KEGG   PATHWAY: lcf00310
Entry
lcf00310                    Pathway                                
Name
Lysine degradation - Lates calcarifer (barramundi perch)
Class
Metabolism; Amino acid metabolism
Pathway map
lcf00310  Lysine degradation
lcf00310

Module
lcf_M00032  Lysine degradation, lysine => saccharopine => acetoacetyl-CoA [PATH:lcf00310]
Other DBs
GO: 0006554
Organism
Lates calcarifer (barramundi perch) [GN:lcf]
Gene
108902912  LOW QUALITY PROTEIN: alpha-aminoadipic semialdehyde synthase, mitochondrial [KO:K14157] [EC:1.5.1.8 1.5.1.9]
108881294  alpha-aminoadipic semialdehyde dehydrogenase [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
108903085  kynurenine/alpha-aminoadipate aminotransferase, mitochondrial [KO:K00825] [EC:2.6.1.7 2.6.1.39]
108888513  LOW QUALITY PROTEIN: 2-oxoadipate dehydrogenase complex component E1 [KO:K15791] [EC:1.2.4.-]
108892499  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
108895607  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
108902871  dldh; LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
108875708  LOW QUALITY PROTEIN: glutaryl-CoA dehydrogenase a [KO:K00252] [EC:1.3.8.6]
108898695  glutaryl-CoA dehydrogenase b [KO:K00252] [EC:1.3.8.6]
108874899  hadhab; LOW QUALITY PROTEIN: hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha b [KO:K07515] [EC:4.2.1.17 1.1.1.211]
108901033  peroxisomal bifunctional enzyme isoform X1 [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
108888270  enoyl-CoA hydratase, mitochondrial [KO:K07511] [EC:4.2.1.17]
108888325  enoyl-CoA hydratase, mitochondrial [KO:K07511] [EC:4.2.1.17]
108888245  hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [KO:K00022] [EC:1.1.1.35]
108894025  acetyl-CoA acetyltransferase, mitochondrial [KO:K00626] [EC:2.3.1.9]
108883119  acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
108881232  hydroxylysine kinase [KO:K18201] [EC:2.7.1.81]
108881233  hykk.2; hydroxylysine kinase isoform X1 [KO:K18201] [EC:2.7.1.81]
108899216  5-phosphohydroxy-L-lysine phospho-lyase [KO:K18202] [EC:4.2.3.134]
108900077  peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
108896236  calmodulin-lysine N-methyltransferase [KO:K18826] [EC:2.1.1.60]
108897401  calmodulin-lysine N-methyltransferase [KO:K18826] [EC:2.1.1.60]
108886384  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2A [KO:K09186] [EC:2.1.1.354]
108876442  histone-lysine N-methyltransferase 2D isoform X1 [KO:K09187] [EC:2.1.1.354]
108890120  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2C [KO:K09188] [EC:2.1.1.354]
108883444  kmt2cb; histone-lysine N-methyltransferase 2C isoform X1 [KO:K09188] [EC:2.1.1.354]
108888836  histone-lysine N-methyltransferase 2B [KO:K14959] [EC:2.1.1.354]
108890658  kmt2bb; histone-lysine N-methyltransferase 2B isoform X1 [KO:K14959] [EC:2.1.1.354]
108886201  inactive histone-lysine N-methyltransferase 2E isoform X1 [KO:K09189] [EC:2.1.1.354]
108880620  setd1a; histone-lysine N-methyltransferase SETD1A [KO:K11422] [EC:2.1.1.354]
108879820  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETD1B-A [KO:K11422] [EC:2.1.1.354]
108875518  histone-lysine N-methyltransferase SETD7 [KO:K11431] [EC:2.1.1.364]
108876601  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase PRDM9-like [KO:K20796] [EC:2.1.1.354]
