
110313835  [KO:K04506] [EC:2.3.2.27]
110314009  [KO:K06689] [EC:2.3.2.23]
110314013  [KO:K10582] [EC:2.3.2.23]
110314052  Uba1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
110314055  Huwe1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
110314225  Uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
110315905  Herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
110316017  Ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
110316251  Cul1; cullin-1 [KO:K03347]
110316397  Ube2h; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
110316534  Anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
110316544  [KO:K06689] [EC:2.3.2.23]
110316548  Vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
110317087  Prpf19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
110317579  Itch; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
110317654  Ube2e3; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
110318008  Anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
110318382  Traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
110318389  [KO:K02977]
110318409  [KO:K03872]
110318457  Anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
110318483  [KO:K02977]
110318832  Ubox5; RING finger protein 37 [KO:K10600]
110318837  Ube2c; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
110318922  Ube2l6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
110319542  Birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
110319597  Ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
110319790  Ube2d3; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
110319879  Pias3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
110319986  Fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
110320057  Ube2q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
110321212  Cul3; cullin-3 isoform X1 [KO:K03869]
110321321  Syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
110321569  [KO:K03872]
110321719  Ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
110321877  [KO:K16060]
110322641  Rfwd2; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
110322670  Trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
110322771  Cdc20; cell division cycle protein 20 homolog [KO:K03363]
110322777  Ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
110322831  [KO:K02927]
110323130  Ube2j2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
110323225  [KO:K02927]
110323396  Klhl9; kelch-like protein 9 [KO:K10447]
110323594  Cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
110323621  Fbxo2; F-box only protein 2 [KO:K10099]
110323818  Ube2u; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
110323957  Trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
110324792  [KO:K10687] [EC:2.3.2.34]
110324933  Det1; DET1 homolog [KO:K10571]
110325408  [KO:K20217] [EC:2.3.2.23]
110325492  Ube2e1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
110325494  Rhobtb2; rho-related BTB domain-containing protein 2 [KO:K07868]
110325900  [KO:K06688] [EC:2.3.2.23]
110326218  Fzr1; fizzy-related protein homolog isoform X1 [KO:K03364]
110326244  Aire; autoimmune regulator isoform X1 [KO:K10603]
110326261  Herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
110326282  Rhobtb1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
110326312  Cdc34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
110326368  Pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
110326369  Ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
110326372  Ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
110326413  Anapc16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
110326473  Mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
110326535  Ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
110326564  Ube2d1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
110327300  Nedd4; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
110327437  Pias1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
110327453  Cul5; cullin-5 isoform X1 [KO:K10612]
110327467  Anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
110327576  [KO:K16060]
110327640  Cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
110327720  Ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
110327787  Keap1; kelch-like ECH-associated protein 1 [KO:K10456]
110327792  Ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
110327943  Pml; protein PML [KO:K10054] [EC:2.3.2.-]
110328081  [KO:K16060]
110328103  [KO:K10580] [EC:2.3.2.23]
110328299  [KO:K02927]
110328308  Rnf7; RING-box protein 2 isoform X1 [KO:K10611]
110328374  Herc1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
110328537  Uba7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
110328573  [KO:K10687] [EC:2.3.2.34]
110328844  Skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
110328943  Ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
110328949  Map3k1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
110329012  Ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
110329053  Fbxo4; F-box only protein 4 [KO:K10291]
110329314  Mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
110329402  Ppil2; peptidyl-prolyl cis-trans isomerase-like 2 isoform X1 [KO:K10598] [EC:5.2.1.8]
110329647  Ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
110329809  Socs1; suppressor of cytokine signaling 1 [KO:K04694]
110330092  Cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
110330213  Fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
110330224  Ube2d4; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
110330267  Uba6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
110330429  Ube2k; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
110330495  Rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
110330576  Rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
110330589  [KO:K06689] [EC:2.3.2.23]
110331043  Anapc4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
110331061  Fbxw11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
110331180  Brca1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
110331264  Smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
110331459  Cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
110331513  Trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
110331531  [KO:K02927]
110331651  [KO:K02927]
110331669  Ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
110331774  Skp1; S-phase kinase-associated protein 1 [KO:K03094]
110332039  Ddb1; DNA damage-binding protein 1 [KO:K10610]
110332081  Ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
110332089  Ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
110332093  Ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
110332146  Socs3; suppressor of cytokine signaling 3 [KO:K04696]
110332424  Anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
110332894  Ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
110332895  Pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
110333139  Nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
110333212  Cdc23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
110333450  Cul2; cullin-2 isoform X1 [KO:K03870]
110334150  Nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
110334876  Ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
110334961  Rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
110335441  Cul7; cullin-7 [KO:K10613]
110335497  Birc6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
110336313  Cul4a; cullin-4A [KO:K10609]
110336445  Sae1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
110336512  Ube2m; NEDD8-conjugating enzyme Ubc12 isoform X1 [KO:K10579] [EC:2.3.2.34]
110336635  Ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
110336738  Uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
110336759  [KO:K10595] [EC:2.3.2.26]
110336947  Cdc16; cell division cycle protein 16 homolog [KO:K03353]
110337011  Cblc; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
110337437  Siah1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
110337550  Anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
110337633  Wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
110337935  Elob; elongin-B [KO:K03873]
110337956  Btrc; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
110338038  Ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
110338080  Prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
110338088  Stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
110338331  [KO:K25228]
110338628  Wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
110338682  Ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
110338770  Ube2w; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
110338773  Ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
110339002  Eloc; LOW QUALITY PROTEIN: elongin-C [KO:K03872]
110339048  Anapc5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
110339179  Smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mpah03050  Proteasome
KO pathway
ko04120   

DBGET integrated database retrieval system