KEGG   PATHWAY: ocu04142
Entry
ocu04142                    Pathway                                
Name
Lysosome - Oryctolagus cuniculus (rabbit)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
Pathway map
ocu04142  Lysosome
ocu04142

Other DBs
GO: 0005764
Organism
Oryctolagus cuniculus (rabbit) [GN:ocu]
Gene
100008682  RAB7A; ras-related protein Rab-7a [KO:K07897]
100008746  NPC1; NPC intracellular cholesterol transporter 1 precursor [KO:K12385]
100008830  [KO:K01365] [EC:3.4.22.15]
100008950  [KO:K12373] [EC:3.2.1.52]
100008971  SLC36A1; proton-coupled amino acid transporter 1 [KO:K14209]
100008988  CD63; CD63 antigen [KO:K06497]
100009007  CLCN7; H(+)/Cl(-) exchange transporter 7 [KO:K05016]
100009024  TLR3; toll-like receptor 3 precursor [KO:K05401]
100009048  OSBP; oxysterol-binding protein 1 [KO:K20456]
100009063  CTSE; cathepsin E precursor [KO:K01382] [EC:3.4.23.34]
100009221  ATP6V1D; V-type proton ATPase subunit D [KO:K02149]
100009244  [KO:K12389]
100009331  LAPTM4A; lysosomal-associated transmembrane protein 4A [KO:K12387]
100009334  CTSK; cathepsin K precursor [KO:K01371] [EC:3.4.22.38]
100009375  [KO:K01197] [EC:3.2.1.35]
100009391  SPAM1; hyaluronidase PH-20 [KO:K01197] [EC:3.2.1.35]
100009420  SLC29A2; equilibrative nucleoside transporter 2 [KO:K15014]
100009508  [KO:K12373] [EC:3.2.1.52]
100009573  [KO:K06564]
100101593  [KO:K01363] [EC:3.4.22.1]
100101594  [KO:K01275] [EC:3.4.14.1]
100101596  [KO:K01373] [EC:3.4.22.41]
100101597  [KO:K01366] [EC:3.4.22.16]
100101598  [KO:K01368] [EC:3.4.22.27]
100101623  [KO:K08568] [EC:3.4.18.1]
100125982  [KO:K02154]
100125983  [KO:K02154]
100328660  SLC17A5; sialin [KO:K12301]
100328697  OSTM1; osteopetrosis-associated transmembrane protein 1 precursor [KO:K23863]
100328714  TFEB; transcription factor EB [KO:K15590]
100328760  ATP6AP1; V-type proton ATPase subunit S1 precursor [KO:K03662]
100337723  [KO:K01197] [EC:3.2.1.35]
100337977  [KO:K01197] [EC:3.2.1.35]
100338104  [KO:K08515]
100338173  [KO:K15014]
100338178  [KO:K04646]
100338209  [KO:K12348] [EC:3.5.1.23]
100338588  [KO:K01052] [EC:3.1.1.13]
100338800  [KO:K12382]
100338936  [KO:K23282]
100338965  [KO:K01444] [EC:3.5.1.26]
100338966  [KO:K08512]
100339120  MEAK7; MTOR-associated protein MEAK7 isoform X1 [KO:K27947]
100339251  [KO:K12309] [EC:3.2.1.23]
100339482  [KO:K01197] [EC:3.2.1.35]
100339519  [KO:K07955]
100339600  [KO:K13289] [EC:3.4.16.5]
100339732  [KO:K01197] [EC:3.2.1.35]
100339827  [KO:K01074] [EC:3.1.2.22]
100340151  [KO:K20463]
100340155  [KO:K20189]
100340211  [KO:K12311] [EC:3.2.1.24]
100340274  [KO:K12381] [EC:3.1.6.-]
100340415  [KO:K04994]
100340567  [KO:K08239] [EC:2.7.8.17]
100340674  [KO:K04993]
100340764  [KO:K12388]
100340986  [KO:K20174]
100340997  [KO:K28774]
100341055  [KO:K12399]
100341073  [KO:K19022]