108888847  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ASH1L [KO:K06101] [EC:2.1.1.354]
108885923  histone-lysine N-methyltransferase ASH1L isoform X1 [KO:K06101] [EC:2.1.1.354]
108876917  histone-lysine N-methyltransferase SMYD3 isoform X1 [KO:K11426] [EC:2.1.1.354 2.1.1.357]
108882344  smyd1b; histone-lysine N-methyltransferase SMYD1b isoform X1 [KO:K11426] [EC:2.1.1.354 2.1.1.357]
108876957  smyd2a; N-lysine methyltransferase SMYD2-A [KO:K11426] [EC:2.1.1.354 2.1.1.357]
108900754  smyd1a; histone-lysine N-methyltransferase SMYD1a [KO:K11426] [EC:2.1.1.354 2.1.1.357]
108895646  LOW QUALITY PROTEIN: N-lysine methyltransferase SMYD2-B [KO:K11426] [EC:2.1.1.354 2.1.1.357]
108900517  histone-lysine N-methyltransferase SUV39H1 isoform X1 [KO:K11419] [EC:2.1.1.355]
108878664  ehmt1a; histone-lysine N-methyltransferase EHMT1a [KO:K11420] [EC:2.1.1.355]
108889015  ehmt1b; histone-lysine N-methyltransferase EHMT1 isoform X1 [KO:K11420] [EC:2.1.1.355]
108901185  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase EHMT2 [KO:K11420] [EC:2.1.1.355]
108885905  histone-lysine N-methyltransferase SETDB1-B [KO:K11421] [EC:2.1.1.366]
108877185  histone-lysine N-methyltransferase SETDB2 [KO:K18494] [EC:2.1.1.355]
108899885  prdm2b; PR domain zinc finger protein 2 isoform X1 [KO:K11432] [EC:2.1.1.355]
108891714  LOW QUALITY PROTEIN: PR domain zinc finger protein 2 [KO:K11432] [EC:2.1.1.355]
108900993  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase EZH1 [KO:K17451] [EC:2.1.1.356]
108884998  histone-lysine N-methyltransferase EZH2 [KO:K11430] [EC:2.1.1.356]
108898863  setmar; histone-lysine N-methyltransferase SETMAR [KO:K11433] [EC:2.1.1.357]
108882946  nsd1a; histone-lysine N-methyltransferase, H3 lysine-36 specific isoform X4 [KO:K15588] [EC:2.1.1.357]
108893500  nsd1b; uncharacterized protein nsd1b [KO:K15588] [EC:2.1.1.357]
108889160  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase NSD2 [KO:K11424] [EC:2.1.1.357]
108881778  nsd3; histone-lysine N-methyltransferase NSD3 isoform X1 [KO:K11425] [EC:2.1.1.370 2.1.1.371]
108891907  histone-lysine N-methyltransferase SETD2 isoform X1 [KO:K11423] [EC:2.1.1.359]
108877359  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase, H3 lysine-79 specific [KO:K11427] [EC:2.1.1.360]
108897302  kmt5aa; N-lysine methyltransferase KMT5A-A [KO:K11428] [EC:2.1.1.361]
108878140  kmt5ab; lysine methyltransferase 5Ab [KO:K11428] [EC:2.1.1.361]
108874937  putative histone-lysine N-methyltransferase PRDM6 isoform X1 [KO:K20795] [EC:2.1.1.361]
108894245  histone-lysine N-methyltransferase KMT5B [KO:K11429] [EC:2.1.1.362]
108886333  histone-lysine N-methyltransferase MECOM isoform X1 [KO:K04462] [EC:2.1.1.367]
108891704  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase PRDM16 [KO:K22410] [EC:2.1.1.367]
108893980  trimethyllysine dioxygenase, mitochondrial [KO:K00474] [EC:1.14.11.8]
108886103  aldehyde dehydrogenase, mitochondrial [KO:K00128] [EC:1.2.1.3]
108900322  aldehyde dehydrogenase, dimeric NADP-preferring [KO:K00128] [EC:1.2.1.3]
108900334  aldehyde dehydrogenase family 3 member A2 [KO:K00128] [EC:1.2.1.3]
108893865  aldh3a2b; aldehyde dehydrogenase family 3 member A2b [KO:K00128] [EC:1.2.1.3]
108898601  aldehyde dehydrogenase family 16 member A1 [KO:K00128] [EC:1.2.1.3]
108883809  aldh9a1b; 4-trimethylaminobutyraldehyde dehydrogenase B isoform X1 [KO:K00149] [EC:1.2.1.47 1.2.1.3]
