KEGG   PATHWAY: ogo04622
Entry
ogo04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Oncorhynchus gorbuscha (pink salmon)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
ogo04622  RIG-I-like receptor signaling pathway
ogo04622

Organism
Oncorhynchus gorbuscha (pink salmon) [GN:ogo]
Gene
124007771  ddx58; probable ATP-dependent RNA helicase DDX58 isoform X1 [KO:K12646] [EC:5.6.2.6]
124042636  interferon-induced helicase C domain-containing protein 1-like [KO:K12647] [EC:5.6.2.6]
124003310  NFX1-type zinc finger-containing protein 1-like [KO:K27391]
124016384  znfx1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
124047010  mitochondrial antiviral-signaling protein-like [KO:K12648]
124001999  fibrous sheath CABYR-binding protein-like isoform X1 [KO:K12648]
123999305  probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
124016347  probable ATP-dependent RNA helicase DHX58 isoform X1 [KO:K12649] [EC:5.6.2.6]
124001950  traf3; TNF receptor-associated factor 3 [KO:K03174]
124046622  TNF receptor-associated factor 3-like [KO:K03174]
124042557  LOW QUALITY PROTEIN: TRAF family member-associated NF-kappa-B activator-like [KO:K12650]
124043831  TRAF family member-associated NF-kappa-B activator-like [KO:K12650]
124028122  5-azacytidine-induced protein 2-like [KO:K12651]
124028449  5-azacytidine-induced protein 2-like [KO:K12651]
124029321  5-azacytidine-induced protein 2-like [KO:K12651]
124039878  TANK-binding kinase 1-binding protein 1-like [KO:K12652]
124048258  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
124000256  TANK-binding kinase 1-binding protein 1-like isoform X1 [KO:K12652]
124016197  TANK-binding kinase 1-binding protein 1-like [KO:K12652]
124045443  NF-kappa-B essential modulator-like [KO:K07210]
124032432  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
124026129  tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
124003990  inhibitor of nuclear factor kappa-B kinase subunit epsilon-like isoform X1 [KO:K07211] [EC:2.7.11.10]
124048534  irf3; interferon regulatory factor 3 isoform X1 [KO:K05411]
124003375  irf7; interferon regulatory factor 7 [KO:K09447]
124002100  interferon regulatory factor 3-like [KO:K09447]
124048445  interferon a3-like isoform X1 [KO:K05414]
123998589  interferon a3-like [KO:K05414]
123998697  interferon a3-like [KO:K05414]
123998731  interferon a3-like [KO:K05414]
123998798  interferon a3-like [KO:K05414]
123998892  interferon epsilon-like [KO:K05414]
123999658  interferon beta-like [KO:K05414]
123999659  interferon a3-like [KO:K05414]
123999660  interferon a3-like [KO:K05414]
124000026  interferon beta-like [KO:K05414]
124000027  interferon a3 isoform X1 [KO:K05414]
124000030  interferon a3-like [KO:K05414]
124000032  interferon a3-like [KO:K05414]
124015030  interferon alpha-H-like [KO:K05414]
124015338  interferon a3-like [KO:K05414]
124016231  interferon beta-like [KO:K05414]
124016232  interferon beta-like [KO:K05414]
124016233  interferon beta-like [KO:K05414]
124016235  interferon beta-like [KO:K05414]
124016236  interferon beta-like [KO:K05414]
124016237  interferon alpha-1-like [KO:K05414]
124016359  interferon a3-like isoform X1 [KO:K05414]
124015414  interferon kappa-like [KO:K05414]
124033724  tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
124035707  tumor necrosis factor receptor type 1-associated DEATH domain protein-like [KO:K03171]
124033904  fadd; protein FADD [KO:K02373]
124034867  FAS-associated death domain protein-like [KO:K02373]
124010072  receptor-interacting serine/threonine-protein kinase 1-like [KO:K02861] [EC:2.7.11.1]
124041770  receptor-interacting serine/threonine-protein kinase 1-like isoform X1 [KO:K02861] [EC:2.7.11.1]
124041578  casp8; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
124043892  caspase-8-like [KO:K04398] [EC:3.4.22.61]
124009734  caspase-8-like [KO:K04398] [EC:3.4.22.61]
124048289  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
124048544  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
124039858  inhibitor of nuclear factor kappa-B kinase subunit alpha-like isoform X1 [KO:K04467] [EC:2.7.11.10]
124036437  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
123991576  NF-kappa-B inhibitor alpha-like [KO:K04734]
124019341  NF-kappa-B inhibitor alpha-like [KO:K04734]
124045314  nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734]
124001492  NF-kappa-B inhibitor alpha-like [KO:K04734]
123993319  nuclear factor NF-kappa-B p105 subunit-like [KO:K02580]
124011515  nuclear factor NF-kappa-B p105 subunit-like [KO:K02580]
124014577  LOW QUALITY PROTEIN: putative transcription factor p65 homolog [KO:K04735]
124008159  transcription factor p65-like [KO:K04735]
124034131  TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]
124048979  traf2b; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
124049064  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
124006998  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
124007347  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
123990663  mitogen-activated protein kinase kinase kinase 7-like isoform X1 [KO:K04427] [EC:2.7.11.25]
123994996  mitogen-activated protein kinase kinase kinase 7-like isoform X1 [KO:K04427] [EC:2.7.11.25]
124001457  mitogen-activated protein kinase kinase kinase 7-like isoform X1 [KO:K04427] [EC:2.7.11.25]
