KEGG   PATHWAY: rbb04218
Entry
rbb04218                    Pathway                                
Name
Cellular senescence - Rhinopithecus bieti (black snub-nosed monkey)
Description
Cellular senescence is a state of irreversible cellular arrest and can be triggered by a number of factors, such as telomere shortening, oncogene activation, irradiation, DNA damage and oxidative stress. It is characterized by enlarged flattened morphology, senescence-associated beta-galactosidase (SA-b-gal) activity, secretion of inflammatory cytokines, growth factors and matrix metalloproteinases, as part of the senescence-associated secretory phenotype (SASP). Cellular senescence is functionally associated with many biological processes including aging, tumor suppression, placental biology, embryonic development, and wound healing.
Class
Cellular Processes; Cell growth and death
Pathway map
rbb04218  Cellular senescence
rbb04218

Other DBs
GO: 0090398
Organism
Rhinopithecus bieti (black snub-nosed monkey) [GN:rbb]
Gene
108512004  [KO:K05863]
108512058  TRAF3IP2; adapter protein CIKS isoform X1 [KO:K21124]
108512087  MAP2K2; dual specificity mitogen-activated protein kinase kinase 2 [KO:K04369] [EC:2.7.12.2]
108512265  PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit isoform X1 [KO:K06269] [EC:3.1.3.16]
108512329  LIN37; protein lin-37 homolog isoform X1 [KO:K21774]
108512375  RAD9B; cell cycle checkpoint control protein RAD9B isoform X1 [KO:K10995]
108512466  TGFBR1; TGF-beta receptor type-1 isoform X1 [KO:K04674] [EC:2.7.11.30]
108512498  AKT3; RAC-gamma serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
108512653  CALM2; calmodulin [KO:K02183]
108513580  TSC1; hamartin isoform X1 [KO:K07206]
108513587  EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1 [KO:K07205]
108513614  FBXW11; LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 11 [KO:K03362]
108513830  HIPK3; homeodomain-interacting protein kinase 3 isoform X1 [KO:K08826] [EC:2.7.11.1]
108513913  E2F5; transcription factor E2F5 isoform X1 [KO:K04682]
108514115  FOXO1; forkhead box protein O1 [KO:K07201]
108514363  TP53; cellular tumor antigen p53 isoform X1 [KO:K04451]
108514672  MAP2K1; dual specificity mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
108514692  CALML4; LOW QUALITY PROTEIN: calmodulin-like protein 4 [KO:K02183]
108514714  SMAD3; mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605]
108514897  SIRT1; LOW QUALITY PROTEIN: NAD-dependent protein deacetylase sirtuin-1 [KO:K11411] [EC:2.3.1.286]
108515136  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
108515198  CACNA1D; voltage-dependent L-type calcium channel subunit alpha-1D isoform X1 [KO:K04851]
108515354  NFATC3; nuclear factor of activated T-cells, cytoplasmic 3 [KO:K17333]
108515423  E2F4; transcription factor E2F4 [KO:K04682]
108515587  CCNA2; cyclin-A2 [KO:K06627]
108515615  [KO:K05863]
108516053  CDK2; cyclin-dependent kinase 2 isoform X1 [KO:K02206] [EC:2.7.11.22]
108516255  ITPR3; inositol 1,4,5-trisphosphate receptor type 3 [KO:K04960]
108516558  TGFBR2; TGF-beta receptor type-2 [KO:K04388] [EC:2.7.11.30]
108516606  CCNA1; cyclin-A1 isoform X1 [KO:K06627]
108516875  PPP3CB; serine/threonine-protein phosphatase 2B catalytic subunit beta isoform isoform X1 [KO:K04348] [EC:3.1.3.16]
108516879  MCU; calcium uniporter protein, mitochondrial [KO:K20858]
108516989  LIN54; protein lin-54 homolog isoform X1 [KO:K21776]
108517380  ATM; LOW QUALITY PROTEIN: serine-protein kinase ATM [KO:K04728] [EC:2.7.11.1]