108878969  aldh9a1a.1; 4-trimethylaminobutyraldehyde dehydrogenase A [KO:K00149] [EC:1.2.1.47 1.2.1.3]
108887814  gamma-butyrobetaine dioxygenase [KO:K00471] [EC:1.14.11.1]
108900451  plod1a; procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 isoform X1 [KO:K00473] [EC:1.14.11.4]
108881681  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1 [KO:K13645] [EC:1.14.11.4]
108892807  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 [KO:K13646] [EC:1.14.11.4 2.4.1.50 2.4.1.66]
108892696  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 [KO:K13646] [EC:1.14.11.4 2.4.1.50 2.4.1.66]
108879294  cercam; procollagen galactosyltransferase 2 [KO:K11703] [EC:2.4.1.50]
108883226  procollagen galactosyltransferase 2 [KO:K11703] [EC:2.4.1.50]
108885418  colgalt1b; procollagen galactosyltransferase 1 [KO:K11703] [EC:2.4.1.50]
108902652  colgalt1a; procollagen galactosyltransferase 1 [KO:K11703] [EC:2.4.1.50]
108877375  colgalt2b; procollagen galactosyltransferase 2 [KO:K11703] [EC:2.4.1.50]
Compound
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00037  Glycine
C00042  Succinate
C00047  L-Lysine
C00068  Thiamin diphosphate
C00136  Butanoyl-CoA
C00164  Acetoacetate
C00322  2-Oxoadipate
C00332  Acetoacetyl-CoA
C00408  L-Pipecolate
C00431  5-Aminopentanoate
C00449  N6-(L-1,3-Dicarboxypropyl)-L-lysine
C00450  (S)-2,3,4,5-Tetrahydropyridine-2-carboxylate
C00487  Carnitine
C00489  Glutarate
C00527  Glutaryl-CoA
C00739  D-Lysine
C00877  Crotonoyl-CoA
C00956  L-2-Aminoadipate
C00990  5-Aminopentanamide
C01087  (R)-2-Hydroxyglutarate
C01142  (3S)-3,6-Diaminohexanoate
C01144  (S)-3-Hydroxybutanoyl-CoA
C01149  4-Trimethylammoniobutanal
C01181  4-Trimethylammoniobutanoate
C01186  (3S,5S)-3,5-Diaminohexanoate
C01211  Procollagen 5-hydroxy-L-lysine
C01259  (3S)-3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
C01672  Cadaverine
C02188  Protein lysine
C02727  N6-Acetyl-L-lysine
C03087  5-Acetamidopentanoate
C03196  (S)-2-Hydroxyglutarate
C03239  6-Amino-2-oxohexanoate
C03273  5-Oxopentanoate
C03366  5-Phosphooxy-L-lysine
C03656  (S)-5-Amino-3-oxohexanoic acid
C03793  N6,N6,N6-Trimethyl-L-lysine
C04020  D-Lysopine
C04076  L-2-Aminoadipate 6-semialdehyde
C04092  Delta1-Piperideine-2-carboxylate
C04487  5-(D-Galactosyloxy)-L-lysine-procollagen
C05161  (2R,5S)-2,5-Diaminohexanoate
C05231  L-3-Aminobutyryl-CoA
C05544  Protein N6-methyl-L-lysine
C05545  Protein N6,N6-dimethyl-L-lysine
C05546  Protein N6,N6,N6-trimethyl-L-lysine
C05548  6-Acetamido-2-oxohexanoate
C05825  2-Amino-5-oxohexanoate
C06157  [Dihydrolipoyllysine-residue succinyltransferase] S-glutaryldihydrolipoyllysine
C12455  5-Aminopentanal
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16741  L-Hydroxylysine
C22667  4-Carboxy-1-hydroxybutyryl-ThPP
Reference
PMID:11802770
  Authors
Vaz FM, Wanders RJ.
  Title
Carnitine biosynthesis in mammals.
  Journal
Biochem J 361:417-29 (2002)
DOI:10.1042/bj3610417
Reference
PMID:1682209
  Authors
Large PJ, Robertson A.
  Title
The route of lysine breakdown in Candida tropicalis.
  Journal
FEMS Microbiol Lett 66:209-13 (1991)
DOI:10.1111/j.1574-6968.1990.tb03998.x
Related
pathway
lcf00020  Citrate cycle (TCA cycle)
lcf00780  Biotin metabolism
KO pathway
ko00310   
LinkDB

DBGET integrated database retrieval system