124017527  mitogen-activated protein kinase kinase kinase 7-like [KO:K04427] [EC:2.7.11.25]
124026357  LOW QUALITY PROTEIN: TNF receptor-associated factor 6-like [KO:K03175] [EC:2.3.2.27]
124027860  TNF receptor-associated factor 6-like [KO:K03175] [EC:2.3.2.27]
124033071  TNF receptor-associated factor 6-like [KO:K03175] [EC:2.3.2.27]
123989496  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
123993247  mitogen-activated protein kinase 9-like isoform X1 [KO:K04440] [EC:2.7.11.24]
124039986  mitogen-activated protein kinase 8-like isoform X1 [KO:K04440] [EC:2.7.11.24]
124048207  mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
124048657  mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
124041473  mitogen-activated protein kinase 8-like isoform X1 [KO:K04440] [EC:2.7.11.24]
123999662  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
124006790  mitogen-activated protein kinase 9-like [KO:K04440] [EC:2.7.11.24]
124038076  mitogen-activated protein kinase 8-like isoform X1 [KO:K04440] [EC:2.7.11.24]
123994513  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
123994514  mitogen-activated protein kinase 11-like [KO:K04441] [EC:2.7.11.24]
124002691  mapk12a; mitogen-activated protein kinase 12 isoform X1 [KO:K04441] [EC:2.7.11.24]
124002932  mitogen-activated protein kinase 14A-like isoform X1 [KO:K04441] [EC:2.7.11.24]
124034927  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
124013918  mitogen-activated protein kinase 11-like [KO:K04441] [EC:2.7.11.24]
124013993  mitogen-activated protein kinase 12-like isoform X1 [KO:K04441] [EC:2.7.11.24]
124031636  mitogen-activated protein kinase 14A-like [KO:K04441] [EC:2.7.11.24]
124031849  mapk13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
124046141  mapk14a; mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
124046145  mitogen-activated protein kinase 12-like isoform X1 [KO:K04441] [EC:2.7.11.24]
124032327  mitogen-activated protein kinase 14A-like isoform X1 [KO:K04441] [EC:2.7.11.24]
124032336  zgc:171775; STKc_p38 domain-containing protein [KO:K04441] [EC:2.7.11.24]
124000225  permeability factor 2-like [KO:K10030]
124000232  permeability factor 2-like [KO:K10030]
124014419  permeability factor 2-like [KO:K10030]
124008528  interleukin-8-like [KO:K10030]
124016016  platelet basic protein-like [KO:K10030]
124042669  tumor necrosis factor-like [KO:K03156]
124013080  tnfa; tumor necrosis factor a (TNF superfamily, member 2) [KO:K03156]
124006115  tumor necrosis factor-like [KO:K03156]
123992739  uncharacterized protein LOC123992739 [KO:K05406]
124040981  interleukin-12 subunit alpha-like [KO:K05406]
124004815  uncharacterized protein LOC124004815 [KO:K05406]
123992386  interleukin-12 subunit beta-like [KO:K05425]
123995050  interleukin-12 subunit beta-like [KO:K05425]
124033204  si:dkey-88e18.2; interleukin-12 subunit beta [KO:K05425]
124011619  interleukin-12 subunit beta-like [KO:K05425]
124000567  interleukin-12 subunit beta-like isoform X1 [KO:K05425]
124007364  permeability factor 2-like [KO:K12671]
124005167  LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase-like [KO:K12968] [EC:3.5.4.37]
123998210  LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase-like [KO:K12968] [EC:3.5.4.37]
124004232  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
124039601  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
124015766  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
124045086  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
123996473  cyldl; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
124003038  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
124033583  LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
124035564  ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]
124007782  si:cabz01101003.1; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
124031470  ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]
123997777  autophagy protein 5-like [KO:K08339]
124005361  autophagy protein 5-like [KO:K08339]
123996913  ubiquitin-like protein ATG12 [KO:K08336]
124005381  ubiquitin-like protein ATG12 [KO:K08336]
124005054  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
124011318  stimulator of interferon genes protein-like [KO:K12654]
124045553  otud5a; OTU domain-containing protein 5-A isoform X1 [KO:K12655] [EC:3.4.19.12]
124022170  sike1; suppressor of IKBKE 1 [KO:K12656]
124010914  putative ATP-dependent RNA helicase Pl10 isoform X1 [KO:K11594] [EC:5.6.2.7]
124044022  putative ATP-dependent RNA helicase an3 isoform X1 [KO:K11594] [EC:5.6.2.7]
124044225  ATP-dependent RNA helicase DDX3Y-like isoform X1 [KO:K11594] [EC:5.6.2.7]
124008137  LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX3X-like [KO:K11594] [EC:5.6.2.7]
124018432  peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like [KO:K09578] [EC:5.2.1.8]
124018436  peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like [KO:K09578] [EC:5.2.1.8]
124025734  LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like [KO:K09578] [EC:5.2.1.8]
124022895  tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
ogo04010  MAPK signaling pathway
ogo04120  Ubiquitin mediated proteolysis
ogo04210  Apoptosis
KO pathway
ko04622   
LinkDB

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