KEGG   PATHWAY: pdp03040
Entry
pdp03040                    Pathway                                
Name
Spliceosome - Penicillium digitatum
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
pdp03040  Spliceosome
pdp03040

Other DBs
GO: 0005681
Organism
Penicillium digitatum [GN:pdp]
Gene
PDIP_00710  [KO:K12825]
PDIP_02020  [KO:K12662]
PDIP_02140  [KO:K12854] [EC:3.6.4.13]
PDIP_02770  [KO:K11099]
PDIP_04700  [KO:K12621]
PDIP_06150  [KO:K12821]
PDIP_06220  [KO:K12844]
PDIP_06230  [KO:K12869]
PDIP_06420  [KO:K12811] [EC:3.6.4.13]
PDIP_09290  [KO:K12819]
PDIP_11800  [KO:K12817]
PDIP_12410  [KO:K12847]
PDIP_13260  [KO:K12840]
PDIP_14370  [KO:K12813] [EC:3.6.4.13]
PDIP_15620  [KO:K12874]
PDIP_15630  [KO:K12878]
PDIP_16160  [KO:K11086]
PDIP_17340  [KO:K12846]
PDIP_18800  [KO:K12882]
PDIP_19020  [KO:K12831]
PDIP_21390  [KO:K12815] [EC:3.6.4.13]
PDIP_22280  [KO:K12873]
PDIP_22900  [KO:K11097]
PDIP_24840  [KO:K11984]
PDIP_25030  [KO:K11088]
PDIP_25630  [KO:K12868]
PDIP_26120  [KO:K03283]
PDIP_26290  [KO:K12829]
PDIP_27470  [KO:K12877]
PDIP_28420  [KO:K12627]
PDIP_28880  [KO:K12842]
PDIP_31170  [KO:K12862]
PDIP_32020  [KO:K12623]
PDIP_32220  [KO:K12833]
PDIP_32420  [KO:K12855]
PDIP_37520  [KO:K11087]
PDIP_38250  [KO:K12834]
PDIP_41190  [KO:K12871]
PDIP_42850  [KO:K12826]
PDIP_44120  [KO:K11095]
PDIP_45920  [KO:K12830]
PDIP_47010  [KO:K12839]
PDIP_48340  [KO:K13025] [EC:3.6.4.13]
PDIP_48350  [KO:K12827]
PDIP_50340  [KO:K12849]
PDIP_50770  [KO:K12879]
PDIP_51600  [KO:K12870]
PDIP_51970  [KO:K12881]
PDIP_54690  [KO:K12837]
PDIP_55960  [KO:K12864]
PDIP_56450  [KO:K12857]
PDIP_57130  [KO:K11092]
PDIP_57400  [KO:K12818] [EC:3.6.4.13]
PDIP_58510  [KO:K11096]
PDIP_59920  [KO:K12867]
PDIP_60170  [KO:K12820] [EC:3.6.4.13]
PDIP_61710  [KO:K12812] [EC:3.6.4.13]
PDIP_62180  [KO:K12733] [EC:5.2.1.8]
PDIP_63890  [KO:K12823] [EC:3.6.4.13]
PDIP_65220  [KO:K12845]
PDIP_66820  [KO:K12626]
PDIP_67050  [KO:K12848]
PDIP_67240  [KO:K12843]
PDIP_67550  [KO:K12836]
PDIP_68050  [KO:K12625]
PDIP_68270  [KO:K11094]
PDIP_69350  [KO:K12861]
PDIP_70790  [KO:K12816]
PDIP_72000  [KO:K12856]
PDIP_72120  [KO:K12876]
PDIP_72560  [KO:K12858] [EC:3.6.4.13]
PDIP_73540  [KO:K12859]
PDIP_73740  [KO:K12832]
PDIP_76980  [KO:K12872]
PDIP_78890  [KO:K12828]
PDIP_81430  [KO:K11098]
PDIP_81630  [KO:K12881]
PDIP_81820  [KO:K10599] [EC:2.3.2.27]
PDIP_81880  [KO:K11093]
PDIP_82240  [KO:K12622]
PDIP_84310  [KO:K12863]
PDIP_84640  [KO:K12883]
PDIP_85580  [KO:K03283]
PDIP_85610  [KO:K09567] [EC:5.2.1.8]
PDIP_85950  [KO:K12880]
PDIP_87140  [KO:K12860]
PDIP_88980  [KO:K12852]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
KO pathway
ko03040   

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