100341202  [KO:K18466]
100341301  [KO:K16896]
100341367  [KO:K02147]
100341417  [KO:K20185]
100341442  [KO:K16186]
100341454  [KO:K12391]
100341463  [KO:K13443]
100341508  [KO:K02153]
100341736  [KO:K01158] [EC:3.1.22.1]
100342130  [KO:K01186] [EC:3.2.1.18]
100342532  [KO:K21398]
100342577  [KO:K08509]
100342589  [KO:K12397]
100342938  [KO:K20397]
100343436  [KO:K12404]
100343610  [KO:K12402]
100343632  [KO:K01158] [EC:3.1.22.1]
100343662  GBA1; lysosomal acid glucosylceramidase isoform X1 [KO:K01201] [EC:3.2.1.45]
100343688  [KO:K24628]
100343722  [KO:K20184]
100343794  [KO:K14209]
100343812  [KO:K24738]
100343886  [KO:K02148]
100344030  [KO:K01365] [EC:3.4.22.15]
100344063  [KO:K12390]
100344094  [KO:K06501]
100344181  [KO:K01205] [EC:3.2.1.50]
100344276  [KO:K20182]
100344431  [KO:K20183]
100344527  [KO:K02153]
100344610  [KO:K01189] [EC:3.2.1.22]
100344668  [KO:K20002]
100344730  [KO:K09455]
100344843  [KO:K24155]
100345210  [KO:K16185]
100345264  [KO:K12359]
100345399  [KO:K12305] [EC:3.6.1.6]
100345545  [KO:K02148]
100345742  [KO:K12399]
100345786  [KO:K16750]
100345856  [KO:K20398]
100346264  [KO:K24155]
100346402  [KO:K16185]
100346451  SLC11A1; natural resistance-associated macrophage protein 1 [KO:K12347]
100346470  [KO:K12401]
100346565  [KO:K01369] [EC:3.4.22.34]
100346570  [KO:K13444] [EC:1.8.3.7]
100346735  [KO:K12307]
100346772  [KO:K12311] [EC:3.2.1.24]
100346824  [KO:K09105]
100346891  [KO:K06546]
100346953  [KO:K12383]
100347007  [KO:K11825]
100347079  [KO:K20821]
100347137  [KO:K19024]
100347218  [KO:K14209]
100347278  [KO:K18466]
100347497  [KO:K25442]
100347541  [KO:K02154]
100347623  [KO:K01365] [EC:3.4.22.15]
100347673  [KO:K02145] [EC:7.1.2.2]
100347677  [KO:K12400]
100347710  [KO:K02155]
100347788  [KO:K01195] [EC:3.2.1.31]
100347794  [KO:K19525]
100347816  [KO:K10089]
100348325  [KO:K14995]
100348345  [KO:K26747]
100348723  [KO:K02147]
100348894  [KO:K19363]
100348919  [KO:K01192] [EC:3.2.1.25]
100348941  [KO:K12398]
100348947  [KO:K12311] [EC:3.2.1.24]
100349164  [KO:K12387]
100349207  [KO:K12393]
100349340  [KO:K01374] [EC:3.4.22.42]
100349480  [KO:K11826]
100349589  [KO:K02152]
100349923  [KO:K01206] [EC:3.2.1.51]
100350010  [KO:K16186]
100350036  [KO:K20463]
100350048  [KO:K01204] [EC:3.2.1.49]
100350054  [KO:K12397]
100350157  [KO:K02146]
100350237  [KO:K02146]
100350412  [KO:K22913] [EC:3.1.3.-]
100350456  [KO:K04644]
100350578  [KO:K11826]
100350701  [KO:K12311] [EC:3.2.1.24]
100350946  [KO:K06528]
100350986  [KO:K07897]
100351064  [KO:K04645]
100351118  [KO:K01134] [EC:3.1.6.8]
100351202  [KO:K18468]
100351350  [KO:K20185]
100351366  [KO:K04646]
100351605  [KO:K01202] [EC:3.2.1.46]
100351669  [KO:K03661]
100351767  [KO:K06562]
100351856  [KO:K12394]
100352097  [KO:K12386]
100352116  [KO:K08491]
100352212  [KO:K12393]
