Entry
Name
Endocytosis - Bubalus bubalis (water buffalo)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Bubalus bubalis (water buffalo) [GN:
bbub ]
Gene
102388942 ARPC4; actin-related protein 2/3 complex subunit 4 isoform X2 [KO:K05755 ]
102389716 VPS45; vacuolar protein sorting-associated protein 45 isoform X1 [KO:K12479 ]
102389924 VPS29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
102389981 VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196 ]
102390751 PSD4; PH and SEC7 domain-containing protein 4 isoform X1 [KO:K12494 ]
102391091 VPS37A; vacuolar protein sorting-associated protein 37A [KO:K12185 ]
102391258 IQSEC3; IQ motif and SEC7 domain-containing protein 3 isoform X2 [KO:K12495 ]
102391388 RAB11FIP3; rab11 family-interacting protein 3 isoform X6 [KO:K12485 ]
102392044 CHMP2B; charged multivesicular body protein 2b isoform X1 [KO:K12192 ]
102392562 VPS36; vacuolar protein-sorting-associated protein 36 isoform X1 [KO:K12190 ]
102392889 AGAP1; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X7 [KO:K12491 ]
102393667 RUFY2; RUN and FYVE domain-containing protein 2 isoform X5 [KO:K12482 ]
102395617 ASAP2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X4 [KO:K12488 ]
102395793 VPS4A; vacuolar protein sorting-associated protein 4A isoform X1 [KO:K12196 ]
102396395 CHMP4A; charged multivesicular body protein 4a isoform X1 [KO:K12194 ]
102396513 ACAP3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X2 [KO:K12489 ]
102396594 VPS35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
102396771 LDLRAP1; low density lipoprotein receptor adapter protein 1 isoform X2 [KO:K12474 ]
102396773 VPS37D; vacuolar protein sorting-associated protein 37D isoform X2 [KO:K12185 ]
102398271 EPS15; epidermal growth factor receptor substrate 15 isoform X4 [KO:K12472 ]
102399192 ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X2 [KO:K12489 ]
102399723 VPS26B; vacuolar protein sorting-associated protein 26B isoform X2 [KO:K18466 ]
102400710 SMAD3; mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605 ]
102401113 ASAP1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X2 [KO:K12488 ]
102401287 ASAP3; LOW QUALITY PROTEIN: arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 [KO:K12488 ]
102401323 SMAP2; stromal membrane-associated protein 2 isoform X1 [KO:K12486 ]
102401779 PARD6A; partitioning defective 6 homolog alpha isoform X1 [KO:K06093 ]
102403024 DNAJC6; putative tyrosine-protein phosphatase auxilin isoform X2 [KO:K09526 ]
102403472 CDC42; cell division control protein 42 homolog isoform X1 [KO:K04393 ]
102403762 IQSEC1; IQ motif and SEC7 domain-containing protein 1 isoform X3 [KO:K12495 ]
102403952 IGF2R; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
102403981 ARFGAP3; ADP-ribosylation factor GTPase-activating protein 3 [KO:K12493 ]
102404781 IQSEC2; IQ motif and SEC7 domain-containing protein 2 isoform X1 [KO:K12495 ]
102405003 IL2RA; interleukin-2 receptor subunit alpha isoform X1 [KO:K05068 ]
102405432 ZFYVE9; zinc finger FYVE domain-containing protein 9 isoform X3 [KO:K04679 ]
102405486 VPS25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
102405613 PSD3; PH and SEC7 domain-containing protein 3 isoform X1 [KO:K12494 ]
102406000 CAPZB; F-actin-capping protein subunit beta isoform X3 [KO:K10365 ]
102406187 RAB11FIP2; rab11 family-interacting protein 2 isoform X1 [KO:K12484 ]
102406564 SMAD2; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500 ]
102406765 SMAP1; stromal membrane-associated protein 1 isoform X4 [KO:K12486 ]
102406916 RABEP1; rab GTPase-binding effector protein 1 isoform X1 [KO:K12480 ]
102407052 PSD; PH and SEC7 domain-containing protein 1 isoform X3 [KO:K12494 ]
102407306 ARFGEF2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442 ]
102407661 VPS26A; LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 26A [KO:K18466 ]
102408700 BIN1; myc box-dependent-interacting protein 1 isoform X1 [KO:K12562 ]
102409098 GBF1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
102410129 RAB11FIP1; rab11 family-interacting protein 1 isoform X1 [KO:K12484 ]
102410493 EPS15L1; epidermal growth factor receptor substrate 15-like 1 isoform X3 [KO:K12472 ]
102410617 RAB11FIP4; rab11 family-interacting protein 4 isoform X1 [KO:K12485 ]
102411398 WASL; neural Wiskott-Aldrich syndrome protein isoform X2 [KO:K23612 ]
102411515 ARAP3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490 ]
102411653 VPS37B; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
102411823 STAM2; signal transducing adapter molecule 2 isoform X1 [KO:K04705 ]
102411851 VPS37C; vacuolar protein sorting-associated protein 37C [KO:K12185 ]
102412167 ACAP1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X2 [KO:K12489 ]
102412190 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
102412519 VTA1; vacuolar protein sorting-associated protein VTA1 homolog isoform X2 [KO:K12199 ]
102412697 RUFY1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
102413085 SH3KBP1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
102413127 ARAP2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K18440 ]
102413179 ZFYVE16; zinc finger FYVE domain-containing protein 16 isoform X2 [KO:K04679 ]
102413780 TSG101; tumor susceptibility gene 101 protein isoform X2 [KO:K12183 ]
102414185 PSD2; PH and SEC7 domain-containing protein 2 isoform X1 [KO:K12494 ]
102414220 AGAP2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 [KO:K17848 ]
102414264 VPS28; vacuolar protein sorting-associated protein 28 homolog isoform X2 [KO:K12184 ]
102414599 ARAP1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439 ]
102414693 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
102415295 RAB11FIP5; rab11 family-interacting protein 5 isoform X1 [KO:K12484 ]
102415407 ARPC5L; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
102415425 STAM; signal transducing adapter molecule 1 isoform X1 [KO:K04705 ]
102415445 AGAP3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X4 [KO:K12491 ]
102416144 ARFGAP2; ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493 ]
102416383 ARFGEF1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1 [KO:K18442 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
bbub04060 Cytokine-cytokine receptor interaction
bbub04070 Phosphatidylinositol signaling system
bbub04130 SNARE interactions in vesicular transport
KO pathway