KEGG   PATHWAY: bpec04820
Entry
bpec04820                   Pathway                                
Name
Cytoskeleton in muscle cells - Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Class
Cellular Processes; Cell motility
Pathway map
bpec04820  Cytoskeleton in muscle cells
bpec04820

Organism
Boleophthalmus pectinirostris (great blue-spotted mudskipper) [GN:bpec]
Gene
110162385  collagen alpha-1(I) chain-like isoform X1 [KO:K06236]
110154336  collagen alpha-1(I) chain-like [KO:K06236]
110174114  col1a2; collagen alpha-2(I) chain [KO:K06236]
110175839  collagen alpha-2(V) chain-like [KO:K19721]
110153471  collagen alpha-1(XI) chain-like [KO:K19721]
110175624  collagen alpha-2(V) chain-like [KO:K19721]
110173273  collagen alpha-2(XI) chain-like [KO:K19721]
110153532  collagen alpha-1(XI) chain-like [KO:K19721]
110157411  col27a1; collagen alpha-1(XXVII) chain [KO:K19721]
110157491  collagen alpha-1(XI) chain-like [KO:K19721]
110164290  collagen alpha-1(I) chain-like [KO:K19721]
110155018  collagen alpha-1(XXVII) chain B-like [KO:K19721]
110165300  col11a1; LOW QUALITY PROTEIN: collagen alpha-1(XI) chain [KO:K19721]
110168712  collagen alpha-1(XI) chain-like [KO:K19721]
110172254  col24a1; collagen alpha-1(XXIV) chain [KO:K19721]
110157118  col9a1; collagen alpha-1(IX) chain [KO:K08131]
110164732  col9a3; collagen alpha-3(IX) chain [KO:K08131]
110164363  collagen alpha-1(IX) chain-like [KO:K08131]
110167304  collagen alpha-1(IX) chain-like [KO:K08131]
110167327  col9a2; collagen alpha-2(IX) chain [KO:K08131]
110161853  decorin-like [KO:K04660]
110154076  eln; elastin [KO:K14211]
110160762  collagen alpha-3(VI) chain-like [KO:K06238]
110166521  collagen alpha-2(VI) chain-like isoform X1 [KO:K06238]
110170466  col6a2; collagen alpha-2(VI) chain isoform X1 [KO:K06238]
110170467  col6a1; collagen alpha-1(VI) chain [KO:K06238]
110158189  col6a3; collagen alpha-3(VI) chain [KO:K06238]
110153401  collagen alpha-4(VI) chain-like [KO:K06238]
110155241  thrombospondin-1-like [KO:K16857]
110172375  thrombospondin-1-like [KO:K16857]
110157347  thrombospondin-4-B-like [KO:K04659]
110174600  thrombospondin-2-like [KO:K04659]
110157882  thbs3; thrombospondin-3 [KO:K04659]
110156952  thbs2; thrombospondin-2 [KO:K04659]
110167973  comp; cartilage oligomeric matrix protein [KO:K04659]
110156670  thrombospondin-4-B-like isoform X1 [KO:K04659]
110172925  fbn1; fibrillin-1 [KO:K06825]
110160066  fibrillin-2-like isoform X1 [KO:K23342]
110173190  col4a2; collagen alpha-2(IV) chain isoform X1 [KO:K06237]
110173192  col4a1; collagen alpha-1(IV) chain [KO:K06237]
110173582  collagen alpha-1(I) chain-like [KO:K06237]
110158306  col4a5; collagen alpha-5(IV) chain [KO:K06237]
110158307  collagen alpha-6(IV) chain-like [KO:K06237]
110164458  fibulin-2-like [KO:K17307]
110169369  fibulin-1-like isoform X1 [KO:K17307]
110171139  fibulin-2-like [KO:K17307]
110165025  fbln1; fibulin-1 [KO:K17307]
110159404  hspg2; basement membrane-specific heparan sulfate proteoglycan core protein [KO:K06255]
110153199  nid2; nidogen-2 [KO:K06826]
110156812  nid1; nidogen-1 [KO:K06826]
110174770  nidogen-1-like [KO:K06826]
110172841  fibronectin-like isoform X1 [KO:K05717]
110156167  fibronectin-like isoform X1 [KO:K05717]
110173936  syndecan-1-like [KO:K06257]
110171795  syndecan-2-like [KO:K16336]
110173321  syndecan-2-A-like [KO:K16336]
110167378  sdc3; syndecan-3 [KO:K16337]
