KEGG   PATHWAY: xtr04622
Entry
xtr04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Xenopus tropicalis (tropical clawed frog)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
xtr04622  RIG-I-like receptor signaling pathway
xtr04622

Organism
Xenopus tropicalis (tropical clawed frog) [GN:xtr]
Gene
100495207  ddx58; probable ATP-dependent RNA helicase DDX58 isoform X2 [KO:K12646] [EC:5.6.2.6]
100488298  ifih1; interferon-induced helicase C domain-containing protein 1 isoform X2 [KO:K12647] [EC:5.6.2.6]
100486840  znfx1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
100494665  znfx1.2; NFX1-type zinc finger-containing protein 1 isoform X1 [KO:K27391]
100485829  mavs; mitochondrial antiviral-signaling protein isoform X1 [KO:K12648]
100492559  dhx58; probable ATP-dependent RNA helicase DHX58 isoform X1 [KO:K12649] [EC:5.6.2.6]
100498216  traf3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
100486218  tank; TRAF family member-associated NF-kappa-B activator [KO:K12650]
100487986  azi2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
100496177  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
100145270  ikbkg; NF-kappa-B essential modulator [KO:K07210]
100216212  tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
100487744  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
101734275  irf3; interferon regulatory factor 3 [KO:K05411]
100496395  irf7; interferon regulatory factor 7 [KO:K09447]
105945198  interferon beta [KO:K05414]
116408033  interferon omega-1-like [KO:K05414]
116407924  interferon alpha-3-like [KO:K05414]
100494283  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
100379789  fadd; FAS-associated death domain protein [KO:K02373]
779958  ripk1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
100495471  casp8; caspase-8 [KO:K04398] [EC:3.4.22.61]
548432  casp10; caspase-10 [KO:K04400] [EC:3.4.22.63]
549654  chuk; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
448125  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
448138  nfkbia; NF-kappa-B inhibitor alpha [KO:K04734]
100486083  nfkb1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
407869  rela; transcription factor p65 [KO:K04735]
100494415  traf2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
100101764  map3k7; mitogen-activated protein kinase kinase kinase 7 [KO:K04427] [EC:2.7.11.25]
493524  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
100490504  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
779515  mapk10; mitogen-activated protein kinase 10 isoform 2 [KO:K04440] [EC:2.7.11.24]
100170194  mapk8; mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
448296  mapk14; mitogen-activated protein kinase 14 [KO:K04441] [EC:2.7.11.24]
549834  mapk12; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
100101766  mapk11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
100144715  mapk13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
100145045  mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
100498389  interleukin-8 [KO:K10030]
100498551  cxcl8; interleukin-8 [KO:K10030]
100498017  cxcl2; interleukin-8 [KO:K10030]
100498234  interleukin-8 [KO:K10030]
101730379  interleukin-8 [KO:K10030]
100134991  tnf; tumor necrosis factor [KO:K03156]
101734580  interleukin-12 subunit alpha [KO:K05406]
100493914  interleukin-12 subunit beta [KO:K05425]
116409688  il12b; interleukin-12 subunit beta isoform X1 [KO:K05425]
100490108  cxcl9; C-X-C motif chemokine 11-1 [KO:K12671]
100490277  cxcl10; C-X-C motif chemokine 10 [KO:K12671]
100490785  cxcl11; C-X-C motif chemokine 11-1 [KO:K12671]
100493195  adar; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
116407931  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
100144739  cyld; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
100488183  ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
100489307  ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
100493643  rnf125; E3 ubiquitin-protein ligase RNF125 [KO:K12170] [EC:2.3.2.27]
549199  atg5; autophagy protein 5 [KO:K08339]
100493403  atg12; ubiquitin-like protein ATG12 [KO:K08336]
100489572  nlrx1; NLR family member X1 [KO:K12653]
100127621  sting1; stimulator of interferon genes protein [KO:K12654]
448134  otud5; OTU domain-containing protein 5 [KO:K12655] [EC:3.4.19.12]
496965  sike1; suppressor of IKBKE 1 [KO:K12656]
394804  ddx3x; ATP-dependent RNA helicase DDX3X [KO:K11594] [EC:5.6.2.7]
493472  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
779584  tkfc; triokinase/FMN cyclase isoform X1 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
xtr04010  MAPK signaling pathway
xtr04120  Ubiquitin mediated proteolysis
xtr04210  Apoptosis
KO pathway
ko04622   
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