KEGG   PATHWAY: aamp04120
Entry
aamp04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Arvicola amphibius (Eurasian water vole)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
aamp04120  Ubiquitin mediated proteolysis
aamp04120

Other DBs
GO: 0016567
Organism
Arvicola amphibius (Eurasian water vole) [GN:aamp]
Gene
119799903  [KO:K06688] [EC:2.3.2.23]
119800082  Rhobtb2; LOW QUALITY PROTEIN: rho-related BTB domain-containing protein 2 [KO:K07868]
119800615  Ube2d3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
119800843  Pias3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
119801070  Ube2q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
119801668  Siah1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
119801833  [KO:K02927]
119802038  Wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
119802065  Anapc10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
119802479  Herc2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
119802572  [KO:K04552] [EC:2.3.2.23]
119802601  Fzr1; fizzy-related protein homolog [KO:K03364]
119802611  Ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
119802872  Det1; DET1 homolog [KO:K10571]
119803073  Prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
119803392  Ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
119803501  Mdm2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
119804616  [KO:K04725] [EC:2.3.2.27]
119804660  Mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
119804691  Uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
119804738  Ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
119804774  Klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
119804793  Cul4b; cullin-4B [KO:K10609]
119804924  [KO:K10609]
119805129  [KO:K06689] [EC:2.3.2.23]
119805219  [KO:K10582] [EC:2.3.2.23]
119805439  [KO:K03875]
119805441  [KO:K03875]
119805442  [KO:K03875]
119805459  Huwe1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
119805473  [KO:K06689] [EC:2.3.2.23]
119806643  Ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
119806685  Cul1; cullin-1 [KO:K03347]
119806686  Uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
119806771  Herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
119807166  Ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
119807597  Ddb1; DNA damage-binding protein 1 isoform X1 [KO:K10610]
119807808  [KO:K04552] [EC:2.3.2.23]
119807847  [KO:K04552] [EC:2.3.2.23]
119807873  Vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
119807910  [KO:K02927]
119807985  [KO:K02977]
119808187  Anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
119808336  Birc6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
119808384  [KO:K04552] [EC:2.3.2.23]
119808393  [KO:K03873]
119808700  Nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
119808753  Pias1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
119808779  Herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
119809037  Cul5; cullin-5 isoform X1 [KO:K10612]
119809532  Anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
119809552  Fbxo4; F-box only protein 4 [KO:K10291]
119809564  [KO:K16060]
119809590  Skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
119809631  Cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
119809632  Birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
119809652  Ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
119809704  Rnf7; RING-box protein 2 isoform X1 [KO:K10611]
119809756  Pml; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
119809929  Map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
119810184  Ube2k; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
119810210  Keap1; kelch-like ECH-associated protein 1 [KO:K10456]
119810271  Ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
119810424  Ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
119810578  Fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
119810582  Uba7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
119810782  Ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
119811070  [KO:K04649] [EC:2.3.2.23]
119811223  Ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
119811382  Mgrn1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
119811702  Ube2b; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
119811803  Trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
119811832  Ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
119811880  Cdc16; LOW QUALITY PROTEIN: cell division cycle protein 16 homolog [KO:K03353]
119811930  Ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
119811932  Fbxw11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
119812055  Ubb; polyubiquitin-B [KO:K08770]
119812412  Stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
119812431  Socs3; suppressor of cytokine signaling 3 [KO:K04696]
119812739  Cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
119812740  Rchy1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
119812769  Skp1; S-phase kinase-associated protein 1 isoform X1 [KO:K03094]
119812787  Smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
119812942  Anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
119813226  Socs1; suppressor of cytokine signaling 1 [KO:K04694]
119813231  Brca1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
119813257  Uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
119813405  Ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
119813530  Elob; elongin-B [KO:K03873]
119813681  Cul4a; cullin-4A isoform X1 [KO:K10609]
119814007  Birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
119814058  Anapc1; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 1 [KO:K03348]
119814116  Ube2d4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
119814163  Pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
119814200  Itch; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
119814239  Nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
119814302  Ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
119814321  Ubox5; RING finger protein 37 [KO:K10600]
119814858  Traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
119815108  Cdc23; cell division cycle protein 23 homolog [KO:K03355]
119815339  Cdc34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
119815447  Ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
119815700  Ddb2; DNA damage-binding protein 2 [KO:K10140]
119816135  Ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
119816404  Nhlrc1; E3 ubiquitin-protein ligase NHLRC1 isoform X1 [KO:K10602] [EC:2.3.2.27]
119816468  Trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
119816604  [KO:K10580] [EC:2.3.2.23]
119816812  Syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
119817251  Ube2u; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
119817338  Cdc20; cell division cycle protein 20 homolog [KO:K03363]
119817449  Uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
119817525  Cul2; LOW QUALITY PROTEIN: cullin-2 [KO:K03870]
119817566  Ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
119817576  [KO:K03873]
119817750  Fbxo2; F-box only protein 2 [KO:K10099]
119817776  Klhl9; kelch-like protein 9 [KO:K10447]
119817846  Cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
119819090  Ube2l6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
119819466  [KO:K03872]
119819484  Anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
119819661  Ube2e3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
119820410  [KO:K02927]
119820473  Ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
119820486  Ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
119820564  [KO:K03094]
119820601  [KO:K02977]
119820641  Cul3; cullin-3 isoform X1 [KO:K03869]
119820685  [KO:K06689] [EC:2.3.2.23]
119820882  Ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
119820887  Trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
119820894  Prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
119820947  Sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
119821016  Uba2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
119822323  [KO:K02977]
119822363  Rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
119822433  Ube2g2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
119822580  Anapc4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
119822767  Anapc16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
119822780  Rhobtb1; LOW QUALITY PROTEIN: rho-related BTB domain-containing protein 1 [KO:K07868]
119823241  Aire; autoimmune regulator isoform X1 [KO:K10603]
119823435  Rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
119823443  Cul7; cullin-7 isoform X1 [KO:K10613]
119823557  Ube2d1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
119823843  [KO:K10580] [EC:2.3.2.23]
119823861  Herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
119824042  Ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
119824542  Pias4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
119824571  Cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
119824573  Ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
119824711  Anapc5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
119824777  Smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
119825118  Anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
119825335  Ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
119825384  Ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
119825448  Fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
119825557  Ubc; polyubiquitin-C [KO:K08770]
119826063  [KO:K10580] [EC:2.3.2.23]
119826118  Wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
119826223  Ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
119826232  Ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
119826235  [KO:K02927]
119826272  Fbxw7; F-box/WD repeat-containing protein 7 [KO:K10260]
119826443  Ube2w; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
119826523  Btrc; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
119826670  Eloc; elongin-C [KO:K03872]
119826856  [KO:K04552] [EC:2.3.2.23]
119827471  Cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
119827498  Ube2e1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
119827622  [KO:K20217] [EC:2.3.2.23]
119827772  [KO:K02927]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
aamp03050  Proteasome
KO pathway
ko04120   

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