110171165  syndecan-4-like isoform X1 [KO:K16338]
110158079  agrn; agrin [KO:K06254]
110164638  bgn; biglycan [KO:K08118]
110158350  dsc2; desmocollin-2 [KO:K07601]
110157533  desmoglein-2-like [KO:K07597]
110154912  desmoglein-2-like [KO:K07597]
110161214  desmoglein-2-like [KO:K07597]
110161232  desmoglein-3-like [KO:K07597]
110161243  desmoglein-3-like [KO:K07597]
110161804  pkp2; plakophilin-2 [KO:K12642]
110175669  junction plakoglobin-like [KO:K10056]
110167741  junction plakoglobin-like [KO:K10056]
110158163  dsp; desmoplakin [KO:K10381]
110159005  peripherin-like [KO:K07606]
110164079  vimentin-like [KO:K07606]
110168363  desmin-like [KO:K07606]
110159961  desmin-like isoform X1 [KO:K07610]
110156398  lama2; laminin subunit alpha-2 [KO:K05637]
110175641  lama1; laminin subunit alpha-1 [KO:K05637]
110157451  itga1; integrin alpha-1 [KO:K06480]
110172107  itga2; integrin alpha-2 [KO:K06481]
110159597  itga3; integrin alpha-3 [KO:K06482]
110161223  integrin alpha-3-like [KO:K06482]
110164214  itga4; integrin alpha-4 [KO:K06483]
110164578  integrin alpha-5-like [KO:K06484]
110165784  integrin alpha-5-like [KO:K06484]
110159061  integrin alpha-6-like [KO:K06485]
110166566  itga6; integrin alpha-6 [KO:K06485]
110173387  integrin alpha-6-like [KO:K06485]
110168424  itga7; integrin alpha-7 [KO:K06583]
110171606  itga8; integrin alpha-8 [KO:K06584]
110157152  itga9; integrin alpha-9 [KO:K06585]
110163030  itga10; integrin alpha-10 [KO:K06586]
110159373  integrin alpha-11-like [KO:K06587]
110174538  itga11; integrin alpha-11 [KO:K06587]
110162930  itgav; integrin alpha-V [KO:K06487]
110165515  itgb1; integrin beta-1 [KO:K05719]
110161461  integrin beta-3-like [KO:K06493]
110154280  itgb3; integrin beta-3 [KO:K06493]
110155181  itgb4; integrin beta-4 [KO:K06525]
110170582  itgb5; integrin beta-5 [KO:K06588]
110172827  itgb6; integrin beta-6 [KO:K06589]
110167428  itgb8; integrin beta-8 [KO:K06591]
110175208  talin-2 [KO:K06271]
110156536  talin-2-like [KO:K06271]
110161597  LOW QUALITY PROTEIN: talin-1-like [KO:K06271]
110160419  vinculin [KO:K05700]
110157168  vinculin-like [KO:K05700]
110170798  actn3; alpha-actinin-3 [KO:K21073]
110157250  actn2; alpha-actinin-2 [KO:K21073]
110162397  actb; actin, cytoplasmic 1 isoform X1 [KO:K05692]
110153521  actin, cytoplasmic 1 [KO:K05692]
110157935  LOW QUALITY PROTEIN: dystroglycan-like [KO:K06265]
110171127  dag1; dystroglycan [KO:K06265]
110154335  alpha-sarcoglycan-like [KO:K12565]
110171388  sgce; LOW QUALITY PROTEIN: epsilon-sarcoglycan [KO:K27061]
110154841  sgcb; beta-sarcoglycan [KO:K12566]
110156445  sgcd; delta-sarcoglycan [KO:K12563]
110171899  sgcg; gamma-sarcoglycan [KO:K12564]
110166247  sgcz; zeta-sarcoglycan [KO:K27062]
110170748  zeta-sarcoglycan-like [KO:K27062]
110170287  sspn; sarcospan [KO:K22194]
110153312  dmd; dystrophin [KO:K10366]
110173760  snta1; alpha-1-syntrophin [KO:K24063]
110171580  sntb1; beta-1-syntrophin [KO:K24064]
110169173  sntb2; beta-2-syntrophin [KO:K24064]
110157301  dtna; dystrobrevin alpha [KO:K26998]
110161376  flnc; filamin-C [KO:K27393]
110169294  filamin-C-like [KO:K27393]
110170895  sodium/potassium-transporting ATPase subunit alpha-1-like [KO:K01539] [EC:7.2.2.13]
110170919  sodium/potassium-transporting ATPase subunit alpha-1 [KO:K01539] [EC:7.2.2.13]
110172175  sodium/potassium-transporting ATPase subunit alpha-3 [KO:K01539] [EC:7.2.2.13]
