KEGG   PATHWAY: ocu04142
Entry
ocu04142                    Pathway                                
Name
Lysosome - Oryctolagus cuniculus (rabbit)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
Pathway map
ocu04142  Lysosome
ocu04142

Other DBs
GO: 0005764
Organism
Oryctolagus cuniculus (rabbit) [GN:ocu]
Gene
100008746  NPC1; NPC intracellular cholesterol transporter 1 precursor [KO:K12385]
100008830  [KO:K01365] [EC:3.4.22.15]
100008950  [KO:K12373] [EC:3.2.1.52]
100008988  CD63; CD63 antigen [KO:K06497]
100009063  CTSE; cathepsin E precursor [KO:K01382] [EC:3.4.23.34]
100009244  [KO:K12389]
100009331  LAPTM4A; lysosomal-associated transmembrane protein 4A [KO:K12387]
100009334  CTSK; cathepsin K precursor [KO:K01371] [EC:3.4.22.38]
100009375  [KO:K01197] [EC:3.2.1.35]
100009391  SPAM1; hyaluronidase PH-20 [KO:K01197] [EC:3.2.1.35]
100009508  [KO:K12373] [EC:3.2.1.52]
100009573  [KO:K06564]
100101593  [KO:K01363] [EC:3.4.22.1]
100101594  [KO:K01275] [EC:3.4.14.1]
100101596  [KO:K01373] [EC:3.4.22.41]
100101597  [KO:K01366] [EC:3.4.22.16]
100101598  [KO:K01368] [EC:3.4.22.27]
100101623  [KO:K08568] [EC:3.4.18.1]
100125982  [KO:K02154]
100125983  [KO:K02154]
100328660  SLC17A5; sialin [KO:K12301]
100328760  ATP6AP1; V-type proton ATPase subunit S1 precursor [KO:K03662]
100337723  [KO:K01197] [EC:3.2.1.35]
100337977  [KO:K01197] [EC:3.2.1.35]
100338178  [KO:K04646]
100338209  [KO:K12348] [EC:3.5.1.23]
100338588  [KO:K01052] [EC:3.1.1.13]
100338800  [KO:K12382]
100338965  [KO:K01444] [EC:3.5.1.26]
100339120  MEAK7; MTOR-associated protein MEAK7 isoform X1 [KO:K27947]
100339251  [KO:K12309] [EC:3.2.1.23]
100339482  [KO:K01197] [EC:3.2.1.35]
100339600  [KO:K13289] [EC:3.4.16.5]
100339732  [KO:K01197] [EC:3.2.1.35]
100339827  [KO:K01074] [EC:3.1.2.22]
100340211  [KO:K12311] [EC:3.2.1.24]
100340274  [KO:K12381] [EC:3.1.6.-]
100340567  [KO:K08239] [EC:2.7.8.17]
100340764  [KO:K12388]
100341055  [KO:K12399]
100341454  [KO:K12391]
100341463  [KO:K13443]
100341736  [KO:K01158] [EC:3.1.22.1]
100342130  [KO:K01186] [EC:3.2.1.18]
100342532  [KO:K21398]
100342589  [KO:K12397]
100343436  [KO:K12404]
100343610  [KO:K12402]
100343632  [KO:K01158] [EC:3.1.22.1]
100343662  GBA1; lysosomal acid glucosylceramidase isoform X1 [KO:K01201] [EC:3.2.1.45]
100343812  [KO:K24738]
100344030  [KO:K01365] [EC:3.4.22.15]
100344063  [KO:K12390]
100344094  [KO:K06501]
100344181  [KO:K01205] [EC:3.2.1.50]
100344610  [KO:K01189] [EC:3.2.1.22]
100344843  [KO:K24155]
100345399  [KO:K12305] [EC:3.6.1.6]
100345742  [KO:K12399]
100346264  [KO:K24155]
100346451  SLC11A1; natural resistance-associated macrophage protein 1 [KO:K12347]
100346470  [KO:K12401]
100346565  [KO:K01369] [EC:3.4.22.34]
100346570  [KO:K13444] [EC:1.8.3.7]
100346735  [KO:K12307]
100346772  [KO:K12311] [EC:3.2.1.24]
100346891  [KO:K06546]
100346953  [KO:K12383]
100347497  [KO:K25442]
100347541  [KO:K02154]
100347623  [KO:K01365] [EC:3.4.22.15]
100347677  [KO:K12400]
100347710  [KO:K02155]
100347788  [KO:K01195] [EC:3.2.1.31]
100347816  [KO:K10089]
100348894  [KO:K19363]
100348919  [KO:K01192] [EC:3.2.1.25]
100348941  [KO:K12398]
100348947  [KO:K12311] [EC:3.2.1.24]
100349164  [KO:K12387]
100349207  [KO:K12393]
