KEGG   PATHWAY: ocu05340
Entry
ocu05340                    Pathway                                
Name
Primary immunodeficiency - Oryctolagus cuniculus (rabbit)
Description
Primary immunodeficiencies (PIs) are a heterogeneous group of disorders, which affect cellular and humoral immunity or non-specific host defense mechanisms mediated by complement proteins, and cells such as phagocytes and natural killer (NK) cells. These disorders of the immune system cause increased susceptibility to infection, autoimmune disease, and malignancy. Most of PIs are due to genetic defects that affect cell maturation or function at different levels during hematopoiesis. Disruption of the cellular immunity is observed in patients with defects in T cells or both T and B cells. These cellular immunodeficiencies comprise 20% of all PIs. Disorders of humoral immunity affect B-cell differentiation and antibody production. They account for 70% of all PIs.
Class
Human Diseases; Immune disease
Pathway map
ocu05340  Primary immunodeficiency
ocu05340

Organism
Oryctolagus cuniculus (rabbit) [GN:ocu]
Gene
100346236  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
100343726  interleukin-7 receptor subunit alpha [KO:K05072]
103351862  cytokine receptor common subunit gamma [KO:K05070]
127486194  tyrosine-protein kinase JAK3 [KO:K11218] [EC:2.7.10.2]
100349686  protein artemis isoform X1 [KO:K10887] [EC:3.1.-.-]
100328950  RAG1; V(D)J recombination-activating protein 1 [KO:K10628] [EC:2.3.2.27]
100328951  RAG2; V(D)J recombination-activating protein 2 [KO:K10988]
100356153  T-cell surface glycoprotein CD3 delta chain isoform X1 [KO:K06450]
100339529  T-cell surface glycoprotein CD3 epsilon chain [KO:K06451]
100008616  CD3E; T-cell surface glycoprotein CD3 epsilon chain precursor [KO:K06451]
100358807  receptor-type tyrosine-protein phosphatase C isoform X1 [KO:K06478] [EC:3.1.3.48]
100009152  CD4; T-cell surface glycoprotein CD4 precursor [KO:K06454]
100356269  T-cell surface glycoprotein CD8 alpha chain [KO:K06458]
100355767  T-cell surface glycoprotein CD8 beta chain [KO:K06459]
100349155  antigen peptide transporter 1 [KO:K05653] [EC:7.4.2.14]
100351666  antigen peptide transporter 2 isoform X1 [KO:K05654] [EC:7.4.2.14]
100349102  tyrosine-protein kinase Lck [KO:K05856] [EC:2.7.10.2]
100342021  tyrosine-protein kinase ZAP-70 [KO:K07360] [EC:2.7.10.2]
100328902  RFX5; DNA-binding protein RFX5 [KO:K08061]
100338019  regulatory factor X-associated protein [KO:K08063]
103346995  DNA-binding protein RFXANK isoform X1 [KO:K08062]
100338894  MHC class II transactivator isoform X1 [KO:K08060] [EC:2.7.11.1]
100349347  calcium release-activated calcium channel protein 1 isoform X1 [KO:K16056]
127484746  calcium release-activated calcium channel protein 1 [KO:K16056]
100009097  Ig gamma chain C region [KO:K06856]
103347220  immunoglobulin heavy variable 3-66 [KO:K06856]
100353328  immunoglobulin heavy variable 3-11 [KO:K06856]
100352996  immunoglobulin heavy variable 3-66 [KO:K06856]
100008913  IGLL1; immunoglobulin lambda-like polypeptide 1 precursor [KO:K06554]
100354716  B-cell linker protein isoform X1 [KO:K07371]
100354225  tyrosine-protein kinase BTK [KO:K07370] [EC:2.7.10.2]
100328905  IKBKG; NF-kappa-B essential modulator [KO:K07210]
100349106  tumor necrosis factor receptor superfamily member 5 [KO:K03160]
100358388  CD40LG; CD40 ligand [KO:K03161]
100338366  uracil-DNA glycosylase [KO:K03648] [EC:3.2.2.27]
100008969  single-stranded DNA cytosine deaminase [KO:K10989] [EC:3.5.4.38]
100352250  inducible T-cell costimulator [KO:K06713]
100350951  tumor necrosis factor receptor superfamily member 13C [KO:K05151]
100345233  B-lymphocyte antigen CD19 [KO:K06465]
100341235  tumor necrosis factor receptor superfamily member 13B [KO:K05150]
Reference
  Authors
Cunningham-Rundles C, Ponda PP.
  Title
Molecular defects in T- and B-cell primary immunodeficiency diseases.
  Journal
Nat Rev Immunol 5:880-92 (2005)
DOI:10.1038/nri1713
Reference
  Authors
Ballow M.
  Title
Primary immunodeficiency disorders: antibody deficiency.
  Journal
J Allergy Clin Immunol 109:581-91 (2002)
DOI:10.1067/mai.2002.122466
Reference
  Authors
Marodi L, Notarangelo LD.
  Title
Immunological and genetic bases of new primary immunodeficiencies.
  Journal
Nat Rev Immunol 7:851-61 (2007)
DOI:10.1038/nri2195
Reference
  Authors
Geha RS, Notarangelo LD, Casanova JL, Chapel H, Conley ME, Fischer A, Hammarstrom L, Nonoyama S, Ochs HD, Puck JM, Roifman C, Seger R, Wedgwood J.
  Title
Primary immunodeficiency diseases: an update from the International Union of Immunological Societies Primary Immunodeficiency Diseases Classification Committee.
  Journal
J Allergy Clin Immunol 120:776-94 (2007)
DOI:10.1016/j.jaci.2007.08.053
Reference
  Authors
Fischer A.
  Title
Human primary immunodeficiency diseases.
  Journal
Immunity 27:835-45 (2007)
DOI:10.1016/j.immuni.2007.11.012
Reference
  Authors
Fischer A.
  Title
Human primary immunodeficiency diseases: a perspective.
  Journal
Nat Immunol 5:23-30 (2004)
DOI:10.1038/ni1023
Reference
  Authors
Buckley RH.
  Title
Primary immunodeficiency diseases due to defects in lymphocytes.
  Journal
N Engl J Med 343:1313-24 (2000)
DOI:10.1056/NEJM200011023431806
Reference
  Authors
Fischer A, Le Deist F, Hacein-Bey-Abina S, Andre-Schmutz I, Basile Gde S, de Villartay JP, Cavazzana-Calvo M.
  Title
Severe combined immunodeficiency. A model disease for molecular immunology and therapy.
  Journal
Immunol Rev 203:98-109 (2005)
DOI:10.1111/j.0105-2896.2005.00223.x
Reference
  Authors
de Villartay JP, Fischer A, Durandy A.
  Title
The mechanisms of immune diversification and their disorders.
  Journal
Nat Rev Immunol 3:962-72 (2003)
DOI:10.1038/nri1247
Related
pathway
ocu04640  Hematopoietic cell lineage
ocu04660  T cell receptor signaling pathway
ocu04662  B cell receptor signaling pathway
KO pathway
ko05340   
LinkDB

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