108517523  CDK1; cyclin-dependent kinase 1 [KO:K02087] [EC:2.7.11.22 2.7.11.23]
108517558  CHEK2; serine/threonine-protein kinase Chk2 isoform X1 [KO:K06641] [EC:2.7.11.1]
108517663  CDC25A; LOW QUALITY PROTEIN: M-phase inducer phosphatase 1 [KO:K06645] [EC:3.1.3.48]
108517986  RAF1; RAF proto-oncogene serine/threonine-protein kinase isoform X1 [KO:K04366] [EC:2.7.11.1]
108518604  PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit [KO:K06269] [EC:3.1.3.16]
108518616  RAD9A; cell cycle checkpoint control protein RAD9A isoform X1 [KO:K10994] [EC:3.1.11.2]
108518758  [KO:K05863]
108518939  SERPINE1; plasminogen activator inhibitor 1 [KO:K03982]
108519399  TSC2; tuberin isoform X1 [KO:K07207]
108519603  SMAD2; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500]
108519858  RBL1; retinoblastoma-like protein 1 isoform X1 [KO:K04681]
108520356  [KO:K05864] [EC:5.2.1.8]
108520362  [KO:K05864] [EC:5.2.1.8]
108520942  SLC25A6; ADP/ATP translocase 3 isoform X1 [KO:K05863]
108521513  MAP2K3; dual specificity mitogen-activated protein kinase kinase 3 isoform X1 [KO:K04432] [EC:2.7.12.2]
108521880  AKT1; LOW QUALITY PROTEIN: RAC-alpha serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
108522131  E2F3; transcription factor E2F3 isoform X1 [KO:K06620]
108522294  FOXM1; forkhead box protein M1 [KO:K09406]
108522491  ZFP36L2; zinc finger protein 36, C3H1 type-like 2 [KO:K18753]
108522562  [KO:K06751]
108523126  RHEB; GTP-binding protein Rheb [KO:K07208]
108523215  MAP2K6; dual specificity mitogen-activated protein kinase kinase 6 isoform X1 [KO:K04433] [EC:2.7.12.2]
108523366  SQSTM1; sequestosome-1 [KO:K14381]
108523449  CXCL8; interleukin-8 [KO:K10030]
108523695  MAPK3; mitogen-activated protein kinase 3 isoform X1 [KO:K04371] [EC:2.7.11.24]
108523739  ITPR2; LOW QUALITY PROTEIN: inositol 1,4,5-trisphosphate receptor type 2 [KO:K04959]
108523748  KRAS; GTPase KRas isoform X1 [KO:K07827]
108524397  CDK4; cyclin-dependent kinase 4 [KO:K02089] [EC:2.7.11.22]
108525049  NFATC1; nuclear factor of activated T-cells, cytoplasmic 1 isoform X1 [KO:K04446]
108525123  [KO:K21769]
108525667  [KO:K06751]
108526906  NBN; nibrin [KO:K10867]
108527352  HUS1; checkpoint protein HUS1 isoform X1 [KO:K10903]
108527540  PTEN; phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN isoform X1 [KO:K01110] [EC:3.1.3.16 3.1.3.48 3.1.3.67]
108528109  HIPK1; homeodomain-interacting protein kinase 1 isoform X1 [KO:K08826] [EC:2.7.11.1]
108528122  NRAS; GTPase NRas [KO:K07828]
108528248  CAPN2; calpain-2 catalytic subunit [KO:K03853] [EC:3.4.22.53]
108528282  TGFB2; transforming growth factor beta-2 isoform X1 [KO:K13376]
108528326  MAPK14; mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
108528327  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
108528336  CDKN1A; LOW QUALITY PROTEIN: cyclin-dependent kinase inhibitor 1 [KO:K06625]
108528429  [KO:K06751]
108528432  [KO:K06751]
108528436  [KO:K06751]
108528490  CDK6; cyclin-dependent kinase 6 [KO:K02091] [EC:2.7.11.22]
108528737  ITPR1; inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958]
108528761  MYC; myc proto-oncogene protein [KO:K04377]
108529091  ETS1; protein C-ets-1 isoform X1 [KO:K02678]
108529326  IL6; interleukin-6 isoform X1 [KO:K05405]
108529513  VDAC2; voltage-dependent anion-selective channel protein 2 [KO:K15040]
108529563  VDAC1; voltage-dependent anion-selective channel protein 1 isoform X1 [KO:K05862]
108529586  RAD50; LOW QUALITY PROTEIN: DNA repair protein RAD50 [KO:K10866] [EC:3.6.-.-]
108529787  [KO:K05863]
