KEGG   PATHWAY: osa03430
Entry
osa03430                    Pathway                                
Name
Mismatch repair - Oryza sativa japonica (Japanese rice)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
osa03430  Mismatch repair
osa03430

Other DBs
GO: 0006298
Organism
Oryza sativa japonica (Japanese rice) [GN:osa]
Gene
4337429  uncharacterized protein [KO:K07456]
4326564  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
4329835  DNA mismatch repair protein PMS1 [KO:K10858]
4325393  DNA mismatch repair protein MLH1 [KO:K08734]
4347016  DNA mismatch repair protein MSH6 [KO:K08737]
4325353  DNA mismatch repair protein MSH7 isoform X1 [KO:K08737]
4338271  DNA mismatch repair protein MSH2 [KO:K08735]
4337442  DNA mismatch repair protein MSH3 isoform X1 [KO:K08736]
4350754  OsRFC1; replication factor C subunit 1 [KO:K10754]
4351654  OsJ_35406; replication factor C subunit 2 [KO:K10755]
4336704  OsRFC4; replication factor C subunit 4 [KO:K10755]
4330895  OsRFC3; replication factor C subunit 3 [KO:K10756]
4334389  OsJ_12910; replication factor C subunit 5 [KO:K10756]
4349480  replication factor C subunit 3 [KO:K10756]
4331062  Cyclin; proliferating cell nuclear antigen [KO:K04802]
4327899  EXO-1; exonuclease 1 [KO:K10746] [EC:3.1.-.-]
4337594  OsJ_16860; replication protein A 70 kDa DNA-binding subunit C [KO:K07466]
4330902  OsJ_08582; replication protein A 70 kDa DNA-binding subunit A [KO:K07466]
4332052  OsJ_09906; replication protein A 70 kDa DNA-binding subunit B [KO:K07466]
4331236  OsJ_08977; replication protein A 32 kDa subunit A [KO:K10739]
4330068  OsRPA32-2; replication protein A 32 kDa subunit B [KO:K10739]
4327706  OsJ_01130; replication protein A 14 kDa subunit isoform X2 [KO:K10740]
4349968  OspolD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
4331489  OJ1528D07.1; DNA polymerase delta small subunit [KO:K02328]
4327080  uncharacterized protein [KO:K03504]
4347604  P0669G04.6; uncharacterized LOC4347604 [KO:K03505]
4344737  uncharacterized protein [KO:K03505]
112936215  uncharacterized protein [KO:K03505]
4348965  DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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