110175127  sodium/potassium-transporting ATPase subunit alpha-2-like [KO:K01539] [EC:7.2.2.13]
110174490  sodium/potassium-transporting ATPase subunit alpha-3 [KO:K01539] [EC:7.2.2.13]
110174562  sodium/potassium-transporting ATPase subunit beta-2-like [KO:K01540]
110153390  sodium/potassium-transporting ATPase subunit beta-3-like [KO:K01540]
110175606  sodium/potassium-transporting ATPase subunit beta-233-like [KO:K01540]
110174878  sodium/potassium-transporting ATPase subunit beta-3-like [KO:K01540]
110158606  sodium/potassium-transporting ATPase subunit beta-2-like [KO:K01540]
110154800  sodium/potassium-transporting ATPase subunit beta-1-like [KO:K01540]
110158991  atp1b4; protein ATP1B4 [KO:K01540]
110157000  ankyrin-3-like [KO:K09259]
110154346  LOW QUALITY PROTEIN: ankyrin-3-like [KO:K09259]
110161393  sptan1; spectrin alpha chain, non-erythrocytic 1 [KO:K06114]
110153135  sptbn1; spectrin beta chain, non-erythrocytic 1 isoform X1 [KO:K06115]
110172721  sptbn4; spectrin beta chain, non-erythrocytic 4 [KO:K06115]
110153083  spectrin beta chain, non-erythrocytic 2-like [KO:K06115]
110153084  spectrin beta chain, non-erythrocytic 5-like [KO:K06115]
110158618  spectrin beta chain, non-erythrocytic 1-like [KO:K23932]
110174601  cysteine and glycine-rich protein 1-like [KO:K09377]
110164895  cysteine and glycine-rich protein 1-like [KO:K09377]
110173662  cysteine and glycine-rich protein 3-like [KO:K09377]
110172541  cysteine and glycine-rich protein 2 [KO:K09377]
110170165  myosin-7-like [KO:K24220]
110168580  myosin heavy chain, fast skeletal muscle-like [KO:K24220]
110168659  myosin heavy chain, fast skeletal muscle-like [KO:K24220]
110168677  myosin heavy chain, fast skeletal muscle-like [KO:K24220]
110169134  myosin heavy chain, fast skeletal muscle-like [KO:K24220]
110169712  myosin heavy chain, fast skeletal muscle-like isoform X1 [KO:K24220]
110169715  myosin heavy chain, fast skeletal muscle-like [KO:K24220]
110169799  LOW QUALITY PROTEIN: myosin heavy chain, fast skeletal muscle-like [KO:K24220]
110158044  myosin-7B-like [KO:K24220]
110170424  myosin-7-like [KO:K17751]
110170425  myosin-7 [KO:K17751]
110160808  myosin-6-like [KO:K17751]
110166083  myosin-9-like [KO:K10352]
110166163  LOW QUALITY PROTEIN: myosin-10-like [KO:K10352]
110171460  myh9; myosin-9 [KO:K10352]
110175667  myh11; myosin-11 [KO:K10352]
110156215  myosin light chain 1, skeletal muscle isoform [KO:K05738]
110158347  myosin light chain 4-like [KO:K12749]
110160456  myosin light chain 4-like [KO:K12750]
110153909  myosin regulatory light chain 2, ventricular/cardiac muscle isoform [KO:K10351]
110161518  myosin light chain 5-like [KO:K12753]
110157044  myl7; myosin regulatory light chain 2, atrial isoform [KO:K12754]
110165714  myosin regulatory light polypeptide 9 [KO:K12755]
110170973  myosin regulatory light chain 2, skeletal muscle isoform-like [KO:K12758]
110159982  myosin regulatory light chain 2, skeletal muscle isoform-like [KO:K12758]
110161375  mybpc1; myosin-binding protein C, slow-type [KO:K12557]
110167778  mybpc2; myosin-binding protein C, fast-type [KO:K12558]
110159566  LOW QUALITY PROTEIN: myosin-binding protein C, fast-type-like [KO:K12558]
110173105  mybpc3; myosin-binding protein C, cardiac-type [KO:K12568]
110174675  myosin-binding protein H-like [KO:K24494]
110164945  myosin-binding protein H-like [KO:K24494]