108529886  CALML3; calmodulin-like protein 3 [KO:K02183]
108529898  CALML5; calmodulin-like protein 5 [KO:K02183]
108530611  CCNE1; G1/S-specific cyclin-E1 isoform X1 [KO:K06626]
108530701  RB1; retinoblastoma-associated protein [KO:K06618]
108531068  CALM3; calmodulin isoform X1 [KO:K02183]
108531271  RBL2; LOW QUALITY PROTEIN: retinoblastoma-like protein 2 [KO:K16332]
108531451  GADD45B; growth arrest and DNA damage-inducible protein GADD45 beta [KO:K04402]
108532254  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
108532746  PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit [KO:K06269] [EC:3.1.3.16]
108532817  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
108532870  GADD45A; growth arrest and DNA damage-inducible protein GADD45 alpha [KO:K04402]
108532960  PIK3CA; LOW QUALITY PROTEIN: phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922] [EC:2.7.1.153]
108533038  E2F1; LOW QUALITY PROTEIN: transcription factor E2F1 [KO:K17454]
108533409  MYBL2; myb-related protein B [KO:K21769]
108533501  CCND3; LOW QUALITY PROTEIN: G1/S-specific cyclin-D3 [KO:K10152]
108533814  FOXO3; forkhead box protein O3 [KO:K09408]
108533995  [KO:K02183]
108534276  PIK3R2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649]
108534372  TRPV4; transient receptor potential cation channel subfamily V member 4 [KO:K04973]
108534795  IGFBP3; insulin-like growth factor-binding protein 3 isoform X1 [KO:K10138]
108534818  HIPK2; homeodomain-interacting protein kinase 2 isoform X1 [KO:K08826] [EC:2.7.11.1]
108534906  LIN52; protein lin-52 homolog [KO:K21775]
108534939  TGFB3; transforming growth factor beta-3 [KO:K13377]
108535144  MAPKAPK2; MAP kinase-activated protein kinase 2 isoform X1 [KO:K04443] [EC:2.7.11.1]
108535148  RASSF5; ras association domain-containing protein 5 isoform X1 [KO:K08015]
108535524  RRAS2; ras-related protein R-Ras2 isoform X1 [KO:K07830]
108535636  PIK3R3; phosphatidylinositol 3-kinase regulatory subunit gamma isoform X1 [KO:K02649]
108535749  MRE11A; LOW QUALITY PROTEIN: double-strand break repair protein MRE11A [KO:K10865]
108535827  RRAS; ras-related protein R-Ras isoform X1 [KO:K07829]
108535876  ATR; LOW QUALITY PROTEIN: serine/threonine-protein kinase ATR [KO:K06640] [EC:2.7.11.1]
108535888  [KO:K05863]
108535906  CALM1; calmodulin [KO:K02183]
108535929  [KO:K21773]
108535938  [KO:K06643] [EC:2.3.2.27]
108536001  CALML6; calmodulin-like protein 6 isoform X1 [KO:K02183]
108536070  MAPK1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
108536158  TGFB1; transforming growth factor beta-1 isoform X1 [KO:K13375]
108536489  CCND2; G1/S-specific cyclin-D2 [KO:K10151]
108536704  GATA4; LOW QUALITY PROTEIN: transcription factor GATA-4 [KO:K09183]
108537054  CDKN2A; cyclin-dependent kinase inhibitor 2A [KO:K06621]
108537064  CDKN2B; LOW QUALITY PROTEIN: cyclin-dependent kinase 4 inhibitor B [KO:K04685]
108537161  PPP3R2; calcineurin subunit B type 2 [KO:K06268]
108537243  RBBP4; histone-binding protein RBBP4 isoform X1 [KO:K10752]
108538096  CCNB3; G2/mitotic-specific cyclin-B3 [KO:K21771]
108538448  E2F2; transcription factor E2F2 isoform X1 [KO:K09389]
108538574  SLC25A31; ADP/ATP translocase 4 [KO:K05863]
108538612  GADD45G; growth arrest and DNA damage-inducible protein GADD45 gamma [KO:K04402]
108538712  ZFP36L1; zinc finger protein 36, C3H1 type-like 1 [KO:K18753]
108538726  [KO:K21773]
108538745  CCND1; G1/S-specific cyclin-D1 [KO:K04503]
108539062  HIPK4; homeodomain-interacting protein kinase 4 [KO:K08826] [EC:2.7.11.1]
