KEGG   PATHWAY: olu03040
Entry
olu03040                    Pathway                                
Name
Spliceosome - Ostreococcus lucimarinus
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
olu03040  Spliceosome
olu03040

Other DBs
GO: 0005681
Organism
Ostreococcus lucimarinus [GN:olu]
Gene
OSTLU_34710  predicted protein [KO:K12811] [EC:5.6.2.7]
OSTLU_89708  predicted protein [KO:K12812] [EC:5.6.2.7]
OSTLU_18937  predicted protein [KO:K12813] [EC:5.6.2.6]
OSTLU_42421  predicted protein [KO:K12815] [EC:5.6.2.6]
OSTLU_17027  predicted protein [KO:K12816]
OSTLU_4052  predicted protein [KO:K12817]
OSTLU_31151  predicted protein [KO:K12818] [EC:5.6.2.6]
OSTLU_28903  predicted protein [KO:K12818] [EC:5.6.2.6]
OSTLU_43956  predicted protein [KO:K12818] [EC:5.6.2.6]
OSTLU_19906  predicted protein [KO:K12819]
OSTLU_12120  predicted protein [KO:K12820] [EC:5.6.2.6]
OSTLU_14893  predicted protein [KO:K11086]
OSTLU_12445  predicted protein [KO:K11087]
OSTLU_35794  predicted protein [KO:K11096]
OSTLU_9203  predicted protein [KO:K11088]
OSTLU_29422  predicted protein [KO:K11097]
OSTLU_34727  predicted protein [KO:K11098]
OSTLU_27053  predicted protein [KO:K11099]
OSTLU_7191  predicted protein [KO:K11093]
OSTLU_27364  predicted protein [KO:K12821]
OSTLU_27227  predicted protein [KO:K12823] [EC:5.6.2.7]
OSTLU_36611  predicted protein [KO:K12823] [EC:5.6.2.7]
OSTLU_47095  predicted protein [KO:K12823] [EC:5.6.2.7]
OSTLU_1537  predicted protein [KO:K12823] [EC:5.6.2.7]
OSTLU_2814  predicted protein [KO:K12823] [EC:5.6.2.7]
OSTLU_1794  predicted protein [KO:K12823] [EC:5.6.2.7]
OSTLU_35071  predicted protein [KO:K11092]
OSTLU_48819  predicted protein [KO:K11094]
OSTLU_86131  predicted protein [KO:K12825]
OSTLU_13495  predicted protein [KO:K12826]
OSTLU_40716  predicted protein [KO:K12827]
OSTLU_14418  predicted protein [KO:K12828]
OSTLU_119367  Sf3b2; splicing factor 3B subunit2, probable [KO:K12829]
OSTLU_24669  predicted protein [KO:K12830]
OSTLU_38809  predicted protein [KO:K12831]
OSTLU_12621  predicted protein [KO:K12832]
OSTLU_27744  predicted protein [KO:K12833]
OSTLU_39608  predicted protein [KO:K12834]
OSTLU_1114  predicted protein [KO:K12835] [EC:5.6.2.7]
OSTLU_13306  predicted protein [KO:K12836]
OSTLU_5724  predicted protein [KO:K12837]
OSTLU_25246  predicted protein [KO:K12837]
OSTLU_29366  predicted protein [KO:K12839]
OSTLU_29530  predicted protein [KO:K12840]
OSTLU_26450  predicted protein [KO:K12842]
OSTLU_28777  predicted protein [KO:K12621]
OSTLU_43771  predicted protein [KO:K12622]
OSTLU_12601  predicted protein [KO:K12623]
OSTLU_32713  predicted protein [KO:K12624]
OSTLU_42488  predicted protein [KO:K12626]
OSTLU_32889  predicted protein [KO:K12627]
OSTLU_2670  predicted protein [KO:K12843]
OSTLU_43856  predicted protein [KO:K12662]
OSTLU_28138  CYN22; Peptidyl-prolyl cis-trans isomerase, cyclophilin-type [KO:K09567] [EC:5.2.1.8]
OSTLU_94220  predicted protein [KO:K12844]
OSTLU_41236  predicted protein [KO:K12845]
OSTLU_2491  predicted protein [KO:K12847]
OSTLU_18354  predicted protein [KO:K11984]
OSTLU_15042  predicted protein [KO:K12848]
OSTLU_39976  predicted protein [KO:K12849]
OSTLU_31094  predicted protein [KO:K12850]
OSTLU_35547  predicted protein [KO:K12852]
OSTLU_44002  predicted protein [KO:K12854] [EC:5.6.2.6]
OSTLU_43635  predicted protein [KO:K12855]
OSTLU_50795  predicted protein [KO:K12856]
OSTLU_12918  predicted protein [KO:K12857]
OSTLU_94867  predicted protein [KO:K12858] [EC:5.6.2.7]
OSTLU_26866  predicted protein [KO:K12859]
OSTLU_30495  predicted protein [KO:K10599] [EC:2.3.2.27]
OSTLU_31513  predicted protein [KO:K12860]
OSTLU_16047  predicted protein [KO:K12861]
OSTLU_50173  predicted protein [KO:K12862]
OSTLU_33271  predicted protein [KO:K12863]
OSTLU_37801  predicted protein [KO:K12864]
OSTLU_48839  HSP70B; Heat Shock Protein 70, chloroplast [KO:K03283]
OSTLU_28169  HSP70A; Heat Shock Protein 70, cytosolic [KO:K03283]
OSTLU_32019  HSP70G; Heat Shock Protein 70, cytosolic [KO:K03283]
OSTLU_33395  predicted protein [KO:K12865]
OSTLU_119541  prp45; Pre-mRNA splicing factor prp45 [KO:K06063]
OSTLU_42299  predicted protein [KO:K12867]
OSTLU_41360  predicted protein [KO:K12868]
OSTLU_36244  predicted protein [KO:K12869]
OSTLU_12466  predicted protein [KO:K12870]
OSTLU_14660  predicted protein [KO:K12733] [EC:5.2.1.8]
OSTLU_29456  predicted protein [KO:K12871]
OSTLU_41266  predicted protein [KO:K12872]
OSTLU_10590  predicted protein [KO:K12873]
OSTLU_38450  predicted protein [KO:K12874]
OSTLU_26958  predicted protein [KO:K13025] [EC:5.6.2.7]
OSTLU_9485  predicted protein [KO:K12876]
OSTLU_13748  predicted protein [KO:K12877]
OSTLU_14373  predicted protein [KO:K12878]
OSTLU_119527  tho2; transcription & nuclear export THO-TREX component protein Tho2-like protein [KO:K12879]
OSTLU_30768  predicted protein [KO:K12880]
OSTLU_29370  predicted protein [KO:K12881]
OSTLU_87731  predicted protein [KO:K12882]
OSTLU_43898  predicted protein [KO:K12883]
OSTLU_8794  predicted protein [KO:K12890]
OSTLU_8174  predicted protein [KO:K12891]
OSTLU_9858  predicted protein [KO:K12900]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
KO pathway
ko03040   
LinkDB

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