100352232  [KO:K20399]
100352345  [KO:K12384]
100352399  [KO:K20403]
100352404  [KO:K02151]
100352441  [KO:K12403]
100352644  [KO:K14410] [EC:3.1.3.2]
100352892  [KO:K01125] [EC:3.1.4.45]
100353235  [KO:K14209]
100353383  [KO:K02150]
100353386  [KO:K19025]
100353410  [KO:K02144]
100353465  [KO:K19027]
100353512  [KO:K20402]
100353898  [KO:K12350] [EC:3.1.4.12]
100353953  [KO:K20181]
100353993  [KO:K06528]
100354017  [KO:K20180]
100354167  [KO:K02150]
100354350  [KO:K28455]
100354351  [KO:K20463]
100354374  [KO:K20188]
100354566  [KO:K02152]
100354613  [KO:K20187]
100354666  [KO:K14638]
100354674  [KO:K01189] [EC:3.2.1.22]
100354723  [KO:K05648]
100354738  [KO:K14638]
100355117  [KO:K12391]
100355197  [KO:K12395]
100355267  [KO:K12360]
100355284  [KO:K06129] [EC:3.1.1.5]
100355285  [KO:K12404]
100355369  [KO:K20819]
100355407  [KO:K10532] [EC:2.3.1.78]
100355495  [KO:K04992]
100355887  [KO:K19525]
100356164  [KO:K07203] [EC:2.7.11.1]
100356256  [KO:K01365] [EC:3.4.22.15]
100356277  [KO:K12387]
100356602  [KO:K11137]
100356659  [KO:K01136] [EC:3.1.6.13]
100356707  [KO:K20174]
100356771  [KO:K20186]
100356773  [KO:K01279] [EC:3.4.14.9]
100356906  [KO:K12398]
100356922  [KO:K12392]
100357157  [KO:K19026]
100357188  [KO:K12394]
100357384  [KO:K00921] [EC:2.7.1.150]
100357404  [KO:K01206] [EC:3.2.1.51]
100357908  [KO:K15014]
100357920  [KO:K12383]
100358123  [KO:K18467]
100358167  [KO:K01074] [EC:3.1.2.22]
100358481  [KO:K20179]
100358625  [KO:K01158] [EC:3.1.22.1]
100358697  [KO:K16344]
100358901  [KO:K19023]
100359029  [KO:K01137] [EC:3.1.6.14]
100359276  [KO:K08266]
100359318  [KO:K02152]
100359322  [KO:K12382]
103345727  [KO:K11827]
103346484  [KO:K01135] [EC:3.1.6.12]
103346553  [KO:K07204]
103346838  [KO:K12311] [EC:3.2.1.24]
103346997  [KO:K20822]
103347267  [KO:K11824]
103347422  [KO:K08565] [EC:3.4.23.-]
103347590  [KO:K12316] [EC:3.2.1.20]
103348146  [KO:K02151]
103350744  [KO:K04370]
103350768  [KO:K08515]
103351007  [KO:K07955]
103351469  [KO:K20820]
103352096  [KO:K07955]
127482726  [KO:K20187]
127482734  [KO:K07204]
127482764  [KO:K24915]
127484435  [KO:K20820]
127486416  [KO:K10087]
127487415  [KO:K06497]
127487476  [KO:K20821]
127488902  [KO:K01074] [EC:3.1.2.22]
127488908  [KO:K01186] [EC:3.2.1.18]
127489565  [KO:K12404]
127489796  [KO:K20818]
127489858  [KO:K16184]
Compound
C00002  ATP
C00008  ADP
Reference
  Authors
Eskelinen EL, Tanaka Y, Saftig P
  Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
  Journal
Trends Cell Biol 13:137-45 (2003)
DOI:10.1016/S0962-8924(03)00005-9
Reference
PMID:1883197
  Authors
Neufeld EF
  Title
Lysosomal storage diseases.
  Journal
Annu Rev Biochem 60:257-80 (1991)
DOI:10.1146/annurev.bi.60.070191.001353
Reference
PMID:2943218
  Authors
von Figura K, Hasilik A
  Title
Lysosomal enzymes and their receptors.