108539069  AKT2; RAC-beta serine/threonine-protein kinase isoform X1 [KO:K04456] [EC:2.7.11.1]
108539355  PIK3CD; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform isoform X1 [KO:K00922] [EC:2.7.1.153]
108539366  MTOR; serine/threonine-protein kinase mTOR isoform X1 [KO:K07203] [EC:2.7.11.1]
108539403  MAPK12; mitogen-activated protein kinase 12 isoform X1 [KO:K04441] [EC:2.7.11.24]
108539422  MAPK11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
108539466  NFATC2; nuclear factor of activated T-cells, cytoplasmic 2 isoform X1 [KO:K17332]
108539896  CCNE2; LOW QUALITY PROTEIN: G1/S-specific cyclin-E2 [KO:K06626]
108540717  VDAC3; voltage-dependent anion-selective channel protein 3 isoform X1 [KO:K15041]
108540785  PPP3CC; serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform isoform X1 [KO:K04348] [EC:3.1.3.16]
108540953  NFATC4; LOW QUALITY PROTEIN: nuclear factor of activated T-cells, cytoplasmic 4 [KO:K17334]
108541164  CCNB1; G2/mitotic-specific cyclin-B1 [KO:K05868]
108541175  PIK3R1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649]
108541808  IL1A; interleukin-1 alpha [KO:K04383]
108542336  CHEK1; serine/threonine-protein kinase Chk1 isoform X1 [KO:K02216] [EC:2.7.11.1]
108542795  [KO:K04348] [EC:3.1.3.16]
108543093  [KO:K06751]
108543097  [KO:K06751]
108543285  CAPN1; calpain-1 catalytic subunit [KO:K01367] [EC:3.4.22.52]
108543519  RELA; transcription factor p65 [KO:K04735]
108543525  HRAS; GTPase HRas isoform X1 [KO:K02833]
108543791  RAD1; cell cycle checkpoint protein RAD1 [KO:K02830] [EC:3.1.11.2]
108544591  PIK3CB; LOW QUALITY PROTEIN: phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform [KO:K00922] [EC:2.7.1.153]
108544611  MRAS; ras-related protein M-Ras isoform X1 [KO:K07831]
108544822  CCNB2; G2/mitotic-specific cyclin-B2 [KO:K21770]
108544826  TRPM7; transient receptor potential cation channel subfamily M member 7 [KO:K04982] [EC:2.7.11.1]
Compound
C00027  Hydrogen peroxide
C00076  Calcium cation
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C07909  Sirolimus
C16844  Hydroxyl radical
Reference
  Authors
Munoz-Espin D, Serrano M
  Title
Cellular senescence: from physiology to pathology.
  Journal
Nat Rev Mol Cell Biol 15:482-96 (2014)
DOI:10.1038/nrm3823
Reference
  Authors
Childs BG, Durik M, Baker DJ, van Deursen JM
  Title
Cellular senescence in aging and age-related disease: from mechanisms to therapy.
  Journal
Nat Med 21:1424-35 (2015)
DOI:10.1038/nm.4000
Reference
  Authors
Sharpless NE, Sherr CJ
  Title
Forging a signature of in vivo senescence.
  Journal
Nat Rev Cancer 15:397-408 (2015)
DOI:10.1038/nrc3960
Reference
  Authors
Fridlyanskaya I, Alekseenko L, Nikolsky N
  Title
Senescence as a general cellular response to stress: A mini-review.
  Journal
Exp Gerontol 72:124-8 (2015)
DOI:10.1016/j.exger.2015.09.021
Reference
  Authors
Lujambio A
  Title
To clear, or not to clear (senescent cells)? That is the question.
  Journal
Bioessays 38 Suppl 1:S56-64 (2016)
DOI:10.1002/bies.201670910
Reference
  Authors
Di Mitri D, Alimonti A
  Title
Non-Cell-Autonomous Regulation of Cellular Senescence in Cancer.
  Journal
Trends Cell Biol 26:215-26 (2016)
DOI:10.1016/j.tcb.2015.10.005
Reference
  Authors
Francica P, Aebersold DM, Medova M
  Title
Senescence as biologic endpoint following pharmacological targeting of receptor tyrosine kinases in cancer.
  Journal
Biochem Pharmacol 126:1-12 (2017)
DOI:10.1016/j.bcp.2016.08.022
Reference
  Authors
Bartling B
  Title
Cellular senescence in normal and premature lung aging.
