KEGG   PATHWAY: schu04120
Entry
schu04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Siniperca chuatsi (mandarin fish)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
schu04120  Ubiquitin mediated proteolysis
schu04120

Other DBs
GO: 0016567
Organism
Siniperca chuatsi (mandarin fish) [GN:schu]
Gene
122888113  ubb; polyubiquitin-B isoform X1 [KO:K04551]
122878112  ubiquitin-60S ribosomal protein L40 [KO:K02927]
122887231  ubiquitin-60S ribosomal protein L40-like [KO:K02927]
122884885  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
122882399  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
122882986  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
122879392  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
122874516  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
122883402  NEDD8-activating enzyme E1 catalytic subunit-like isoform X1 [KO:K10686] [EC:6.2.1.64]
122865348  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
122874091  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
122885467  ube2al; ubiquitin conjugating enzyme E2 A, like [KO:K10573] [EC:2.3.2.23]
122880111  ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
122888368  ube2b; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
122865178  ube2c; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
122876039  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
122884247  ubiquitin-conjugating enzyme E2 D4-like [KO:K06689] [EC:2.3.2.23]
122879823  ube2d2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
122867488  ube2d1b; ubiquitin-conjugating enzyme E2 D1b isoform X1 [KO:K06689] [EC:2.3.2.23]
122880711  ubiquitin-conjugating enzyme E2-17 kDa-like isoform X1 [KO:K06689] [EC:2.3.2.23]
122861848  ubiquitin-conjugating enzyme E2 D2-like isoform X1 [KO:K06689] [EC:2.3.2.23]
122882156  ube2e2; ubiquitin-conjugating enzyme E2 E2 isoform X1 [KO:K20217] [EC:2.3.2.23]
122864959  ube2e1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
122864960  ubiquitin-conjugating enzyme E2 E2-like [KO:K20217] [EC:2.3.2.23]
122885255  ube2f; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
122888890  ube2g1a; ubiquitin-conjugating enzyme E2 G1a isoform X1 [KO:K10575] [EC:2.3.2.23]
122877064  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
122866093  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
122885296  ube2g2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
122871022  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
122875130  ubiquitin-conjugating enzyme E2 H-like isoform X1 [KO:K10576] [EC:2.3.2.23]
122868064  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
122863540  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
122868401  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
122873859  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
122880062  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
122876864  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
122865383  ube2l3a; ubiquitin-conjugating enzyme E2 L3a [KO:K04552] [EC:2.3.2.23]
122868845  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
122870989  ube2nb; ubiquitin-conjugating enzyme E2Nb isoform X1 [KO:K10580] [EC:2.3.2.23]
122874233  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
122873578  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
122864271  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
122874733  ubiquitin-conjugating enzyme E2 Q2-like isoform X1 [KO:K10582] [EC:2.3.2.23]
122875002  ubiquitin-conjugating enzyme E2 Q2-like [KO:K10582] [EC:2.3.2.23]
122864105  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
122877832  cdc34a; cell division cycle 34 homolog (S. cerevisiae) a [KO:K02207] [EC:2.3.2.23]
122886302  ubiquitin-conjugating enzyme E2 R1-like [KO:K02207] [EC:2.3.2.23]
122881645  ube2s; ubiquitin-conjugating enzyme E2 S isoform X1 [KO:K10583] [EC:2.3.2.23]
122866775  ube2wb; probable ubiquitin-conjugating enzyme E2 W-B isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
122869309  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
122884905  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
122872128  ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
122877600  ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
122876479  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
122866770  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
122869410  smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
122873896  E3 ubiquitin-protein ligase SMURF2-like isoform X1 [KO:K04678] [EC:2.3.2.26]
122883767  itchb; itchy E3 ubiquitin protein ligase b isoform X1 [KO:K05632] [EC:2.3.2.26]
122887035  itcha; itchy E3 ubiquitin protein ligase a [KO:K05632] [EC:2.3.2.26]
122866800  NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
122874836  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
122879696  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
122873557  nedd4a; E3 ubiquitin-protein ligase NEDD4a isoform X1 [KO:K10591] [EC:2.3.2.26]
122865294  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
122882917  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
122882151  ubr5; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
122875575  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
122865140  probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
122877382  herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
122875059  probable E3 ubiquitin-protein ligase HERC4 [KO:K10614] [EC:2.3.2.26]
122875058  probable E3 ubiquitin-protein ligase HERC4 [KO:K10614] [EC:2.3.2.26]
122873730  herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
122884873  herc4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
122879114  ube4a; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