110172824  actin, alpha skeletal muscle A [KO:K12314]
110156395  actin, alpha cardiac muscle 1 [KO:K12314]
110155223  actin, alpha cardiac-like [KO:K12314]
110164676  tnnc1; troponin C, slow skeletal and cardiac muscles [KO:K05865]
110166471  troponin C, slow skeletal and cardiac muscles-like [KO:K05865]
110174794  troponin I, slow skeletal muscle-like [KO:K10371]
110169284  troponin I, cardiac muscle-like [KO:K10371]
110169285  troponin I, slow skeletal muscle-like [KO:K10371]
110164897  troponin I, slow skeletal muscle-like [KO:K10371]
110170322  troponin I, slow skeletal muscle-like [KO:K10371]
110159540  troponin T, slow skeletal muscle-like [KO:K10372]
110171395  troponin T, slow skeletal muscle-like isoform X1 [KO:K10372]
110175091  troponin C, skeletal muscle-like [KO:K12042]
110175093  troponin C, skeletal muscle [KO:K12042]
110166759  troponin I, fast skeletal muscle-like [KO:K12043]
110166760  troponin I, fast skeletal muscle-like [KO:K12043]
110166761  troponin I, fast skeletal muscle-like [KO:K12043]
110166882  troponin I, fast skeletal muscle-like [KO:K12043]
110166883  troponin I, fast skeletal muscle-like [KO:K12043]
110164019  troponin I, fast skeletal muscle-like [KO:K12043]
110166758  troponin I, fast skeletal muscle-like [KO:K12043]
110166762  tnnt3; troponin T, fast skeletal muscle isoform X1 [KO:K12046]
110170845  troponin T, fast skeletal muscle isoforms-like isoform X1 [KO:K12046]
110164889  tnnt2; troponin T, cardiac muscle [KO:K12045]
110169617  troponin T, cardiac muscle isoforms-like [KO:K12045]
110174773  troponin T, cardiac muscle isoforms-like isoform X1 [KO:K12045]
110161716  troponin T, cardiac muscle isoforms-like isoform X1 [KO:K12045]
110175326  tropomyosin alpha-1 chain-like isoform X1 [KO:K10373]
110156534  tropomyosin alpha-1 chain isoform X1 [KO:K10373]
110161774  tropomyosin beta chain isoform X1 [KO:K10374]
110167917  tropomyosin alpha-3 chain [KO:K09290]
110164086  tropomyosin alpha-3 chain-like isoform X1 [KO:K10375]
110160108  tpm4; tropomyosin alpha-4 chain isoform X1 [KO:K10375]
110158775  LOW QUALITY PROTEIN: titin-like [KO:K12567] [EC:2.7.11.1]
110171449  tcap; telethonin [KO:K19879]
110159351  synaptopodin-2-like [KO:K24066]
110156640  neb; nebulin [KO:K18267]
110157242  myozenin-1-like [KO:K26050]
110159353  myozenin-2-like [KO:K26050]
110157660  myozenin-2-like [KO:K26050]
110165412  myozenin-2-like [KO:K26050]
110159520  myozenin-1-like [KO:K26050]
110153975  pdlim4; PDZ and LIM domain protein 4 [KO:K23353]
110162109  pdlim1; PDZ and LIM domain protein 1 [KO:K23353]
110166203  pdlim3; PDZ and LIM domain protein 3 [KO:K23353]
110169853  pdlim2; PDZ and LIM domain protein 2 [KO:K23353]
110155110  capza2; F-actin-capping protein subunit alpha-2 [KO:K10364]
110168719  capzb; F-actin-capping protein subunit beta [KO:K10365]
110163935  xirp2; xin actin-binding repeat-containing protein 2 [KO:K27381]
110170381  xin actin-binding repeat-containing protein 1-like [KO:K27381]
110153204  xin actin-binding repeat-containing protein 2-like [KO:K27381]
110154268  nrap; LOW QUALITY PROTEIN: nebulin-related-anchoring protein [KO:K24421]
110162306  mypn; myopalladin [KO:K22028]
110153495  PDZ and LIM domain protein 5-like [KO:K19867]
110160573  PDZ and LIM domain protein 5-like isoform X1 [KO:K19867]
110164045  pdlim7; PDZ and LIM domain protein 7 isoform X1 [KO:K19867]