  Journal
Z Gerontol Geriatr 46:613-22 (2013)
DOI:10.1007/s00391-013-0543-3
Reference
  Authors
Munoz-Espin D, Canamero M, Maraver A, Gomez-Lopez G, Contreras J, Murillo-Cuesta S, Rodriguez-Baeza A, Varela-Nieto I, Ruberte J, Collado M, Serrano M
  Title
Programmed cell senescence during mammalian embryonic development.
  Journal
Cell 155:1104-18 (2013)
DOI:10.1016/j.cell.2013.10.019
Reference
  Authors
Herranz N, Gallage S, Gil J
  Title
TORn about SASP regulation.
  Journal
Cell Cycle 14:3771-2 (2015)
DOI:10.1080/15384101.2015.1105694
Reference
  Authors
Martin N, Bernard D
  Title
Calcium signaling and cellular senescence.
  Journal
Cell Calcium S0143-4160(17)30049-0 (2017)
DOI:10.1016/j.ceca.2017.04.001
Reference
  Authors
Farfariello V, Iamshanova O, Germain E, Fliniaux I, Prevarskaya N
  Title
Calcium homeostasis in cancer: A focus on senescence.
  Journal
Biochim Biophys Acta 1853:1974-9 (2015)
DOI:10.1016/j.bbamcr.2015.03.005
Reference
  Authors
McCarthy DA, Clark RR, Bartling TR, Trebak M, Melendez JA
  Title
Redox control of the senescence regulator interleukin-1alpha and the secretory phenotype.
  Journal
J Biol Chem 288:32149-59 (2013)
DOI:10.1074/jbc.M113.493841
Reference
  Authors
Donninger H, Schmidt ML, Mezzanotte J, Barnoud T, Clark GJ
  Title
Ras signaling through RASSF proteins.
  Journal
Semin Cell Dev Biol 58:86-95 (2016)
DOI:10.1016/j.semcdb.2016.06.007
Reference
  Authors
Barnoud T, Schmidt ML, Donninger H, Clark GJ
  Title
The role of the NORE1A tumor suppressor in Oncogene-Induced Senescence.
  Journal
Cancer Lett 400:30-36 (2017)
DOI:10.1016/j.canlet.2017.04.030
Reference
  Authors
Kang C, Xu Q, Martin TD, Li MZ, Demaria M, Aron L, Lu T, Yankner BA, Campisi J, Elledge SJ
  Title
The DNA damage response induces inflammation and senescence by inhibiting autophagy of GATA4.
  Journal
Science 349:aaa5612 (2015)
DOI:10.1126/science.aaa5612
Reference
  Authors
Cao X, Li M
  Title
A New Pathway for Senescence Regulation.
  Journal
Genomics Proteomics Bioinformatics 13:333-5 (2015)
DOI:10.1016/j.gpb.2015.11.002
Reference
  Authors
Gire V, Dulic V
  Title
Senescence from G2 arrest, revisited.
  Journal
Cell Cycle 14:297-304 (2015)
DOI:10.1080/15384101.2014.1000134
Reference
  Authors
Mowla SN, Lam EW, Jat PS
  Title
Cellular senescence and aging: the role of B-MYB.
  Journal
Aging Cell 13:773-9 (2014)
DOI:10.1111/acel.12242
Reference
  Authors
Yao H, Chung S, Hwang JW, Rajendrasozhan S, Sundar IK, Dean DA, McBurney MW, Guarente L, Gu W, Ronty M, Kinnula VL, Rahman I
  Title
SIRT1 protects against emphysema via FOXO3-mediated reduction of premature senescence in mice.
  Journal
J Clin Invest 122:2032-45 (2012)
DOI:10.1172/JCI60132
Reference
  Authors
Hwang JW, Yao H, Caito S, Sundar IK, Rahman I
  Title
Redox regulation of SIRT1 in inflammation and cellular senescence.
  Journal
Free Radic Biol Med 61:95-110 (2013)
DOI:10.1016/j.freeradbiomed.2013.03.015
Related
pathway
rbb04020  Calcium signaling pathway
rbb04068  FoxO signaling pathway
rbb04110  Cell cycle
rbb04115  p53 signaling pathway
rbb04150  mTOR signaling pathway
KO pathway
ko04218   

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