122883040  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
122869049  E3 ubiquitin-protein ligase CHIP-like isoform X1 [KO:K09561] [EC:2.3.2.27]
122867575  stub1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
122876090  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
122880338  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
122876898  ubox5; RING finger protein 37 isoform X1 [KO:K10600]
122871542  mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
122887977  E3 ubiquitin-protein ligase CBL-like isoform X1 [KO:K04707] [EC:2.3.2.27]
122879350  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
122888420  cblb; E3 ubiquitin-protein ligase CBL-B-B isoform X1 [KO:K22517] [EC:2.3.2.27]
122881959  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
122884124  prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
122874314  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
122870990  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
122887038  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
122877074  rchy1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
122888220  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
122880699  E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
122883305  birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
122875452  pias1b; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
122882059  E3 SUMO-protein ligase PIAS1-like isoform X1 [KO:K04706] [EC:2.3.2.-]
122876862  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
122877475  pias4a; E3 SUMO-protein ligase PIAS4-A isoform X1 [KO:K16065] [EC:2.3.2.27]
122879845  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
122881349  E3 ubiquitin-protein ligase NHLRC1-like [KO:K10602] [EC:2.3.2.27]
122887127  aire; autoimmune regulator [KO:K10603]
122868528  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
122867196  breast cancer type 1 susceptibility protein homolog isoform X1 [KO:K10605] [EC:2.3.2.27]
122884275  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
122872159  E3 ubiquitin-protein ligase Midline-1-like [KO:K08285] [EC:2.3.2.27]
122885697  mid1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
122865415  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
122887958  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
122868958  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
122866431  cullin-1 [KO:K03347]
122888513  skp1; S-phase kinase-associated protein 1 [KO:K03094]
122880046  fbxw11a; F-box and WD repeat domain-containing 11-A isoform X1 [KO:K03362]
122865389  skp2; S-phase kinase-associated protein 2 [KO:K03875]
122870118  LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 7-like [KO:K10260]
122873189  F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
122888560  fbxo2; F-box only protein 2 [KO:K10099]
122876138  fbxo4; F-box only protein 4 isoform X1 [KO:K10291]
122866552  cul2; cullin-2 [KO:K03870]
122866943  eloca; elongin C paralog a [KO:K03872]
122868790  elob; elongin-B [KO:K03873]
122868150  elongin-B-like [KO:K03873]
122866927  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
122878582  cul3b; cullin-3b isoform X1 [KO:K03869]
122886803  cullin-3-like isoform X1 [KO:K03869]
122862081  keap1a; kelch-like ECH-associated protein 1A isoform X1 [KO:K10456]
122873204  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
122888327  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
122885278  si:rp71-68n21.9; kelch-like protein 9 [KO:K10447]
122876398  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
122876960  rho-related BTB domain-containing protein 2-like isoform X1 [KO:K07868]
122873237  cul4a; cullin-4A [KO:K10609]
122880116  cul4b; cullin-4B [KO:K10609]
122876789  ddb1; DNA damage-binding protein 1 [KO:K10610]
122875443  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
122876832  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
122875110  det1; DET1 homolog [KO:K10571]
122879124  rnf7; RING-box protein 2 [KO:K10611]
122887824  cullin-5 isoform X1 [KO:K10612]
122879623  cullin-5-like isoform X1 [KO:K10612]
122874065  socs1b; suppressor of cytokine signaling 1b [KO:K04694]
122868952  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
122867274  socs3b; suppressor of cytokine signaling 3b [KO:K04696]
122875880  fbxw8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
122872827  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
122869060  anapc2; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 2 [KO:K03349]
122875867  cell division cycle protein 20 homolog B-like isoform X1 [KO:K03363]
122886363  cdc20; cell division cycle protein 20 homolog [KO:K03363]
122887558  fzr1b; fizzy-related protein homolog isoform X1 [KO:K03364]
122877968  fizzy-related protein homolog isoform X1 [KO:K03364]
122886279  fizzy-related protein homolog [KO:K03364]
122884977  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
122868960  cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
122877758  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
122876541  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
122885228  cdc16; cell division cycle protein 16 homolog [KO:K03353]
122877049  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
122887906  cdc23; cell division cycle protein 23 homolog [KO:K03355]
122870308  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
122866111  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
122874341  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
122879195  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
122867362  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
schu03050  Proteasome
KO pathway
ko04120   
LinkDB

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