  Journal
Annu Rev Biochem 55:167-93 (1986)
DOI:10.1146/annurev.bi.55.070186.001123
Reference
  Authors
Janvier K, Bonifacino JS
  Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
  Journal
Mol Biol Cell 16:4231-42 (2005)
DOI:10.1091/mbc.E05-03-0213
Reference
  Authors
Vergarajauregui S, Puertollano R
  Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
  Journal
Autophagy 4:832-4 (2008)
DOI:10.4161/auto.6567
Reference
  Authors
Jaskolka MC, Winkley SR, Kane PM
  Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
  Journal
Front Cell Dev Biol 9:698190 (2021)
DOI:10.3389/fcell.2021.698190
Reference
  Authors
Majdoul S, Compton AA
  Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
  Journal
Nat Rev Immunol 22:339-352 (2022)
DOI:10.1038/s41577-021-00626-8
Reference
  Authors
Saftig P, Klumperman J
  Title
Lysosome biogenesis and lysosomal membrane proteins: trafficking meets function.
  Journal
Nat Rev Mol Cell Biol 10:623-35 (2009)
DOI:10.1038/nrm2745
Reference
  Authors
Savini M, Zhao Q, Wang MC
  Title
Lysosomes: Signaling Hubs for Metabolic Sensing and Longevity.
  Journal
Trends Cell Biol 29:876-887 (2019)
DOI:10.1016/j.tcb.2019.08.008
Reference
  Authors
Meyer-Schwesinger C
  Title
Lysosome function in glomerular health and disease.
  Journal
Cell Tissue Res 385:371-392 (2021)
DOI:10.1007/s00441-020-03375-7
Reference
  Authors
Allemailem KS, Almatroudi A, Alrumaihi F, Almatroodi SA, Alkurbi MO, Basfar GT, Rahmani AH, Khan AA
  Title
Novel Approaches of Dysregulating Lysosome Functions in Cancer Cells by Specific Drugs and Its Nanoformulations: A Smart Approach of Modern Therapeutics.
  Journal
Int J Nanomedicine 16:5065-5098 (2021)
DOI:10.2147/IJN.S321343
Reference
  Authors
Zhang W, Yang X, Li Y, Yu L, Zhang B, Zhang J, Cho WJ, Venkatarangan V, Chen L, Burugula BB, Bui S, Wang Y, Duan C, Kitzman JO, Li M
  Title
GCAF(TMEM251) regulates lysosome biogenesis by activating the mannose-6-phosphate pathway.
  Journal
Nat Commun 13:5351 (2022)
DOI:10.1038/s41467-022-33025-1
Reference
  Authors
Liu Q, Wang W, Xu L, Zhang Q, Wang H
  Title
The host mannose-6-phosphate pathway and viral infection.
  Journal
Front Cell Infect Microbiol 14:1349221 (2024)
DOI:10.3389/fcimb.2024.1349221
Reference
  Authors
He Y, Fan Y, Ahmadpoor X, Wang Y, Li ZA, Zhu W, Lin H
  Title
Targeting lysosomal quality control as a therapeutic strategy against aging and diseases.
  Journal
Med Res Rev 44:2472-2509 (2024)
DOI:10.1002/med.22047
Reference
  Authors
Radulovic M, Yang C, Stenmark H
  Title
Lysosomal membrane homeostasis and its importance in physiology and disease.
  Journal
Nat Rev Mol Cell Biol 27:71-87 (2026)
DOI:10.1038/s41580-025-00873-w
Reference
  Authors
Watson ET, Wegeng WR, Aravani S, Ernst AM, von Blume J
  Title
Mechanistic insights into cargo sorting and export from the Golgi apparatus.
  Journal
Nat Rev Mol Cell Biol 26:940-956 (2025)
DOI:10.1038/s41580-025-00907-3
Related
pathway
ocu00511  Other glycan degradation
ocu00531  Glycosaminoglycan degradation
ocu04130  SNARE interactions in vesicular transport
ocu04140  Autophagy - animal
ocu04144  Endocytosis
ocu04145  Phagosome
ocu04150  mTOR signaling pathway
ocu04620  Toll-like receptor signaling pathway
KO pathway
ko04142   

DBGET integrated database retrieval system