100349340  [KO:K01374] [EC:3.4.22.42]
100349923  [KO:K01206] [EC:3.2.1.51]
100350048  [KO:K01204] [EC:3.2.1.49]
100350054  [KO:K12397]
100350157  [KO:K02146]
100350237  [KO:K02146]
100350456  [KO:K04644]
100350701  [KO:K12311] [EC:3.2.1.24]
100350946  [KO:K06528]
100351064  [KO:K04645]
100351118  [KO:K01134] [EC:3.1.6.8]
100351366  [KO:K04646]
100351605  [KO:K01202] [EC:3.2.1.46]
100351669  [KO:K03661]
100351767  [KO:K06562]
100351856  [KO:K12394]
100352097  [KO:K12386]
100352212  [KO:K12393]
100352345  [KO:K12384]
100352441  [KO:K12403]
100352644  [KO:K14410] [EC:3.1.3.2]
100352892  [KO:K01125] [EC:3.1.4.45]
100353410  [KO:K02144]
100353898  [KO:K12350] [EC:3.1.4.12]
100353993  [KO:K06528]
100354674  [KO:K01189] [EC:3.2.1.22]
100355117  [KO:K12391]
100355197  [KO:K12395]
100355284  [KO:K06129] [EC:3.1.1.5]
100355285  [KO:K12404]
100355407  [KO:K10532] [EC:2.3.1.78]
100355495  [KO:K04992]
100356256  [KO:K01365] [EC:3.4.22.15]
100356277  [KO:K12387]
100356659  [KO:K01136] [EC:3.1.6.13]
100356773  [KO:K01279] [EC:3.4.14.9]
100356906  [KO:K12398]
100356922  [KO:K12392]
100357188  [KO:K12394]
100357404  [KO:K01206] [EC:3.2.1.51]
100357920  [KO:K12383]
100358167  [KO:K01074] [EC:3.1.2.22]
100358625  [KO:K01158] [EC:3.1.22.1]
100359029  [KO:K01137] [EC:3.1.6.14]
100359322  [KO:K12382]
103346484  [KO:K01135] [EC:3.1.6.12]
103346838  [KO:K12311] [EC:3.2.1.24]
103347422  [KO:K08565] [EC:3.4.23.-]
103347590  [KO:K12316] [EC:3.2.1.20]
127486416  [KO:K10087]
127487415  [KO:K06497]
127488902  [KO:K01074] [EC:3.1.2.22]
127488908  [KO:K01186] [EC:3.2.1.18]
127489565  [KO:K12404]
Compound
C00002  ATP
C00008  ADP
C00159  D-Mannose
C00275  D-Mannose 6-phosphate
Reference
  Authors
Eskelinen EL, Tanaka Y, Saftig P
  Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
  Journal
Trends Cell Biol 13:137-45 (2003)
DOI:10.1016/S0962-8924(03)00005-9
Reference
PMID:1883197
  Authors
Neufeld EF
  Title
Lysosomal storage diseases.
  Journal
Annu Rev Biochem 60:257-80 (1991)
DOI:10.1146/annurev.bi.60.070191.001353
Reference
PMID:2943218
  Authors
von Figura K, Hasilik A
  Title
Lysosomal enzymes and their receptors.
  Journal
Annu Rev Biochem 55:167-93 (1986)
DOI:10.1146/annurev.bi.55.070186.001123
Reference
  Authors
Janvier K, Bonifacino JS
  Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
  Journal
Mol Biol Cell 16:4231-42 (2005)
DOI:10.1091/mbc.E05-03-0213
Reference
  Authors
Vergarajauregui S, Puertollano R
  Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
  Journal
Autophagy 4:832-4 (2008)
DOI:10.4161/auto.6567
Reference
  Authors
Jaskolka MC, Winkley SR, Kane PM
  Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
  Journal
Front Cell Dev Biol 9:698190 (2021)
DOI:10.3389/fcell.2021.698190
Reference
  Authors
Majdoul S, Compton AA
  Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
  Journal
Nat Rev Immunol 10.1038/s41577-021-00626-8 (2021)
DOI:10.1038/s41577-021-00626-8
Related
pathway
ocu00511  Other glycan degradation
ocu00531  Glycosaminoglycan degradation
ocu04130  SNARE interactions in vesicular transport
ocu04140  Autophagy - animal
ocu04144  Endocytosis
KO pathway
ko04142   

DBGET integrated database retrieval system