110153157  LIM domain-binding protein 3-like [KO:K19867]
110163801  LIM domain-binding protein 3-like [KO:K19867]
110172864  tmod3; tropomodulin-3 [KO:K10370]
110162672  tmod4; tropomodulin-4 [KO:K10370]
110166164  tmod1; tropomodulin-1 isoform X1 [KO:K10370]
110162979  zyxin-like [KO:K06273]
110158844  fhl1; four and a half LIM domains protein 1 isoform X1 [KO:K14365]
110162194  four and a half LIM domains protein 1-like [KO:K14365]
110173150  fhl2; four and a half LIM domains protein 2 [KO:K14380]
110174243  fhl3; four and a half LIM domains protein 3 [KO:K24414]
110164810  lmod3; leiomodin-3 [KO:K22030]
110166768  leiomodin-2-like [KO:K22030]
110170234  lmod1; leiomodin-1 [KO:K22030]
110161874  leiomodin-2-like [KO:K22030]
110154516  ankrd1; ankyrin repeat domain-containing protein 1 [KO:K21433]
110156903  ankyrin repeat domain-containing protein 2-like [KO:K21434]
110154361  fmnl1; formin-like protein 1 [KO:K23957]
110164948  fmnl3; formin-like protein 3 isoform X1 [KO:K23957]
110166571  fmnl2; formin-like protein 2 isoform X1 [KO:K23957]
110168935  formin-like protein 1 [KO:K23957]
110172071  formin-like protein 2 [KO:K23957]
110155446  inf2; inverted formin-2 isoform X1 [KO:K23958]
110155483  daam2; disheveled-associated activator of morphogenesis 2 [KO:K04512]
110154989  disheveled-associated activator of morphogenesis 1-like [KO:K04512]
110175805  daam1; LOW QUALITY PROTEIN: disheveled-associated activator of morphogenesis 1 [KO:K04512]
110162382  diaph1; protein diaphanous homolog 1 isoform X1 [KO:K05740]
110158866  diaph2; protein diaphanous homolog 2 [KO:K05741]
110173036  diaph3; protein diaphanous homolog 3 [KO:K05745]
110154374  formin-2-like [KO:K02184]
110164154  myomesin-1-like [KO:K24495]
110170009  myom1; myomesin-1 [KO:K24495]
110175305  M-protein, striated muscle-like [KO:K24495]
110174412  myomesin-3-like [KO:K24495]
110174877  beta-enolase [KO:K01689] [EC:4.2.1.11]
110162624  gamma-enolase [KO:K01689] [EC:4.2.1.11]
110168625  enolase-like [KO:K01689] [EC:4.2.1.11]
110164992  eno1; enolase [KO:K01689] [EC:4.2.1.11]
110163019  eno2; gamma-enolase [KO:K01689] [EC:4.2.1.11]
110170719  ankyrin-2-like [KO:K09255]
110165301  ankyrin-2-like [KO:K09255]
110169091  creatine kinase M-type [KO:K27382] [EC:2.7.3.2]
110160881  trim55; tripartite motif-containing protein 55 [KO:K10654]
110174722  LOW QUALITY PROTEIN: tripartite motif-containing protein 54-like [KO:K10654]
110166998  trim54; tripartite motif-containing protein 54 [KO:K10654]
110158190  E3 ubiquitin-protein ligase TRIM63-like [KO:K10655] [EC:2.3.2.27]
110160340  AMP deaminase 3-like [KO:K01490] [EC:3.5.4.6]
110164109  AMP deaminase 3-like [KO:K01490] [EC:3.5.4.6]
110164687  AMP deaminase 2-like [KO:K01490] [EC:3.5.4.6]
110157990  ampd1; AMP deaminase 1 [KO:K01490] [EC:3.5.4.6]
110168697  AMP deaminase 2-like isoform X1 [KO:K01490] [EC:3.5.4.6]
110159645  obscn; obscurin [KO:K17531] [EC:2.7.11.1]
110157545  capn3; calpain-3 [KO:K08573] [EC:3.4.22.54]
110173943  calpain-3-like [KO:K08573] [EC:3.4.22.54]
110171780  plectin-like [KO:K10388]
110167177  plectin-like [KO:K10388]
110165494  syne3; nesprin-3 [KO:K21761]
110156042  LOW QUALITY PROTEIN: nesprin-1-like [KO:K19326]
110153425  nesprin-2-like [KO:K19326]
110155341  nesprin-1-like [KO:K19326]
110157760  SUN domain-containing protein 2-like [KO:K19347]
110167330  sun1; SUN domain-containing protein 1 [KO:K19347]
110168708  tmem43; transmembrane protein 43 [KO:K27488]
110164781  uncharacterized protein LOC110164781 isoform X1 [KO:K12569]
110175403  lbr; lamin-B receptor [KO:K19532] [EC:1.3.1.70]
110153900  lamin-A-like [KO:K12641]
110168861  lamin-A-like [KO:K12641]
110161565  lmnb1; lamin-B1 [KO:K07611]
110156648  lamin-L(III)-like [KO:K07611]
110162764  lmnb2; lamin-B2 [KO:K07611]
Reference
PMID:12142273
  Authors
Clark KA, McElhinny AS, Beckerle MC, Gregorio CC
  Title
Striated muscle cytoarchitecture: an intricate web of form and function.
  Journal
Annu Rev Cell Dev Biol 18:637-706 (2002)
DOI:10.1146/annurev.cellbio.18.012502.105840
Reference
PMID:31407867
  Authors
Mukund K, Subramaniam S
  Title
Skeletal muscle: A review of molecular structure and function, in health and disease.
  Journal
Wiley Interdiscip Rev Syst Biol Med 12:e1462 (2020)
DOI:10.1002/wsbm.1462
Reference
PMID:24481844
  Authors
Stroud MJ, Banerjee I, Veevers J, Chen J
  Title
Linker of nucleoskeleton and cytoskeleton complex proteins in cardiac structure, function, and disease.
  Journal
Circ Res 114:538-48 (2014)
DOI:10.1161/CIRCRESAHA.114.301236
Reference
PMID:28640448
  Authors
Henderson CA, Gomez CG, Novak SM, Mi-Mi L, Gregorio CC
  Title
Overview of the Muscle Cytoskeleton.
  Journal
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Front Physiol 11:253 (2020)
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The myogenic electric organ of Sternopygus macrurus: a non-contractile tissue with a skeletal muscle transcriptome.
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The physiological role of cardiac cytoskeleton and its alterations in heart failure.
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Biochim Biophys Acta 1838:700-22 (2014)
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Proc Natl Acad Sci U S A 108:6480-5 (2011)
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Proc Natl Acad Sci U S A 117:27132-27140 (2020)
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Biophys J 110:798-809 (2016)
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Cell Res 22:1440-52 (2012)
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Structural insights into LINC complexes.
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Curr Opin Struct Biol 23:285-91 (2013)
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J Mol Biol 432:6028-6041 (2020)
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Extracellular matrix: Brick and mortar in the skeletal muscle stem cell niche.
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Front Cell Dev Biol 10:1056523 (2022)
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The Pathogenesis and Therapies of Striated Muscle Laminopathies.
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Front Physiol 9:1533 (2018)
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Storey EC, Fuller HR
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Genotype-Phenotype Correlations in Human Diseases Caused by Mutations of LINC Complex-Associated Genes: A Systematic Review and Meta-Summary.
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Cells 11:cells11244065 (2022)
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pathway
bpec04512  ECM-receptor interaction
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KO pathway
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